RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 GPR162Q16538 588 aa15.28■□□□□ 0.04
LIMCH1-214ENST00000512228 PLEKHO1Q53GL0 409 aaPredicted RBP15.28■□□□□ 0.04
LIMCH1-214ENST00000512228 CC2D1BQ5T0F9 858 aaKnown RBP15.28■□□□□ 0.04
LIMCH1-214ENST00000512228 ZNF530Q6P9A1 599 aaPredicted RBP15.28■□□□□ 0.04
LIMCH1-214ENST00000512228 ZNF784Q8NCA9 323 aaPredicted RBP15.28■□□□□ 0.04
LIMCH1-214ENST00000512228 ERVV-2B6SEH9 535 aa15.27■□□□□ 0.04
LIMCH1-214ENST00000512228 CNGB1Q14028 1251 aaPredicted RBP15.27■□□□□ 0.04
LIMCH1-214ENST00000512228 AK7Q96M32 723 aa15.27■□□□□ 0.04
LIMCH1-214ENST00000512228 MYH14Q7Z406 1995 aaKnown RBP15.27■□□□□ 0.03
LIMCH1-214ENST00000512228 PELP1Q8IZL8 1130 aaKnown RBP15.26■□□□□ 0.03
LIMCH1-214ENST00000512228 NFATC2IPQ8NCF5 419 aa15.26■□□□□ 0.03
LIMCH1-214ENST00000512228 DCAF5Q96JK2 942 aa15.26■□□□□ 0.03
LIMCH1-214ENST00000512228 LGR6Q9HBX8 967 aa15.26■□□□□ 0.03
LIMCH1-214ENST00000512228 KDRP35968 1356 aa15.25■□□□□ 0.03
LIMCH1-214ENST00000512228 GNPATO15228 680 aa15.25■□□□□ 0.03
LIMCH1-214ENST00000512228 HMOX1P09601 288 aa15.25■□□□□ 0.03
LIMCH1-214ENST00000512228 RBM42Q9BTD8 480 aaKnown RBP15.25■□□□□ 0.03
LIMCH1-214ENST00000512228 CABP4P57796 275 aa15.24■□□□□ 0.03
LIMCH1-214ENST00000512228 AMOTQ4VCS5 1084 aa15.24■□□□□ 0.03
LIMCH1-214ENST00000512228 FLAD1Q8NFF5 587 aa15.24■□□□□ 0.03
LIMCH1-214ENST00000512228 WWC3Q9ULE0 1092 aa15.23■□□□□ 0.03
LIMCH1-214ENST00000512228 SCN11AQ9UI33 1791 aa15.22■□□□□ 0.03
LIMCH1-214ENST00000512228 PTCD1O75127 700 aaKnown RBP15.22■□□□□ 0.03
LIMCH1-214ENST00000512228 SSFA2P28290 1259 aa15.22■□□□□ 0.03
LIMCH1-214ENST00000512228 COL5A3P25940 1745 aaPredicted RBP15.21■□□□□ 0.03
LIMCH1-214ENST00000512228 HSP90AB1P08238 724 aaKnown RBP15.21■□□□□ 0.03
LIMCH1-214ENST00000512228 MTHFSDQ2M296 383 aaKnown RBP15.21■□□□□ 0.03
LIMCH1-214ENST00000512228 ARHGEF1Q92888 912 aaKnown RBP15.21■□□□□ 0.03
LIMCH1-214ENST00000512228 CD2APQ9Y5K6 639 aa15.21■□□□□ 0.03
LIMCH1-214ENST00000512228 VIRMAQ69YN4 1812 aaKnown RBP15.21■□□□□ 0.03
LIMCH1-214ENST00000512228 PLEKHG2Q9H7P9 1386 aa15.2■□□□□ 0.02
LIMCH1-214ENST00000512228 ZNF831Q5JPB2 1677 aa15.19■□□□□ 0.02
