RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 SLC4A9Q96Q91 983 aa15.08■□□□□ 0
NEDD9-215ENST00000514660 RNF181Q9P0P0 153 aa15.08■□□□□ 0
NEDD9-215ENST00000514660 ASAP1Q9ULH1 1129 aa15.08■□□□□ 0
NEDD9-215ENST00000514660 PCDH11XQ9BZA7 1347 aa15.08■□□□□ 0
NEDD9-215ENST00000514660 PCDH11YQ9BZA8 1340 aa15.08■□□□□ 0
NEDD9-215ENST00000514660 PLEKHG2Q9H7P9 1386 aa15.08■□□□□ 0
NEDD9-215ENST00000514660 TATP17735 454 aaPredicted RBP15.07■□□□□ 0
NEDD9-215ENST00000514660 SMC1BQ8NDV3 1235 aa15.07■□□□□ 0
NEDD9-215ENST00000514660 RAPGEF4Q8WZA2 1011 aa15.07■□□□□ 0
NEDD9-215ENST00000514660 DCAF5Q96JK2 942 aa15.07■□□□□ 0
NEDD9-215ENST00000514660 CGNL1Q0VF96 1302 aa15.07■□□□□ 0
NEDD9-215ENST00000514660 MYH14Q7Z406 1995 aaKnown RBP15.06■□□□□ 0
NEDD9-215ENST00000514660 HSP90AB2PQ58FF8 381 aa15.06■□□□□ 0
NEDD9-215ENST00000514660 GYS1P13807 737 aa15.05■□□□□ -0
NEDD9-215ENST00000514660 NKX1-1Q15270 411 aaPredicted RBP15.05■□□□□ -0
NEDD9-215ENST00000514660 KDM2BQ8NHM5 1336 aa15.05■□□□□ -0
NEDD9-215ENST00000514660 RTL1A6NKG5 1358 aa15.04■□□□□ -0
NEDD9-215ENST00000514660 ARHGEF1Q92888 912 aaKnown RBP15.04■□□□□ -0
NEDD9-215ENST00000514660 COG3Q96JB2 828 aa15.04■□□□□ -0
NEDD9-215ENST00000514660 SIN3AQ96ST3 1273 aa15.04■□□□□ -0
NEDD9-215ENST00000514660 KDRP35968 1356 aa15.03■□□□□ -0
NEDD9-215ENST00000514660 POTECB2RU33 542 aa15.03■□□□□ -0
NEDD9-215ENST00000514660 CHRNA5P30532 468 aa15.03■□□□□ -0
NEDD9-215ENST00000514660 ATP6V1AP38606 617 aa15.03■□□□□ -0
NEDD9-215ENST00000514660 TMF1P82094 1093 aa15.03■□□□□ -0
NEDD9-215ENST00000514660 RASSF7Q02833 373 aa15.03■□□□□ -0
NEDD9-215ENST00000514660 ATG3Q9NT62 314 aa15.03■□□□□ -0
NEDD9-215ENST00000514660 TERF2IPQ9NYB0 399 aa15.03■□□□□ -0
NEDD9-215ENST00000514660 COL5A3P25940 1745 aaPredicted RBP15.03■□□□□ -0
NEDD9-215ENST00000514660 CCDC88AQ3V6T2 1871 aa15.02■□□□□ -0
NEDD9-215ENST00000514660 FOXN1O15353 648 aa15.02■□□□□ -0
NEDD9-215ENST00000514660 NLGN1Q8N2Q7 840 aa15.02■□□□□ -0
NEDD9-215ENST00000514660 KDM6AO15550 1401 aaPredicted RBP15.01□□□□□ -0.01
NEDD9-215ENST00000514660 DDR1Q08345 913 aa15.01□□□□□ -0.01
NEDD9-215ENST00000514660 CCDC87Q9NVE4 849 aa15.01□□□□□ -0.01
NEDD9-215ENST00000514660 NCAPD2Q15021 1401 aa15□□□□□ -0.01
NEDD9-215ENST00000514660 INSRP06213 1382 aa15□□□□□ -0.01
NEDD9-215ENST00000514660 HMGB2P26583 209 aaKnown RBP15□□□□□ -0.01
NEDD9-215ENST00000514660 TRAPPC3LQ5T215 181 aa15□□□□□ -0.01
NEDD9-215ENST00000514660 PIM2Q9P1W9 311 aa15□□□□□ -0.01
NEDD9-215ENST00000514660 FYB1O15117 783 aa14.99□□□□□ -0.01
NEDD9-215ENST00000514660 DALRD3Q5D0E6 543 aaKnown RBP14.99□□□□□ -0.01
NEDD9-215ENST00000514660 GGNBP2Q9H3C7 697 aa14.99□□□□□ -0.01
NEDD9-215ENST00000514660 SRP68Q9UHB9 627 aaKnown RBP14.98□□□□□ -0.01
NEDD9-215ENST00000514660 MKRN1Q9UHC7 482 aaKnown RBP14.98□□□□□ -0.01
NEDD9-215ENST00000514660 RTCBQ9Y3I0 505 aaKnown RBP14.98□□□□□ -0.01
NEDD9-215ENST00000514660 TIAM2Q8IVF5 1701 aa14.97□□□□□ -0.01
NEDD9-215ENST00000514660 ADAMTS7Q9UKP4 1686 aa14.97□□□□□ -0.01
NEDD9-215ENST00000514660 GLTPD2A6NH11 291 aa14.97□□□□□ -0.01
NEDD9-215ENST00000514660 FKBP8Q14318 412 aa14.97□□□□□ -0.01
NEDD9-215ENST00000514660 FAM161AQ3B820 660 aa14.97□□□□□ -0.01
NEDD9-215ENST00000514660 TMOD3Q9NYL9 352 aa14.97□□□□□ -0.01
NEDD9-215ENST00000514660 PARP3Q9Y6F1 533 aa14.97□□□□□ -0.01
NEDD9-215ENST00000514660 ZNF831Q5JPB2 1677 aa14.97□□□□□ -0.01
NEDD9-215ENST00000514660 VEGFAP15692 232 aaPredicted RBP14.96□□□□□ -0.01
NEDD9-215ENST00000514660 SMG6Q86US8 1419 aaKnown RBP14.95□□□□□ -0.02
NEDD9-215ENST00000514660 RPS6KA4O75676 772 aa14.95□□□□□ -0.02
NEDD9-215ENST00000514660 POTEIP0CG38 1075 aa14.95□□□□□ -0.02
NEDD9-215ENST00000514660 POTEJP0CG39 1038 aa14.95□□□□□ -0.02
NEDD9-215ENST00000514660 TESK2Q96S53 571 aa14.95□□□□□ -0.02
NEDD9-215ENST00000514660 PHKG2P15735 406 aa14.94□□□□□ -0.02
NEDD9-215ENST00000514660 RC3H1Q5TC82 1133 aaKnown RBP14.94□□□□□ -0.02
NEDD9-215ENST00000514660 PUS7Q96PZ0 661 aaKnown RBP14.94□□□□□ -0.02
NEDD9-215ENST00000514660 PRDM10Q9NQV6 1147 aa14.94□□□□□ -0.02
NEDD9-215ENST00000514660 EMILIN1Q9Y6C2 1016 aa14.94□□□□□ -0.02
NEDD9-215ENST00000514660 CNTNAP4Q9C0A0 1308 aa14.93□□□□□ -0.02
NEDD9-215ENST00000514660 RFC4P35249 363 aa14.93□□□□□ -0.02
NEDD9-215ENST00000514660 CARD11Q9BXL7 1154 aa14.93□□□□□ -0.02
NEDD9-215ENST00000514660 AFDNP55196 1824 aaKnown RBP14.93□□□□□ -0.02
NEDD9-215ENST00000514660 FLT4P35916 1363 aa14.93□□□□□ -0.02
NEDD9-215ENST00000514660 VIRMAQ69YN4 1812 aaKnown RBP14.92□□□□□ -0.02
NEDD9-215ENST00000514660 DLEC1Q9Y238 1755 aa14.91□□□□□ -0.02
NEDD9-215ENST00000514660 NFKBIEO00221 500 aa14.91□□□□□ -0.02
NEDD9-215ENST00000514660 POLRMTO00411 1230 aaKnown RBP14.91□□□□□ -0.02
NEDD9-215ENST00000514660 TM4SF1P30408 202 aa14.91□□□□□ -0.02
NEDD9-215ENST00000514660 NEUROD1Q13562 356 aa14.91□□□□□ -0.02
NEDD9-215ENST00000514660 RBM42Q9BTD8 480 aaKnown RBP14.91□□□□□ -0.02
NEDD9-215ENST00000514660 CREBZFQ9NS37 354 aa14.91□□□□□ -0.02
NEDD9-215ENST00000514660 USP42Q9H9J4 1324 aaKnown RBP14.91□□□□□ -0.02
NEDD9-215ENST00000514660 ZC3H4Q9UPT8 1303 aaKnown RBP14.91□□□□□ -0.02
NEDD9-215ENST00000514660 KIF20BQ96Q89 1820 aa14.9□□□□□ -0.02
NEDD9-215ENST00000514660 CNTNAP1P78357 1384 aa14.9□□□□□ -0.02
NEDD9-215ENST00000514660 TONSLQ96HA7 1378 aa14.9□□□□□ -0.02
NEDD9-215ENST00000514660 LMNB1P20700 586 aa14.9□□□□□ -0.02
NEDD9-215ENST00000514660 EYA1Q99502 592 aa14.9□□□□□ -0.02
NEDD9-215ENST00000514660 SPG7Q9UQ90 795 aa14.9□□□□□ -0.02
NEDD9-215ENST00000514660 TJP1Q07157 1748 aa14.89□□□□□ -0.03
NEDD9-215ENST00000514660 LBX1P52954 281 aa14.89□□□□□ -0.03
NEDD9-215ENST00000514660 ABHD8Q96I13 439 aa14.89□□□□□ -0.03
NEDD9-215ENST00000514660 PCDH10Q9P2E7 1040 aa14.89□□□□□ -0.03
NEDD9-215ENST00000514660 NRXN2Q9P2S2 1712 aa14.89□□□□□ -0.03
NEDD9-215ENST00000514660 ANKRD26Q9UPS8 1709 aa14.89□□□□□ -0.03
NEDD9-215ENST00000514660 DICER1Q9UPY3 1922 aaKnown RBP14.88□□□□□ -0.03
NEDD9-215ENST00000514660 KIF24Q5T7B8 1368 aa14.87□□□□□ -0.03
NEDD9-215ENST00000514660 CRKLP46109 303 aaKnown RBP14.87□□□□□ -0.03
NEDD9-215ENST00000514660 VEGFBP49765 207 aa14.87□□□□□ -0.03
NEDD9-215ENST00000514660 IFNL2Q8IZJ0 200 aa14.87□□□□□ -0.03
NEDD9-215ENST00000514660 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.87□□□□□ -0.03
NEDD9-215ENST00000514660 CARMIL3Q8ND23 1372 aa14.86□□□□□ -0.03
NEDD9-215ENST00000514660 CTCFP49711 727 aaPredicted RBP14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms