RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 HSP90AB2PQ58FF8 381 aa10.01□□□□□ -0.81
LIMCH1-216ENST00000512820 SYNE3Q6ZMZ3 975 aa10.01□□□□□ -0.81
LIMCH1-216ENST00000512820 SBNO2Q9Y2G9 1366 aa10.01□□□□□ -0.81
LIMCH1-216ENST00000512820 OTUD7AQ8TE49 926 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-216ENST00000512820 USP19O94966 1318 aa10.01□□□□□ -0.81
LIMCH1-216ENST00000512820 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10□□□□□ -0.81
LIMCH1-216ENST00000512820 MAP3K11Q16584 847 aa10□□□□□ -0.81
LIMCH1-216ENST00000512820 SPG7Q9UQ90 795 aa10□□□□□ -0.81
LIMCH1-216ENST00000512820 ZFYVE9O95405 1425 aa10□□□□□ -0.81
LIMCH1-216ENST00000512820 CAMK4Q16566 473 aa10□□□□□ -0.81
LIMCH1-216ENST00000512820 BTBD11A6QL63 1104 aa10□□□□□ -0.81
LIMCH1-216ENST00000512820 STX6O43752 255 aa10□□□□□ -0.81
LIMCH1-216ENST00000512820 TTC21BQ7Z4L5 1316 aa10□□□□□ -0.81
LIMCH1-216ENST00000512820 EIF4A2Q14240 407 aaKnown RBP10□□□□□ -0.81
LIMCH1-216ENST00000512820 CREBRFQ8IUR6 639 aa10□□□□□ -0.81
LIMCH1-216ENST00000512820 NLRP2Q9NX02 1062 aa10□□□□□ -0.81
LIMCH1-216ENST00000512820 KDM5AP29375 1690 aaKnown RBP10□□□□□ -0.81
LIMCH1-216ENST00000512820 APPP05067 770 aa9.99□□□□□ -0.81
LIMCH1-216ENST00000512820 TRDNQ13061 729 aa9.99□□□□□ -0.81
LIMCH1-216ENST00000512820 CCAR2Q8N163 923 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-216ENST00000512820 SH2B1Q9NRF2 756 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-216ENST00000512820 ADCY5O95622 1261 aa9.99□□□□□ -0.81
LIMCH1-216ENST00000512820 ANAPC15P60006 121 aa9.99□□□□□ -0.81
LIMCH1-216ENST00000512820 TRIM29Q14134 588 aa9.99□□□□□ -0.81
LIMCH1-216ENST00000512820 WASHC4Q2M389 1173 aa9.99□□□□□ -0.81
LIMCH1-216ENST00000512820 PPP1R42Q7Z4L9 355 aa9.99□□□□□ -0.81
LIMCH1-216ENST00000512820 ZKSCAN5Q9Y2L8 839 aa9.99□□□□□ -0.81
LIMCH1-216ENST00000512820 ATP7AQ04656 1500 aa9.99□□□□□ -0.81
LIMCH1-216ENST00000512820 PDIA4P13667 645 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-216ENST00000512820 ZNF396Q96N95 335 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-216ENST00000512820 ACEP12821 1306 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 OFD1O75665 1012 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 ESCO1Q5FWF5 840 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 RALYLQ86SE5 291 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 DNAAF4Q8WXU2 420 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 PPIP5K1Q6PFW1 1433 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 HS1BP3Q53T59 392 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 USP48Q86UV5 1035 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 UVSSAQ2YD98 709 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 USHBP1Q8N6Y0 703 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 CCDC112Q8NEF3 446 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 FMNL2Q96PY5 1086 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 PLEKHF1Q96S99 279 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 LRRIQ1Q96JM4 1722 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 FSD2A1L4K1 749 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 HCLS1P14317 486 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 GJB2P29033 226 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 IL13P35225 146 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 UBE2HP62256 183 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 ATP8B2P98198 1209 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 RBSNQ9H1K0 784 aa9.98□□□□□ -0.81
LIMCH1-216ENST00000512820 TRPM1Q7Z4N2 1603 aa9.97□□□□□ -0.81
LIMCH1-216ENST00000512820 SMC2O95347 1197 aa9.97□□□□□ -0.81
LIMCH1-216ENST00000512820 NPHP1O15259 732 aa9.97□□□□□ -0.81
LIMCH1-216ENST00000512820 ZSCAN22P10073 491 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-216ENST00000512820 ME1P48163 572 aa9.97□□□□□ -0.81
LIMCH1-216ENST00000512820 RHPN1Q8TCX5 695 aa9.97□□□□□ -0.81
LIMCH1-216ENST00000512820 BOLA2Q9H3K6 86 aa9.97□□□□□ -0.81
LIMCH1-216ENST00000512820 YTHDC2Q9H6S0 1430 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-216ENST00000512820 DYNC1I1O14576 645 aa9.97□□□□□ -0.81
LIMCH1-216ENST00000512820 MYL6BP14649 208 aa9.97□□□□□ -0.81
LIMCH1-216ENST00000512820 KRT32Q14532 448 aa9.97□□□□□ -0.81
LIMCH1-216ENST00000512820 CFAP45Q9UL16 551 aa9.97□□□□□ -0.81
LIMCH1-216ENST00000512820 ABCC1P33527 1531 aa9.96□□□□□ -0.81
LIMCH1-216ENST00000512820 STK38Q15208 465 aa9.96□□□□□ -0.81
LIMCH1-216ENST00000512820 NFXL1Q6ZNB6 911 aa9.96□□□□□ -0.81
LIMCH1-216ENST00000512820 MNS1Q8NEH6 495 aa9.96□□□□□ -0.81
LIMCH1-216ENST00000512820 DDX11Q96FC9 970 aa9.96□□□□□ -0.81
LIMCH1-216ENST00000512820 ZNF830Q96NB3 372 aaPredicted RBP9.96□□□□□ -0.81
LIMCH1-216ENST00000512820 SCAND2PQ9GZW5 306 aaPredicted RBP9.96□□□□□ -0.81
LIMCH1-216ENST00000512820 CNPY2Q9Y2B0 182 aa9.96□□□□□ -0.81
LIMCH1-216ENST00000512820 PDCL2Q8N4E4 241 aa9.96□□□□□ -0.82
LIMCH1-216ENST00000512820 ECHDC1Q9NTX5 307 aa9.96□□□□□ -0.82
LIMCH1-216ENST00000512820 TRPM2O94759 1503 aa9.96□□□□□ -0.82
LIMCH1-216ENST00000512820 TTC37Q6PGP7 1564 aa9.96□□□□□ -0.82
LIMCH1-216ENST00000512820 ZNF445P59923 1031 aa9.96□□□□□ -0.82
LIMCH1-216ENST00000512820 GIMAP6Q6P9H5 292 aa9.96□□□□□ -0.82
LIMCH1-216ENST00000512820 GAS2L3Q86XJ1 694 aa9.96□□□□□ -0.82
LIMCH1-216ENST00000512820 CKAP2LQ8IYA6 745 aa9.96□□□□□ -0.82
LIMCH1-216ENST00000512820 CCDC8Q9H0W5 538 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-216ENST00000512820 NPATQ14207 1427 aa9.96□□□□□ -0.82
LIMCH1-216ENST00000512820 MSH6P52701 1360 aa9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 GSPT1P15170 499 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 AKAP17AQ02040 695 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 RASSF8Q8NHQ8 419 aa9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 ZMYND15Q9H091 742 aa9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 FOXO3O43524 673 aa9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 CHMLP26374 656 aa9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 MTHFSDQ2M296 383 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 FILIP1Q7Z7B0 1213 aa9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 LMBRD1Q9NUN5 540 aa9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 HOOK1Q9UJC3 728 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 NCKAP5LQ9HCH0 1330 aa9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 PIK3R4Q99570 1358 aa9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 PI4KAP2A4QPH2 592 aa9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 TNNT3P45378 269 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 THEMISQ8N1K5 641 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 PI4KAP1Q8N8J0 262 aa9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 INTS4Q96HW7 963 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-216ENST00000512820 ARGLU1Q9NWB6 273 aaPredicted RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms