RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 NSD2O96028 1365 aa14.98□□□□□ -0.01
USP53-209ENST00000514665 PI4KAP2A4QPH2 592 aa14.98□□□□□ -0.01
USP53-209ENST00000514665 IDH1O75874 414 aaKnown RBP14.98□□□□□ -0.01
USP53-209ENST00000514665 TSPYL6Q8N831 410 aa14.98□□□□□ -0.01
USP53-209ENST00000514665 PI4KAP1Q8N8J0 262 aa14.98□□□□□ -0.01
USP53-209ENST00000514665 CCDC112Q8NEF3 446 aa14.98□□□□□ -0.01
USP53-209ENST00000514665 ASXL1Q8IXJ9 1541 aa14.98□□□□□ -0.01
USP53-209ENST00000514665 PPP1R42Q7Z4L9 355 aa14.98□□□□□ -0.01
USP53-209ENST00000514665 MYD88Q99836 296 aa14.98□□□□□ -0.01
USP53-209ENST00000514665 PANK2Q9BZ23 570 aa14.98□□□□□ -0.01
USP53-209ENST00000514665 USP25Q9UHP3 1055 aa14.98□□□□□ -0.01
USP53-209ENST00000514665 MPHOSPH8Q99549 860 aa14.97□□□□□ -0.01
USP53-209ENST00000514665 TFIP11Q9UBB9 837 aaKnown RBP14.97□□□□□ -0.01
USP53-209ENST00000514665 LARP1Q6PKG0 1096 aaKnown RBP14.97□□□□□ -0.01
USP53-209ENST00000514665 LIMCH1Q9UPQ0 1083 aa14.97□□□□□ -0.01
USP53-209ENST00000514665 PTPRCP08575 1304 aa14.97□□□□□ -0.01
USP53-209ENST00000514665 GUCY1B3Q02153 619 aa14.97□□□□□ -0.01
USP53-209ENST00000514665 KRT24Q2M2I5 525 aa14.97□□□□□ -0.01
USP53-209ENST00000514665 TRIM22Q8IYM9 498 aa14.97□□□□□ -0.01
USP53-209ENST00000514665 KCNH5Q8NCM2 988 aa14.97□□□□□ -0.01
USP53-209ENST00000514665 ACEP12821 1306 aa14.96□□□□□ -0.01
USP53-209ENST00000514665 PHF8Q9UPP1 1060 aa14.96□□□□□ -0.01
USP53-209ENST00000514665 PPFIA3O75145 1194 aa14.96□□□□□ -0.01
USP53-209ENST00000514665 CKAP2LQ8IYA6 745 aa14.96□□□□□ -0.01
USP53-209ENST00000514665 CEP57L1Q8IYX8 460 aa14.96□□□□□ -0.01
USP53-209ENST00000514665 ANKRD36BQ8N2N9 1353 aa14.96□□□□□ -0.02
USP53-209ENST00000514665 POLKQ9UBT6 870 aa14.96□□□□□ -0.02
USP53-209ENST00000514665 DBF4Q9UBU7 674 aaPredicted RBP14.96□□□□□ -0.02
USP53-209ENST00000514665 DMRT2Q9Y5R5 561 aa14.96□□□□□ -0.02
USP53-209ENST00000514665 KDM5BQ9UGL1 1544 aa14.95□□□□□ -0.02
USP53-209ENST00000514665 HSP90B2PQ58FF3 399 aa14.95□□□□□ -0.02
USP53-209ENST00000514665 PHACTR3Q96KR7 559 aa14.95□□□□□ -0.02
USP53-209ENST00000514665 XRCC6P12956 609 aaKnown RBP eCLIP14.95□□□□□ -0.02
USP53-209ENST00000514665 NACAP1Q9BZK3 213 aa14.95□□□□□ -0.02
USP53-209ENST00000514665 ECHDC1Q9NTX5 307 aa14.95□□□□□ -0.02
USP53-209ENST00000514665 CTNNA3Q9UI47 895 aa14.95□□□□□ -0.02
USP53-209ENST00000514665 ARHGAP45Q92619 1136 aa14.94□□□□□ -0.02
USP53-209ENST00000514665 JARID2Q92833 1246 aaPredicted RBP14.94□□□□□ -0.02
USP53-209ENST00000514665 OFD1O75665 1012 aa14.94□□□□□ -0.02
USP53-209ENST00000514665 FILIP1LQ4L180 1135 aa14.94□□□□□ -0.02
USP53-209ENST00000514665 POLR3AO14802 1390 aaPredicted RBP14.94□□□□□ -0.02
USP53-209ENST00000514665 CCDC183Q5T5S1 534 aa14.93□□□□□ -0.02
USP53-209ENST00000514665 CCDC69A6NI79 296 aa14.93□□□□□ -0.02
USP53-209ENST00000514665 TDO2P48775 406 aa14.93□□□□□ -0.02
USP53-209ENST00000514665 TCOF1Q13428 1488 aaKnown RBP14.93□□□□□ -0.02
USP53-209ENST00000514665 ANKRD44Q8N8A2 993 aa14.93□□□□□ -0.02
USP53-209ENST00000514665 RAPGEF6Q8TEU7 1601 aa14.93□□□□□ -0.02
USP53-209ENST00000514665 TMX3Q96JJ7 454 aa14.93□□□□□ -0.02
USP53-209ENST00000514665 SYCP2Q9BX26 1530 aa14.93□□□□□ -0.02
USP53-209ENST00000514665 VAMP4O75379 141 aa14.93□□□□□ -0.02
USP53-209ENST00000514665 KLHL40Q2TBA0 621 aa14.93□□□□□ -0.02
USP53-209ENST00000514665 MRPL50Q8N5N7 158 aaKnown RBP14.93□□□□□ -0.02
USP53-209ENST00000514665 PIBF1Q8WXW3 757 aa14.93□□□□□ -0.02
USP53-209ENST00000514665 TCEANC2Q96MN5 208 aa14.93□□□□□ -0.02
USP53-209ENST00000514665 TRAPPC8Q9Y2L5 1435 aa14.92□□□□□ -0.02
USP53-209ENST00000514665 A0A087WZG4 1122 aa14.92□□□□□ -0.02
USP53-209ENST00000514665 PDE1AP54750 535 aa14.92□□□□□ -0.02
USP53-209ENST00000514665 SCAND2PQ9GZW5 306 aaPredicted RBP14.92□□□□□ -0.02
USP53-209ENST00000514665 SH2B1Q9NRF2 756 aaPredicted RBP14.92□□□□□ -0.02
USP53-209ENST00000514665 TCEAL9Q9UHQ7 104 aa14.92□□□□□ -0.02
USP53-209ENST00000514665 IFIT1P09914 478 aaKnown RBP14.92□□□□□ -0.02
USP53-209ENST00000514665 CCDC82Q8N4S0 544 aa14.92□□□□□ -0.02
USP53-209ENST00000514665 ABCF2Q9UG63 623 aa14.92□□□□□ -0.02
USP53-209ENST00000514665 MAP3K2Q9Y2U5 619 aa14.92□□□□□ -0.02
USP53-209ENST00000514665 U3KPZ7 1027 aaPredicted RBP14.92□□□□□ -0.02
USP53-209ENST00000514665 ATP5J2-PTCD1G3V325 749 aa14.91□□□□□ -0.02
USP53-209ENST00000514665 METTL24Q5JXM2 366 aa14.91□□□□□ -0.02
USP53-209ENST00000514665 STX6O43752 255 aa14.91□□□□□ -0.02
USP53-209ENST00000514665 CCT2P78371 535 aaKnown RBP14.91□□□□□ -0.02
USP53-209ENST00000514665 CAGE1Q8TC20 777 aa14.91□□□□□ -0.02
USP53-209ENST00000514665 ZBTB40Q9NUA8 1239 aa14.91□□□□□ -0.02
USP53-209ENST00000514665 PZPP20742 1482 aa14.91□□□□□ -0.02
USP53-209ENST00000514665 TXLNAP40222 546 aa14.91□□□□□ -0.02
USP53-209ENST00000514665 IMMTQ16891 758 aaKnown RBP14.91□□□□□ -0.02
USP53-209ENST00000514665 RHPN1Q8TCX5 695 aa14.91□□□□□ -0.02
USP53-209ENST00000514665 PLCH2O75038 1416 aa14.91□□□□□ -0.02
USP53-209ENST00000514665 AMOTQ4VCS5 1084 aa14.9□□□□□ -0.02
USP53-209ENST00000514665 SMC5Q8IY18 1101 aa14.9□□□□□ -0.02
USP53-209ENST00000514665 IKQ13123 557 aaPredicted RBP14.9□□□□□ -0.02
USP53-209ENST00000514665 GNL3LQ9NVN8 582 aaKnown RBP14.9□□□□□ -0.02
USP53-209ENST00000514665 TTC21BQ7Z4L5 1316 aa14.9□□□□□ -0.02
USP53-209ENST00000514665 NUP160Q12769 1436 aa14.9□□□□□ -0.02
USP53-209ENST00000514665 ZSCAN25Q6NSZ9 544 aa14.9□□□□□ -0.02
USP53-209ENST00000514665 UBE3BQ7Z3V4 1068 aa14.9□□□□□ -0.02
USP53-209ENST00000514665 SNRKQ9NRH2 765 aa14.9□□□□□ -0.02
USP53-209ENST00000514665 LRP2BPQ9P2M1 347 aa14.9□□□□□ -0.02
USP53-209ENST00000514665 GJB2P29033 226 aa14.9□□□□□ -0.02
USP53-209ENST00000514665 UBAC1Q9BSL1 405 aa14.9□□□□□ -0.02
USP53-209ENST00000514665 HCLS1P14317 486 aaPredicted RBP14.89□□□□□ -0.03
USP53-209ENST00000514665 RUFY1Q96T51 708 aa14.89□□□□□ -0.03
USP53-209ENST00000514665 RRP9O43818 475 aaKnown RBP14.89□□□□□ -0.03
USP53-209ENST00000514665 CFAP100Q494V2 611 aa14.89□□□□□ -0.03
USP53-209ENST00000514665 PPFIBP1Q86W92 1011 aa14.89□□□□□ -0.03
USP53-209ENST00000514665 NECAB1Q8N987 351 aa14.89□□□□□ -0.03
USP53-209ENST00000514665 ZBTB3Q9H5J0 574 aa14.89□□□□□ -0.03
USP53-209ENST00000514665 EIF4A2Q14240 407 aaKnown RBP14.89□□□□□ -0.03
USP53-209ENST00000514665 AIDAQ96BJ3 306 aa14.89□□□□□ -0.03
USP53-209ENST00000514665 RAI14Q9P0K7 980 aa14.89□□□□□ -0.03
USP53-209ENST00000514665 NCKAP5LQ9HCH0 1330 aa14.89□□□□□ -0.03
USP53-209ENST00000514665 CDKL5O76039 1030 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms