RNA–Protein interactions for RNA: ENST00000510884.5

NUP54-210, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 441 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-210ENST00000510884 NFATC2IPQ8NCF5 419 aa11.54□□□□□ -0.56
NUP54-210ENST00000510884 WHAMMQ8TF30 809 aa11.54□□□□□ -0.56
NUP54-210ENST00000510884 MBIPQ9NS73 344 aa11.54□□□□□ -0.56
NUP54-210ENST00000510884 INHAP05111 366 aa11.53□□□□□ -0.56
NUP54-210ENST00000510884 UBTFP17480 764 aaKnown RBP11.53□□□□□ -0.56
NUP54-210ENST00000510884 TLR1Q15399 786 aa11.53□□□□□ -0.56
NUP54-210ENST00000510884 TMEM214Q6NUQ4 689 aaKnown RBP11.53□□□□□ -0.56
NUP54-210ENST00000510884 RHBDD1Q8TEB9 315 aa11.53□□□□□ -0.56
NUP54-210ENST00000510884 GTPBP3Q969Y2 492 aaKnown RBP11.53□□□□□ -0.56
NUP54-210ENST00000510884 NUCKS1Q9H1E3 243 aaKnown RBP11.53□□□□□ -0.56
NUP54-210ENST00000510884 GPR25O00155 361 aa11.52□□□□□ -0.57
NUP54-210ENST00000510884 GTF2E1P29083 439 aaPredicted RBP11.52□□□□□ -0.57
NUP54-210ENST00000510884 GDF10P55107 478 aa11.52□□□□□ -0.57
NUP54-210ENST00000510884 TMEM132AQ24JP5 1023 aa11.52□□□□□ -0.57
NUP54-210ENST00000510884 SVOPQ8N4V2 548 aa11.52□□□□□ -0.57
NUP54-210ENST00000510884 ARHGEF15O94989 841 aa11.51□□□□□ -0.57
NUP54-210ENST00000510884 THBS1P07996 1170 aa11.51□□□□□ -0.57
NUP54-210ENST00000510884 PHKA2P46019 1235 aa11.51□□□□□ -0.57
NUP54-210ENST00000510884 TRERF1Q96PN7 1200 aa11.5□□□□□ -0.57
NUP54-210ENST00000510884 ADAMTS8Q9UP79 889 aa11.5□□□□□ -0.57
NUP54-210ENST00000510884 LZTS3O60299 673 aaPredicted RBP11.49□□□□□ -0.57
NUP54-210ENST00000510884 LBRQ14739 615 aaKnown RBP11.49□□□□□ -0.57
NUP54-210ENST00000510884 GPAMQ9HCL2 828 aa11.49□□□□□ -0.57
NUP54-210ENST00000510884 PCDHGA11Q9Y5H2 935 aa11.49□□□□□ -0.57
NUP54-210ENST00000510884 TMEM229AB2RXF0 380 aa11.48□□□□□ -0.57
NUP54-210ENST00000510884 SKIP12755 728 aa11.48□□□□□ -0.57
NUP54-210ENST00000510884 ADAMTS19Q8TE59 1207 aa11.48□□□□□ -0.57
NUP54-210ENST00000510884 IGF1RP08069 1367 aa11.47□□□□□ -0.57
NUP54-210ENST00000510884 POM121CA8CG34 1229 aa11.47□□□□□ -0.57
NUP54-210ENST00000510884 GSK3AP49840 483 aa11.47□□□□□ -0.57
NUP54-210ENST00000510884 KCNMA1Q12791 1236 aa11.47□□□□□ -0.57
NUP54-210ENST00000510884 EML3Q32P44 896 aa11.47□□□□□ -0.57
NUP54-210ENST00000510884 LYPD4Q6UWN0 246 aa11.47□□□□□ -0.57
NUP54-210ENST00000510884 SLC4A9Q96Q91 983 aa11.47□□□□□ -0.57
NUP54-210ENST00000510884 MSX1P28360 303 aa11.46□□□□□ -0.57
NUP54-210ENST00000510884 SMTNP53814 917 aa11.46□□□□□ -0.57
NUP54-210ENST00000510884 UBAP2LQ14157 1087 aaKnown RBP11.46□□□□□ -0.57
NUP54-210ENST00000510884 ZNF295-AS1Q8N0V1 137 aa11.46□□□□□ -0.57
NUP54-210ENST00000510884 NOD1Q9Y239 953 aa11.46□□□□□ -0.57
NUP54-210ENST00000510884 CELA2BP08218 269 aaPredicted RBP11.45□□□□□ -0.58
NUP54-210ENST00000510884 NCOA4Q13772 614 aa11.45□□□□□ -0.58
NUP54-210ENST00000510884 MTFR1Q15390 333 aa11.45□□□□□ -0.58
NUP54-210ENST00000510884 CFHR5Q9BXR6 569 aa11.45□□□□□ -0.58
NUP54-210ENST00000510884 CRISPLD1Q9H336 500 aa11.45□□□□□ -0.58
NUP54-210ENST00000510884 USP17L5A8MUK1 530 aa11.44□□□□□ -0.58
NUP54-210ENST00000510884 RNF225M0QZC1 329 aaPredicted RBP11.44□□□□□ -0.58
NUP54-210ENST00000510884 IQSEC3Q9UPP2 1182 aaPredicted RBP11.44□□□□□ -0.58
NUP54-210ENST00000510884 CSB-PGBD3P0DP91 1061 aa11.43□□□□□ -0.58
NUP54-210ENST00000510884 MX2P20592 715 aa11.43□□□□□ -0.58
NUP54-210ENST00000510884 PLA2G4AP47712 749 aa11.43□□□□□ -0.58
NUP54-210ENST00000510884 GTF2IP78347 998 aa11.43□□□□□ -0.58
NUP54-210ENST00000510884 PGBD3Q8N328 593 aa11.43□□□□□ -0.58
NUP54-210ENST00000510884 RUBCNLQ9H714 662 aa11.43□□□□□ -0.58
NUP54-210ENST00000510884 MAP3K10Q02779 954 aa11.42□□□□□ -0.58
NUP54-210ENST00000510884 C1orf216Q8TAB5 229 aa11.42□□□□□ -0.58
NUP54-210ENST00000510884 UCN2Q96RP3 112 aa11.42□□□□□ -0.58
NUP54-210ENST00000510884 NIFKQ9BYG3 293 aaKnown RBP11.42□□□□□ -0.58
NUP54-210ENST00000510884 SERTAD1Q9UHV2 236 aa11.42□□□□□ -0.58
NUP54-210ENST00000510884 A6NJY4 79 aa11.41□□□□□ -0.58
NUP54-210ENST00000510884 ATP4AP20648 1035 aa11.41□□□□□ -0.58
NUP54-210ENST00000510884 TBC1D9Q6ZT07 1266 aa11.41□□□□□ -0.58
NUP54-210ENST00000510884 PLEKHM2Q8IWE5 1019 aa11.41□□□□□ -0.58
NUP54-210ENST00000510884 NSFL1CQ9UNZ2 370 aaKnown RBP11.41□□□□□ -0.58
NUP54-210ENST00000510884 PHF24Q9UPV7 400 aa11.41□□□□□ -0.58
NUP54-210ENST00000510884 CDK2AP1O14519 115 aa11.4□□□□□ -0.58
NUP54-210ENST00000510884 EFHC2Q5JST6 749 aa11.4□□□□□ -0.58
NUP54-210ENST00000510884 ACDQ96AP0 544 aa11.4□□□□□ -0.58
NUP54-210ENST00000510884 LRRC4BQ9NT99 713 aa11.4□□□□□ -0.58
NUP54-210ENST00000510884 NDFIP2Q9NV92 336 aa11.39□□□□□ -0.59
NUP54-210ENST00000510884 USP3Q9Y6I4 520 aa11.39□□□□□ -0.59
NUP54-210ENST00000510884 BCRP11274 1271 aa11.38□□□□□ -0.59
NUP54-210ENST00000510884 MAP2K3P46734 347 aa11.38□□□□□ -0.59
NUP54-210ENST00000510884 HDGFL1Q5TGJ6 251 aa11.38□□□□□ -0.59
NUP54-210ENST00000510884 DEPDC4Q8N2C3 294 aa11.38□□□□□ -0.59
NUP54-210ENST00000510884 FNBP4Q8N3X1 1017 aaPredicted RBP11.38□□□□□ -0.59
NUP54-210ENST00000510884 DNAAF2Q9NVR5 837 aaKnown RBP11.38□□□□□ -0.59
NUP54-210ENST00000510884 ZNF358Q9NW07 568 aa11.38□□□□□ -0.59
NUP54-210ENST00000510884 ATXN7L1Q9ULK2 861 aaPredicted RBP11.38□□□□□ -0.59
NUP54-210ENST00000510884 USP17L3A6NCW0 530 aa11.37□□□□□ -0.59
NUP54-210ENST00000510884 USP17L4A6NCW7 530 aa11.37□□□□□ -0.59
NUP54-210ENST00000510884 BACH1O14867 736 aa11.37□□□□□ -0.59
NUP54-210ENST00000510884 USP17L2Q6R6M4 530 aa11.37□□□□□ -0.59
NUP54-210ENST00000510884 USP17L1Q7RTZ2 530 aa11.37□□□□□ -0.59
NUP54-210ENST00000510884 CLUAP1Q96AJ1 413 aa11.37□□□□□ -0.59
NUP54-210ENST00000510884 ENAMQ9NRM1 1142 aa11.37□□□□□ -0.59
NUP54-210ENST00000510884 ZDHHC3Q9NYG2 299 aa11.37□□□□□ -0.59
NUP54-210ENST00000510884 ATP9BO43861 1147 aa11.36□□□□□ -0.59
NUP54-210ENST00000510884 EPHA4P54764 986 aa11.36□□□□□ -0.59
NUP54-210ENST00000510884 RASSF7Q02833 373 aa11.36□□□□□ -0.59
NUP54-210ENST00000510884 PSME1Q06323 249 aa11.36□□□□□ -0.59
NUP54-210ENST00000510884 PROSER2Q86WR7 435 aaPredicted RBP11.36□□□□□ -0.59
NUP54-210ENST00000510884 TRIM50Q86XT4 487 aa11.36□□□□□ -0.59
NUP54-210ENST00000510884 SCHIP1Q9P0W5 487 aaPredicted RBP11.36□□□□□ -0.59
NUP54-210ENST00000510884 MARSP56192 900 aaKnown RBP11.35□□□□□ -0.59
NUP54-210ENST00000510884 NBPF1Q3BBV0 1214 aa11.35□□□□□ -0.59
NUP54-210ENST00000510884 NLRP8Q86W28 1048 aa11.35□□□□□ -0.59
NUP54-210ENST00000510884 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.35□□□□□ -0.59
NUP54-210ENST00000510884 OXCT2Q9BYC2 517 aaPredicted RBP11.35□□□□□ -0.59
NUP54-210ENST00000510884 FOXK2Q01167 660 aa11.34□□□□□ -0.59
NUP54-210ENST00000510884 FIGNL1Q6PIW4 674 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 111.6 ms