LIMCH1-214ENST00000512228 SLC39A6Q13433 755 aa15.19■□□□□ 0.02
LIMCH1-214ENST00000512228 C1orf141Q5JVX7 400 aa15.19■□□□□ 0.02
LIMCH1-214ENST00000512228 TRAPPC3LQ5T215 181 aa15.19■□□□□ 0.02
LIMCH1-214ENST00000512228 DIAPH1O60610 1272 aaKnown RBP15.18■□□□□ 0.02
LIMCH1-214ENST00000512228 RC3H1Q5TC82 1133 aaKnown RBP15.18■□□□□ 0.02
LIMCH1-214ENST00000512228 COL3A1P02461 1466 aaPredicted RBP15.17■□□□□ 0.02
LIMCH1-214ENST00000512228 RNMTO43148 476 aaKnown RBP15.17■□□□□ 0.02
LIMCH1-214ENST00000512228 RPS6KA4O75676 772 aa15.17■□□□□ 0.02
LIMCH1-214ENST00000512228 MMP10P09238 476 aa15.17■□□□□ 0.02
LIMCH1-214ENST00000512228 AKAP4Q5JQC9 854 aa15.17■□□□□ 0.02
LIMCH1-214ENST00000512228 INTS5Q6P9B9 1019 aaKnown RBP15.17■□□□□ 0.02
LIMCH1-214ENST00000512228 RTCBQ9Y3I0 505 aaKnown RBP15.17■□□□□ 0.02
LIMCH1-214ENST00000512228 TJP1Q07157 1748 aa15.17■□□□□ 0.02
LIMCH1-214ENST00000512228 GYS1P13807 737 aa15.16■□□□□ 0.02
LIMCH1-214ENST00000512228 SLC52A2Q9HAB3 445 aa15.16■□□□□ 0.02
LIMCH1-214ENST00000512228 SRP68Q9UHB9 627 aaKnown RBP15.16■□□□□ 0.02
LIMCH1-214ENST00000512228 CNTNAP4Q9C0A0 1308 aa15.16■□□□□ 0.02
LIMCH1-214ENST00000512228 HMGB2P26583 209 aaKnown RBP15.15■□□□□ 0.02
LIMCH1-214ENST00000512228 CRKLP46109 303 aaKnown RBP15.15■□□□□ 0.02
LIMCH1-214ENST00000512228 DNAJC10Q8IXB1 793 aa15.15■□□□□ 0.02
LIMCH1-214ENST00000512228 C4AP0C0L4 1744 aa15.14■□□□□ 0.01
LIMCH1-214ENST00000512228 KIAA1551Q9HCM1 1747 aa15.14■□□□□ 0.01
LIMCH1-214ENST00000512228 GOLGB1Q14789 3259 aaKnown RBP15.14■□□□□ 0.01
LIMCH1-214ENST00000512228 NPC1L1Q9UHC9 1359 aa15.14■□□□□ 0.01
LIMCH1-214ENST00000512228 N4BP2Q86UW6 1770 aaPredicted RBP15.14■□□□□ 0.01
LIMCH1-214ENST00000512228 ADAMTS7Q9UKP4 1686 aa15.14■□□□□ 0.01
LIMCH1-214ENST00000512228 IL17REQ8NFR9 667 aa15.14■□□□□ 0.01
LIMCH1-214ENST00000512228 PHACTR3Q96KR7 559 aa15.14■□□□□ 0.01
LIMCH1-214ENST00000512228 A0A0G2JLW4 131 aa15.13■□□□□ 0.01
LIMCH1-214ENST00000512228 GRIN3BO60391 1043 aa15.13■□□□□ 0.01
LIMCH1-214ENST00000512228 FKBP8Q14318 412 aa15.13■□□□□ 0.01
LIMCH1-214ENST00000512228 KIF13BQ9NQT8 1826 aa15.13■□□□□ 0.01
LIMCH1-214ENST00000512228 RFC4P35249 363 aa15.12■□□□□ 0.01
LIMCH1-214ENST00000512228 NLGN1Q8N2Q7 840 aa15.12■□□□□ 0.01
LIMCH1-214ENST00000512228 CICQ96RK0 1608 aaPredicted RBP15.11■□□□□ 0.01
LIMCH1-214ENST00000512228 U2SURPO15042 1029 aaKnown RBP15.11■□□□□ 0.01
LIMCH1-214ENST00000512228 CYP19A1P11511 503 aaPredicted RBP15.11■□□□□ 0.01
LIMCH1-214ENST00000512228 KCPQ6ZWJ8 1503 aa15.11■□□□□ 0.01
LIMCH1-214ENST00000512228 MRC1P22897 1456 aa15.1■□□□□ 0.01
LIMCH1-214ENST00000512228 ADRA2BP18089 450 aa15.1■□□□□ 0.01
LIMCH1-214ENST00000512228 KCNA3P22001 575 aa15.1■□□□□ 0.01
LIMCH1-214ENST00000512228 DDR1Q08345 913 aa15.1■□□□□ 0.01
LIMCH1-214ENST00000512228 PXDNLA1KZ92 1463 aa15.09■□□□□ 0.01
LIMCH1-214ENST00000512228 KCNQ3O43525 872 aa15.09■□□□□ 0.01
LIMCH1-214ENST00000512228 DPEP1P16444 411 aa15.09■□□□□ 0.01
LIMCH1-214ENST00000512228 PPP2R1AP30153 589 aa15.09■□□□□ 0.01
LIMCH1-214ENST00000512228 TM4SF1P30408 202 aa15.08■□□□□ 0
LIMCH1-214ENST00000512228 C1QTNF8P60827 252 aa15.08■□□□□ 0
LIMCH1-214ENST00000512228 BCL2L12Q9HB09 334 aa15.08■□□□□ 0
LIMCH1-214ENST00000512228 CCDC87Q9NVE4 849 aa15.08■□□□□ 0
LIMCH1-214ENST00000512228 USP42Q9H9J4 1324 aaKnown RBP15.08■□□□□ 0
LIMCH1-214ENST00000512228 USPL1Q5W0Q7 1092 aa15.07■□□□□ 0
LIMCH1-214ENST00000512228 RSPH6AQ9H0K4 717 aa15.07■□□□□ 0
LIMCH1-214ENST00000512228 ZBTB1Q9Y2K1 713 aa15.07■□□□□ 0
LIMCH1-214ENST00000512228 SOS1Q07889 1333 aaPredicted RBP15.07■□□□□ 0
LIMCH1-214ENST00000512228 SIPA1L3O60292 1781 aaPredicted RBP15.06■□□□□ 0
LIMCH1-214ENST00000512228 UBR2Q8IWV8 1755 aa15.06■□□□□ 0
LIMCH1-214ENST00000512228 BRCA1P38398 1863 aaKnown RBP15.06■□□□□ 0
LIMCH1-214ENST00000512228 PRKAR2BP31323 418 aa15.06■□□□□ 0
LIMCH1-214ENST00000512228 TGFB2P61812 414 aa15.06■□□□□ 0
LIMCH1-214ENST00000512228 ZNF496Q96IT1 587 aaPredicted RBP15.06■□□□□ 0
LIMCH1-214ENST00000512228 C10orf71Q711Q0 1435 aa15.06■□□□□ 0
LIMCH1-214ENST00000512228 GNAT3A8MTJ3 354 aa15.05■□□□□ -0
LIMCH1-214ENST00000512228 PARP3Q9Y6F1 533 aa15.05■□□□□ -0
LIMCH1-214ENST00000512228 ATP10DQ9P241 1426 aa15.05■□□□□ -0
LIMCH1-214ENST00000512228 ADCY9O60503 1353 aa15.04■□□□□ -0
LIMCH1-214ENST00000512228 POLRMTO00411 1230 aaKnown RBP15.04■□□□□ -0
LIMCH1-214ENST00000512228 CHRNA5P30532 468 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms