RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 TAF7Q15545 349 aaPredicted RBP16.91■□□□□ 0.3
LIMCH1-220ENST00000514190 LAS1LQ9Y4W2 734 aaKnown RBP16.91■□□□□ 0.3
LIMCH1-220ENST00000514190 BABAM1Q9NWV8 329 aa16.9■□□□□ 0.3
LIMCH1-220ENST00000514190 SRCAPQ6ZRS2 3230 aa16.89■□□□□ 0.29
LIMCH1-220ENST00000514190 TRIM37O94972 964 aa16.89■□□□□ 0.29
LIMCH1-220ENST00000514190 TEFQ10587 303 aa16.89■□□□□ 0.29
LIMCH1-220ENST00000514190 TSR2Q969E8 191 aaKnown RBP16.89■□□□□ 0.29
LIMCH1-220ENST00000514190 FANCIQ9NVI1 1328 aa16.89■□□□□ 0.29
LIMCH1-220ENST00000514190 KDM6AO15550 1401 aaPredicted RBP16.88■□□□□ 0.29
LIMCH1-220ENST00000514190 TNS2Q63HR2 1409 aa16.88■□□□□ 0.29
LIMCH1-220ENST00000514190 MBIPQ9NS73 344 aa16.88■□□□□ 0.29
LIMCH1-220ENST00000514190 ERVV-2B6SEH9 535 aa16.87■□□□□ 0.29
LIMCH1-220ENST00000514190 EN1Q05925 392 aaPredicted RBP16.87■□□□□ 0.29
LIMCH1-220ENST00000514190 SLC52A2Q9HAB3 445 aa16.87■□□□□ 0.29
LIMCH1-220ENST00000514190 MARCH10Q8NA82 808 aaPredicted RBP16.86■□□□□ 0.29
LIMCH1-220ENST00000514190 MIS18AQ9NYP9 233 aa16.86■□□□□ 0.29
LIMCH1-220ENST00000514190 TSPYL4Q9UJ04 414 aa16.86■□□□□ 0.29
LIMCH1-220ENST00000514190 ADAMTS7Q9UKP4 1686 aa16.85■□□□□ 0.29
LIMCH1-220ENST00000514190 SBF2Q86WG5 1849 aa16.85■□□□□ 0.29
LIMCH1-220ENST00000514190 CABP4P57796 275 aa16.85■□□□□ 0.29
LIMCH1-220ENST00000514190 EXOSC9Q06265 439 aaKnown RBP16.85■□□□□ 0.29
LIMCH1-220ENST00000514190 NFATC2IPQ8NCF5 419 aa16.85■□□□□ 0.29
LIMCH1-220ENST00000514190 APBA3O96018 575 aa16.84■□□□□ 0.29
LIMCH1-220ENST00000514190 BCL9O00512 1426 aa16.84■□□□□ 0.29
LIMCH1-220ENST00000514190 SHANK3Q9BYB0 1731 aa16.84■□□□□ 0.29
LIMCH1-220ENST00000514190 BTBD11A6QL63 1104 aa16.83■□□□□ 0.28
LIMCH1-220ENST00000514190 CT47B1P0C2W7 299 aaPredicted RBP16.82■□□□□ 0.28
LIMCH1-220ENST00000514190 EZH2Q15910 746 aaKnown RBP16.82■□□□□ 0.28
LIMCH1-220ENST00000514190 CAMKK2Q96RR4 588 aa16.82■□□□□ 0.28
LIMCH1-220ENST00000514190 RCAN3Q9UKA8 241 aa16.82■□□□□ 0.28
LIMCH1-220ENST00000514190 C8orf58Q8NAV2 365 aa16.81■□□□□ 0.28
LIMCH1-220ENST00000514190 RREB1Q92766 1687 aa16.81■□□□□ 0.28
LIMCH1-220ENST00000514190 MRC1P22897 1456 aa16.8■□□□□ 0.28
LIMCH1-220ENST00000514190 SCN11AQ9UI33 1791 aa16.8■□□□□ 0.28
LIMCH1-220ENST00000514190 KCNQ3O43525 872 aa16.8■□□□□ 0.28
LIMCH1-220ENST00000514190 RGPD3A6NKT7 1758 aaPredicted RBP16.79■□□□□ 0.28
LIMCH1-220ENST00000514190 RGPD4Q7Z3J3 1758 aa16.79■□□□□ 0.28
LIMCH1-220ENST00000514190 VAMP4O75379 141 aa16.79■□□□□ 0.28
LIMCH1-220ENST00000514190 EIF4A1P60842 406 aaKnown RBP16.79■□□□□ 0.28
LIMCH1-220ENST00000514190 TSPYL6Q8N831 410 aa16.79■□□□□ 0.28
LIMCH1-220ENST00000514190 TMOD3Q9NYL9 352 aa16.79■□□□□ 0.28
LIMCH1-220ENST00000514190 PRIM1P49642 420 aaKnown RBP16.78■□□□□ 0.28
LIMCH1-220ENST00000514190 SLC39A6Q13433 755 aa16.78■□□□□ 0.28
LIMCH1-220ENST00000514190 ZNF790Q6PG37 636 aa16.78■□□□□ 0.28
LIMCH1-220ENST00000514190 PIGBQ92521 554 aa16.78■□□□□ 0.28
LIMCH1-220ENST00000514190 ZNF428Q96B54 188 aa16.78■□□□□ 0.28
LIMCH1-220ENST00000514190 BCL11BQ9C0K0 894 aaPredicted RBP16.78■□□□□ 0.28
LIMCH1-220ENST00000514190 NUP188Q5SRE5 1749 aa16.77■□□□□ 0.28
LIMCH1-220ENST00000514190 ELL2O00472 640 aaPredicted RBP16.77■□□□□ 0.28
LIMCH1-220ENST00000514190 KRT24Q2M2I5 525 aa16.77■□□□□ 0.28
LIMCH1-220ENST00000514190 TWISTNBQ3B726 338 aaPredicted RBP16.77■□□□□ 0.28
LIMCH1-220ENST00000514190 SOS1Q07889 1333 aaPredicted RBP16.76■□□□□ 0.27
LIMCH1-220ENST00000514190 RARSP54136 660 aaKnown RBP16.76■□□□□ 0.27
LIMCH1-220ENST00000514190 SUPT16HQ9Y5B9 1047 aaKnown RBP16.76■□□□□ 0.27
LIMCH1-220ENST00000514190 NHSQ6T4R5 1651 aa16.75■□□□□ 0.27
LIMCH1-220ENST00000514190 PSDA5PKW4 1024 aaPredicted RBP16.75■□□□□ 0.27
LIMCH1-220ENST00000514190 PLSCR1O15162 318 aa16.75■□□□□ 0.27
LIMCH1-220ENST00000514190 PTF1AQ7RTS3 328 aa16.75■□□□□ 0.27
LIMCH1-220ENST00000514190 TTC5Q8N0Z6 440 aa16.75■□□□□ 0.27
LIMCH1-220ENST00000514190 HEG1Q9ULI3 1381 aa16.75■□□□□ 0.27
LIMCH1-220ENST00000514190 SIPA1L3O60292 1781 aaPredicted RBP16.74■□□□□ 0.27
LIMCH1-220ENST00000514190 SYTL4Q96C24 671 aaPredicted RBP16.74■□□□□ 0.27
LIMCH1-220ENST00000514190 ACSBG1Q96GR2 724 aa16.74■□□□□ 0.27
LIMCH1-220ENST00000514190 ATG3Q9NT62 314 aa16.74■□□□□ 0.27
LIMCH1-220ENST00000514190 GIGYF1O75420 1035 aaPredicted RBP16.73■□□□□ 0.27
LIMCH1-220ENST00000514190 HOXB7P09629 217 aa16.73■□□□□ 0.27
LIMCH1-220ENST00000514190 ALDH1L2Q3SY69 923 aa16.73■□□□□ 0.27
LIMCH1-220ENST00000514190 SSH1Q8WYL5 1049 aa16.73■□□□□ 0.27
LIMCH1-220ENST00000514190 ZNF496Q96IT1 587 aaPredicted RBP16.73■□□□□ 0.27
LIMCH1-220ENST00000514190 TOGARAM1Q9Y4F4 1720 aa16.73■□□□□ 0.27
LIMCH1-220ENST00000514190 RNF123Q5XPI4 1314 aa16.72■□□□□ 0.27
LIMCH1-220ENST00000514190 KCNQ2O43526 872 aa16.72■□□□□ 0.27
LIMCH1-220ENST00000514190 BCAR3O75815 825 aa16.72■□□□□ 0.27
LIMCH1-220ENST00000514190 R3HDM1Q15032 1099 aaKnown RBP16.72■□□□□ 0.27
LIMCH1-220ENST00000514190 FMNL2Q96PY5 1086 aa16.72■□□□□ 0.27
LIMCH1-220ENST00000514190 CHMP4AQ9BY43 222 aa16.72■□□□□ 0.27
LIMCH1-220ENST00000514190 ASAP1Q9ULH1 1129 aa16.72■□□□□ 0.27
LIMCH1-220ENST00000514190 VIRMAQ69YN4 1812 aaKnown RBP16.72■□□□□ 0.27
LIMCH1-220ENST00000514190 KDM3BQ7LBC6 1761 aa16.72■□□□□ 0.27
LIMCH1-220ENST00000514190 SNRPA1P09661 255 aaKnown RBP16.7■□□□□ 0.26
LIMCH1-220ENST00000514190 BRPF1P55201 1214 aaPredicted RBP16.7■□□□□ 0.26
LIMCH1-220ENST00000514190 NBPF14Q5TI25 921 aa16.7■□□□□ 0.26
LIMCH1-220ENST00000514190 LRP5O75197 1615 aa16.7■□□□□ 0.26
LIMCH1-220ENST00000514190 KAT6BQ8WYB5 2073 aa16.69■□□□□ 0.26
LIMCH1-220ENST00000514190 CCDC30Q5VVM6 783 aa16.69■□□□□ 0.26
LIMCH1-220ENST00000514190 SMC4Q9NTJ3 1288 aa16.69■□□□□ 0.26
LIMCH1-220ENST00000514190 BTAF1O14981 1849 aa16.68■□□□□ 0.26
LIMCH1-220ENST00000514190 PTCD1O75127 700 aaKnown RBP16.68■□□□□ 0.26
LIMCH1-220ENST00000514190 RRP1P56182 461 aaKnown RBP16.68■□□□□ 0.26
LIMCH1-220ENST00000514190 MRPL50Q8N5N7 158 aaKnown RBP16.68■□□□□ 0.26
LIMCH1-220ENST00000514190 SMARCC1Q92922 1105 aaPredicted RBP16.68■□□□□ 0.26
LIMCH1-220ENST00000514190 BCL2L13Q9BXK5 485 aa16.68■□□□□ 0.26
LIMCH1-220ENST00000514190 PRAMEF22A3QJZ6 481 aa16.67■□□□□ 0.26
LIMCH1-220ENST00000514190 TCERG1O14776 1098 aaKnown RBP16.67■□□□□ 0.26
LIMCH1-220ENST00000514190 EIF2S2P20042 333 aaKnown RBP16.67■□□□□ 0.26
LIMCH1-220ENST00000514190 HDGFL1Q5TGJ6 251 aa16.67■□□□□ 0.26
LIMCH1-220ENST00000514190 VSIG10Q8N0Z9 540 aa16.67■□□□□ 0.26
LIMCH1-220ENST00000514190 DOT1LQ8TEK3 1739 aa16.67■□□□□ 0.26
LIMCH1-220ENST00000514190 ITGB4P16144 1822 aa16.66■□□□□ 0.26
LIMCH1-220ENST00000514190 PROM2Q8N271 834 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms