RNA–Protein interactions for RNA: ENST00000514929.1

SNF8-213, Transcript of SNF8, ESCRT-II complex subunit, human

TSL 5

Gene SNF8, Length 775 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNF8-213	ENST00000514929	ATP6V1A	P38606	617 aa		32.97	■■■□□ 2.87
SNF8-213	ENST00000514929	FLAD1	Q8NFF5	587 aa		32.96	■■■□□ 2.87
SNF8-213	ENST00000514929	FHDC1	Q9C0D6	1143 aa	Predicted RBP	32.96	■■■□□ 2.87
SNF8-213	ENST00000514929	DCAF8L1	A6NGE4	600 aa		32.94	■■■□□ 2.86
SNF8-213	ENST00000514929	LINC00116	Q8NCU8	138 aa		32.94	■■■□□ 2.86
SNF8-213	ENST00000514929	RBM42	Q9BTD8	480 aa	Known RBP	32.94	■■■□□ 2.86
SNF8-213	ENST00000514929	PPP2R1A	P30153	589 aa		32.93	■■■□□ 2.86
SNF8-213	ENST00000514929	ITPK1	Q13572	414 aa		32.93	■■■□□ 2.86
SNF8-213	ENST00000514929	NFATC2IP	Q8NCF5	419 aa		32.93	■■■□□ 2.86
SNF8-213	ENST00000514929	SCN11A	Q9UI33	1791 aa		32.91	■■■□□ 2.86
SNF8-213	ENST00000514929	MTHFSD	Q2M296	383 aa	Known RBP	32.91	■■■□□ 2.86
SNF8-213	ENST00000514929	SYT17	Q9BSW7	474 aa		32.91	■■■□□ 2.86
SNF8-213	ENST00000514929	COL24A1	Q17RW2	1714 aa		32.91	■■■□□ 2.86
SNF8-213	ENST00000514929	PHF14	O94880	888 aa		32.89	■■■□□ 2.86
SNF8-213	ENST00000514929	UBR3	Q6ZT12	1888 aa		32.87	■■■□□ 2.85
SNF8-213	ENST00000514929	MSL1	Q68DK7	614 aa		32.87	■■■□□ 2.85
SNF8-213	ENST00000514929	LGR6	Q9HBX8	967 aa		32.87	■■■□□ 2.85
SNF8-213	ENST00000514929	NUDC	Q9Y266	331 aa		32.87	■■■□□ 2.85
SNF8-213	ENST00000514929	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	32.86	■■■□□ 2.85
SNF8-213	ENST00000514929	GNPAT	O15228	680 aa		32.86	■■■□□ 2.85
SNF8-213	ENST00000514929	AMIGO3	Q86WK7	504 aa		32.86	■■■□□ 2.85
SNF8-213	ENST00000514929	KLHL34	Q8N239	644 aa		32.86	■■■□□ 2.85
SNF8-213	ENST00000514929	SLC4A9	Q96Q91	983 aa		32.86	■■■□□ 2.85
SNF8-213	ENST00000514929	ZNF831	Q5JPB2	1677 aa		32.85	■■■□□ 2.85
SNF8-213	ENST00000514929	RNMT	O43148	476 aa	Known RBP	32.85	■■■□□ 2.85
SNF8-213	ENST00000514929	PTCD1	O75127	700 aa	Known RBP	32.85	■■■□□ 2.85
SNF8-213	ENST00000514929	SSFA2	P28290	1259 aa		32.85	■■■□□ 2.85
SNF8-213	ENST00000514929	SMIM5	Q71RC9	77 aa		32.85	■■■□□ 2.85
SNF8-213	ENST00000514929	SLC52A2	Q9HAB3	445 aa		32.85	■■■□□ 2.85
SNF8-213	ENST00000514929	MAP3K5	Q99683	1374 aa		32.83	■■■□□ 2.85
SNF8-213	ENST00000514929	GAS2L2	Q8NHY3	880 aa		32.81	■■■□□ 2.84
SNF8-213	ENST00000514929	VIRMA	Q69YN4	1812 aa	Known RBP	32.8	■■■□□ 2.84
SNF8-213	ENST00000514929	MRC1	P22897	1456 aa		32.8	■■■□□ 2.84
SNF8-213	ENST00000514929	U2AF1L5	P0DN76	240 aa	Predicted RBP	32.79	■■■□□ 2.84
SNF8-213	ENST00000514929	U2AF1	Q01081	240 aa	Known RBP eCLIP	32.79	■■■□□ 2.84
SNF8-213	ENST00000514929	COL5A3	P25940	1745 aa	Predicted RBP	32.78	■■■□□ 2.84
SNF8-213	ENST00000514929	PRKAR2B	P31323	418 aa		32.78	■■■□□ 2.84
SNF8-213	ENST00000514929	RSPH6A	Q9H0K4	717 aa		32.78	■■■□□ 2.84
SNF8-213	ENST00000514929	RTCB	Q9Y3I0	505 aa	Known RBP	32.78	■■■□□ 2.84
SNF8-213	ENST00000514929	RC3H1	Q5TC82	1133 aa	Known RBP	32.77	■■■□□ 2.84
SNF8-213	ENST00000514929	ADAMTS7	Q9UKP4	1686 aa		32.77	■■■□□ 2.84
SNF8-213	ENST00000514929	CNTNAP4	Q9C0A0	1308 aa		32.76	■■■□□ 2.83
SNF8-213	ENST00000514929	GNAT3	A8MTJ3	354 aa		32.75	■■■□□ 2.83
SNF8-213	ENST00000514929	SLC39A6	Q13433	755 aa		32.73	■■■□□ 2.83
SNF8-213	ENST00000514929	TRAPPC3L	Q5T215	181 aa		32.73	■■■□□ 2.83
SNF8-213	ENST00000514929	PHACTR3	Q96KR7	559 aa		32.73	■■■□□ 2.83
SNF8-213	ENST00000514929	RPS6KA4	O75676	772 aa		32.71	■■■□□ 2.83
SNF8-213	ENST00000514929	DDX10	Q13206	875 aa	Known RBP	32.71	■■■□□ 2.83
SNF8-213	ENST00000514929	TJP1	Q07157	1748 aa		32.71	■■■□□ 2.83
SNF8-213	ENST00000514929	FCHSD2	O94868	740 aa		32.7	■■■□□ 2.83
SNF8-213	ENST00000514929	TEF	Q10587	303 aa		32.7	■■■□□ 2.83
SNF8-213	ENST00000514929	ADRA2B	P18089	450 aa		32.69	■■■□□ 2.82
SNF8-213	ENST00000514929	CRKL	P46109	303 aa	Known RBP	32.69	■■■□□ 2.82
SNF8-213	ENST00000514929	IL17RE	Q8NFR9	667 aa		32.69	■■■□□ 2.82
SNF8-213	ENST00000514929	CIC	Q96RK0	1608 aa	Predicted RBP	32.69	■■■□□ 2.82
SNF8-213	ENST00000514929	NLGN2	Q8NFZ4	835 aa		32.68	■■■□□ 2.82
SNF8-213	ENST00000514929	ARHGEF1	Q92888	912 aa	Known RBP	32.67	■■■□□ 2.82
SNF8-213	ENST00000514929	RFC4	P35249	363 aa		32.66	■■■□□ 2.82
SNF8-213	ENST00000514929	DNAJC10	Q8IXB1	793 aa		32.66	■■■□□ 2.82
SNF8-213	ENST00000514929	MYH14	Q7Z406	1995 aa	Known RBP	32.66	■■■□□ 2.82
SNF8-213	ENST00000514929	KCP	Q6ZWJ8	1503 aa		32.66	■■■□□ 2.82
SNF8-213	ENST00000514929	YY1	P25490	414 aa		32.65	■■■□□ 2.82
SNF8-213	ENST00000514929	TTC5	Q8N0Z6	440 aa		32.65	■■■□□ 2.82
SNF8-213	ENST00000514929	GPR162	Q16538	588 aa		32.64	■■■□□ 2.82
SNF8-213	ENST00000514929	RALBP1	Q15311	655 aa		32.63	■■■□□ 2.81
SNF8-213	ENST00000514929	CD2AP	Q9Y5K6	639 aa		32.63	■■■□□ 2.81
SNF8-213	ENST00000514929	PELP1	Q8IZL8	1130 aa	Known RBP	32.62	■■■□□ 2.81
SNF8-213	ENST00000514929	NLGN1	Q8N2Q7	840 aa		32.61	■■■□□ 2.81
SNF8-213	ENST00000514929	CCDC87	Q9NVE4	849 aa		32.61	■■■□□ 2.81
SNF8-213	ENST00000514929	CEMIP	Q8WUJ3	1361 aa		32.6	■■■□□ 2.81
SNF8-213	ENST00000514929	NEFM	P07197	916 aa		32.6	■■■□□ 2.81
SNF8-213	ENST00000514929	INTS5	Q6P9B9	1019 aa	Known RBP	32.6	■■■□□ 2.81
SNF8-213	ENST00000514929	VSIG10	Q8N0Z9	540 aa		32.6	■■■□□ 2.81
SNF8-213	ENST00000514929	RTF1	Q92541	710 aa	Known RBP	32.6	■■■□□ 2.81
SNF8-213	ENST00000514929	MMP10	P09238	476 aa		32.59	■■■□□ 2.81
SNF8-213	ENST00000514929	SIPA1L3	O60292	1781 aa	Predicted RBP	32.59	■■■□□ 2.81
SNF8-213	ENST00000514929	UBR2	Q8IWV8	1755 aa		32.59	■■■□□ 2.81
SNF8-213	ENST00000514929	C4A	P0C0L4	1744 aa		32.58	■■■□□ 2.81
SNF8-213	ENST00000514929	CYP19A1	P11511	503 aa	Predicted RBP	32.58	■■■□□ 2.81
SNF8-213	ENST00000514929	ZNF790	Q6PG37	636 aa		32.58	■■■□□ 2.81
SNF8-213	ENST00000514929	GYS1	P13807	737 aa		32.57	■■■□□ 2.8
SNF8-213	ENST00000514929	BTBD11	A6QL63	1104 aa		32.54	■■■□□ 2.8
SNF8-213	ENST00000514929	ZEB1	P37275	1124 aa	Predicted RBP	32.54	■■■□□ 2.8
SNF8-213	ENST00000514929	MCM10	Q7L590	875 aa		32.54	■■■□□ 2.8
SNF8-213	ENST00000514929	ZNF496	Q96IT1	587 aa	Predicted RBP	32.54	■■■□□ 2.8
SNF8-213	ENST00000514929	SRP68	Q9UHB9	627 aa	Known RBP	32.53	■■■□□ 2.8
SNF8-213	ENST00000514929	USP42	Q9H9J4	1324 aa	Known RBP	32.52	■■■□□ 2.8
SNF8-213	ENST00000514929	HTATSF1	O43719	755 aa	Known RBP	32.52	■■■□□ 2.8
SNF8-213	ENST00000514929	HEG1	Q9ULI3	1381 aa		32.52	■■■□□ 2.8
SNF8-213	ENST00000514929	SOS1	Q07889	1333 aa	Predicted RBP	32.51	■■■□□ 2.8
SNF8-213	ENST00000514929	STARD3NL	O95772	234 aa		32.51	■■■□□ 2.79
SNF8-213	ENST00000514929	FMNL2	Q96PY5	1086 aa		32.51	■■■□□ 2.79
SNF8-213	ENST00000514929	PNN	Q9H307	717 aa	Known RBP	32.51	■■■□□ 2.79
SNF8-213	ENST00000514929	ZBTB1	Q9Y2K1	713 aa		32.51	■■■□□ 2.79
SNF8-213	ENST00000514929	UTRN	P46939	3433 aa		32.51	■■■□□ 2.79
SNF8-213	ENST00000514929	DCTN1	Q14203	1278 aa		32.5	■■■□□ 2.79
SNF8-213	ENST00000514929	MYBBP1A	Q9BQG0	1328 aa	Known RBP	32.5	■■■□□ 2.79
SNF8-213	ENST00000514929	TEX13A	Q9BXU3	409 aa	Predicted RBP	32.49	■■■□□ 2.79
SNF8-213	ENST00000514929	PARP3	Q9Y6F1	533 aa		32.49	■■■□□ 2.79
SNF8-213	ENST00000514929	ZPR1	O75312	459 aa		32.48	■■■□□ 2.79

Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms