RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 NOL7Q9UMY1 257 aaKnown RBP15.55■□□□□ 0.08
TCOF1-214ENST00000515035 KIF14Q15058 1648 aa15.55■□□□□ 0.08
TCOF1-214ENST00000515035 PEG3Q9GZU2 1588 aa15.55■□□□□ 0.08
TCOF1-214ENST00000515035 KRT32Q14532 448 aa15.55■□□□□ 0.08
TCOF1-214ENST00000515035 CCDC158Q5M9N0 1113 aa15.55■□□□□ 0.08
TCOF1-214ENST00000515035 ZHX3Q9H4I2 956 aa15.55■□□□□ 0.08
TCOF1-214ENST00000515035 PRDM11Q9NQV5 511 aa15.55■□□□□ 0.08
TCOF1-214ENST00000515035 CDKL5O76039 1030 aa15.55■□□□□ 0.08
TCOF1-214ENST00000515035 DDX11Q96FC9 970 aa15.55■□□□□ 0.08
TCOF1-214ENST00000515035 SCAND2PQ9GZW5 306 aaPredicted RBP15.55■□□□□ 0.08
TCOF1-214ENST00000515035 TRMT1Q9NXH9 659 aaKnown RBP15.55■□□□□ 0.08
TCOF1-214ENST00000515035 SLC3A2P08195 630 aaKnown RBP15.54■□□□□ 0.08
TCOF1-214ENST00000515035 CASTP20810 708 aaKnown RBP15.54■□□□□ 0.08
TCOF1-214ENST00000515035 CASQ1P31415 396 aa15.54■□□□□ 0.08
TCOF1-214ENST00000515035 RPAP2Q8IXW5 612 aaPredicted RBP15.54■□□□□ 0.08
TCOF1-214ENST00000515035 SIL1Q9H173 461 aa15.54■□□□□ 0.08
TCOF1-214ENST00000515035 IL1RAPL2Q9NP60 686 aa15.54■□□□□ 0.08
TCOF1-214ENST00000515035 NUTM2BA6NNL0 878 aaPredicted RBP15.54■□□□□ 0.08
TCOF1-214ENST00000515035 NUTM2EB1AL46 878 aaPredicted RBP15.54■□□□□ 0.08
TCOF1-214ENST00000515035 CLCN1P35523 988 aa15.54■□□□□ 0.08
TCOF1-214ENST00000515035 NUTM2AQ8IVF1 878 aaPredicted RBP15.54■□□□□ 0.08
TCOF1-214ENST00000515035 CCDC83Q8IWF9 413 aa15.54■□□□□ 0.08
TCOF1-214ENST00000515035 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.54■□□□□ 0.082e-6■■■□□ 18.1
TCOF1-214ENST00000515035 CCDC69A6NI79 296 aa15.53■□□□□ 0.08
TCOF1-214ENST00000515035 TTC39AQ5SRH9 613 aa15.53■□□□□ 0.08
TCOF1-214ENST00000515035 KLHL34Q8N239 644 aa15.53■□□□□ 0.08
TCOF1-214ENST00000515035 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.53■□□□□ 0.08
TCOF1-214ENST00000515035 SLFN5Q08AF3 891 aa15.53■□□□□ 0.08
TCOF1-214ENST00000515035 SF3B2Q13435 895 aaKnown RBP15.53■□□□□ 0.08
TCOF1-214ENST00000515035 PRIMPOLQ96LW4 560 aa15.53■□□□□ 0.08
TCOF1-214ENST00000515035 IMMTQ16891 758 aaKnown RBP15.53■□□□□ 0.08
TCOF1-214ENST00000515035 SPG7Q9UQ90 795 aa15.53■□□□□ 0.08
TCOF1-214ENST00000515035 MCM3P25205 808 aa15.53■□□□□ 0.08
TCOF1-214ENST00000515035 MAP2K1Q02750 393 aaPredicted RBP15.53■□□□□ 0.08
TCOF1-214ENST00000515035 NEMFO60524 1076 aa15.52■□□□□ 0.08
TCOF1-214ENST00000515035 TOP1P11387 765 aaKnown RBP15.52■□□□□ 0.08
TCOF1-214ENST00000515035 TMEM57Q8N5G2 664 aa15.52■□□□□ 0.08
TCOF1-214ENST00000515035 NUP133Q8WUM0 1156 aa15.52■□□□□ 0.08
TCOF1-214ENST00000515035 SMARCC1Q92922 1105 aaPredicted RBP15.52■□□□□ 0.08
TCOF1-214ENST00000515035 TIGD1Q96MW7 591 aa15.52■□□□□ 0.08
TCOF1-214ENST00000515035 RBM42Q9BTD8 480 aaKnown RBP15.52■□□□□ 0.08
TCOF1-214ENST00000515035 TICAM2Q86XR7 235 aa15.52■□□□□ 0.08
TCOF1-214ENST00000515035 DENND4BO75064 1496 aaPredicted RBP15.52■□□□□ 0.08
TCOF1-214ENST00000515035 SRGAP3O43295 1099 aa15.52■□□□□ 0.07
TCOF1-214ENST00000515035 RNF187Q5TA31 235 aaPredicted RBP15.52■□□□□ 0.07
TCOF1-214ENST00000515035 KIF6Q6ZMV9 814 aa15.52■□□□□ 0.07
TCOF1-214ENST00000515035 AACSQ86V21 672 aa15.52■□□□□ 0.07
TCOF1-214ENST00000515035 ZNF608Q9ULD9 1512 aaPredicted RBP15.52■□□□□ 0.07
TCOF1-214ENST00000515035 GOLGA6L10A0A0M3HER8 536 aa15.51■□□□□ 0.07
TCOF1-214ENST00000515035 BMS1Q14692 1282 aaKnown RBP15.51■□□□□ 0.07
TCOF1-214ENST00000515035 NACAP1Q9BZK3 213 aa15.51■□□□□ 0.07
TCOF1-214ENST00000515035 CAMSAP2Q08AD1 1489 aa15.51■□□□□ 0.07
TCOF1-214ENST00000515035 ADCY5O95622 1261 aa15.51■□□□□ 0.07
TCOF1-214ENST00000515035 MICALCLQ6ZW33 695 aa15.51■□□□□ 0.07
TCOF1-214ENST00000515035 SEPT11Q9NVA2 429 aaKnown RBP15.51■□□□□ 0.07
TCOF1-214ENST00000515035 CCDC61Q9Y6R9 512 aa15.51■□□□□ 0.07
TCOF1-214ENST00000515035 LMAN1P49257 510 aa15.51■□□□□ 0.07
TCOF1-214ENST00000515035 C20orf194Q5TEA3 1177 aa15.51■□□□□ 0.07
TCOF1-214ENST00000515035 CKAP2LQ8IYA6 745 aa15.51■□□□□ 0.07
TCOF1-214ENST00000515035 DCAF8L1A6NGE4 600 aa15.5■□□□□ 0.07
TCOF1-214ENST00000515035 GBP2P32456 591 aaPredicted RBP15.5■□□□□ 0.07
TCOF1-214ENST00000515035 SPA17Q15506 151 aa15.5■□□□□ 0.07
TCOF1-214ENST00000515035 ZNF428Q96B54 188 aa15.5■□□□□ 0.07
TCOF1-214ENST00000515035 CCDC113Q9H0I3 377 aa15.5■□□□□ 0.07
TCOF1-214ENST00000515035 SULT6B1Q6IMI4 303 aa15.5■□□□□ 0.07
TCOF1-214ENST00000515035 ZNF530Q6P9A1 599 aaPredicted RBP15.5■□□□□ 0.07
TCOF1-214ENST00000515035 ZNF397Q8NF99 534 aaPredicted RBP15.49■□□□□ 0.07
TCOF1-214ENST00000515035 CTNNA3Q9UI47 895 aa15.49■□□□□ 0.07
TCOF1-214ENST00000515035 HMGB2P26583 209 aaKnown RBP15.49■□□□□ 0.07
TCOF1-214ENST00000515035 CABP4P57796 275 aa15.49■□□□□ 0.07
TCOF1-214ENST00000515035 PIP4K2BP78356 416 aa15.49■□□□□ 0.07
TCOF1-214ENST00000515035 BMP2KQ9NSY1 1161 aaPredicted RBP15.49■□□□□ 0.07
TCOF1-214ENST00000515035 PCF11O94913 1555 aaKnown RBP15.49■□□□□ 0.07
TCOF1-214ENST00000515035 SSBP05455 408 aaKnown RBP eCLIP15.48■□□□□ 0.07
TCOF1-214ENST00000515035 GSDMDP57764 484 aa15.48■□□□□ 0.07
TCOF1-214ENST00000515035 RAI14Q9P0K7 980 aa15.48■□□□□ 0.07
TCOF1-214ENST00000515035 EXOC6BQ9Y2D4 811 aa15.48■□□□□ 0.07
TCOF1-214ENST00000515035 CCDC57Q2TAC2 916 aa15.48■□□□□ 0.07
TCOF1-214ENST00000515035 KLHL40Q2TBA0 621 aa15.48■□□□□ 0.07
TCOF1-214ENST00000515035 NUDT16Q96DE0 195 aaKnown RBP15.48■□□□□ 0.07
TCOF1-214ENST00000515035 NAIPQ13075 1403 aa15.48■□□□□ 0.07
TCOF1-214ENST00000515035 KRT222Q8N1A0 295 aa15.48■□□□□ 0.07
TCOF1-214ENST00000515035 KCNH5Q8NCM2 988 aa15.48■□□□□ 0.07
TCOF1-214ENST00000515035 CNNM1Q9NRU3 951 aa15.48■□□□□ 0.07
TCOF1-214ENST00000515035 BAG4O95429 457 aaKnown RBP15.47■□□□□ 0.07
TCOF1-214ENST00000515035 LUZP1Q86V48 1076 aa15.47■□□□□ 0.07
TCOF1-214ENST00000515035 CTAGE5O15320 804 aa15.47■□□□□ 0.07
TCOF1-214ENST00000515035 KLHL10Q6JEL2 608 aa15.47■□□□□ 0.07
TCOF1-214ENST00000515035 GDPD2Q9HCC8 539 aa15.47■□□□□ 0.07
TCOF1-214ENST00000515035 POTEB2H3BUK9 544 aa15.47■□□□□ 0.07
TCOF1-214ENST00000515035 MNAT1P51948 309 aa15.47■□□□□ 0.07
TCOF1-214ENST00000515035 RBM25P49756 843 aaKnown RBP15.47■□□□□ 0.07
TCOF1-214ENST00000515035 SNW1Q13573 536 aaKnown RBP15.47■□□□□ 0.07
TCOF1-214ENST00000515035 TMEM132AQ24JP5 1023 aa15.47■□□□□ 0.07
TCOF1-214ENST00000515035 SOGA3Q5TF21 947 aa15.47■□□□□ 0.07
TCOF1-214ENST00000515035 SH2B1Q9NRF2 756 aaPredicted RBP15.47■□□□□ 0.07
TCOF1-214ENST00000515035 DDX19AQ9NUU7 478 aaKnown RBP15.47■□□□□ 0.07
TCOF1-214ENST00000515035 PLEKHH1Q9ULM0 1364 aa15.47■□□□□ 0.07
TCOF1-214ENST00000515035 DDX54Q8TDD1 881 aaKnown RBP15.46■□□□□ 0.07
TCOF1-214ENST00000515035 PAFAH1B1P43034 410 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 227.4 ms