RNA–Protein interactions for RNA: ENST00000510129.5

UBE2D3-229, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 3

Gene UBE2D3, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-229ENST00000510129 U2AF1L5P0DN76 240 aaPredicted RBP28.5■■■□□ 2.15
UBE2D3-229ENST00000510129 ATP6V1AP38606 617 aa28.5■■■□□ 2.15
UBE2D3-229ENST00000510129 U2AF1Q01081 240 aaKnown RBP eCLIP28.5■■■□□ 2.152e-12■□□□□ 11.1
UBE2D3-229ENST00000510129 NFATC2IPQ8NCF5 419 aa28.5■■■□□ 2.15
UBE2D3-229ENST00000510129 AK7Q96M32 723 aa28.5■■■□□ 2.15
UBE2D3-229ENST00000510129 FCHSD2O94868 740 aa28.49■■■□□ 2.15
UBE2D3-229ENST00000510129 ATF5Q9Y2D1 282 aaPredicted RBP28.49■■■□□ 2.15
UBE2D3-229ENST00000510129 SLC52A2Q9HAB3 445 aa28.48■■■□□ 2.15
UBE2D3-229ENST00000510129 TUBGCP6Q96RT7 1819 aa28.48■■■□□ 2.15
UBE2D3-229ENST00000510129 RNMTO43148 476 aaKnown RBP28.47■■■□□ 2.15
UBE2D3-229ENST00000510129 PTGER2P43116 358 aa28.47■■■□□ 2.15
UBE2D3-229ENST00000510129 RSPH6AQ9H0K4 717 aa28.47■■■□□ 2.15
UBE2D3-229ENST00000510129 MRC1P22897 1456 aa28.46■■■□□ 2.15
UBE2D3-229ENST00000510129 ADAMTS7Q9UKP4 1686 aa28.46■■■□□ 2.15
UBE2D3-229ENST00000510129 PRKAR2BP31323 418 aa28.46■■■□□ 2.15
UBE2D3-229ENST00000510129 MAP3K5Q99683 1374 aa28.46■■■□□ 2.15
UBE2D3-229ENST00000510129 GNAT3A8MTJ3 354 aa28.45■■■□□ 2.14
UBE2D3-229ENST00000510129 RBM42Q9BTD8 480 aaKnown RBP28.45■■■□□ 2.14
UBE2D3-229ENST00000510129 NEFMP07197 916 aa28.44■■■□□ 2.14
UBE2D3-229ENST00000510129 POLD1P28340 1107 aa28.44■■■□□ 2.14
UBE2D3-229ENST00000510129 SRCAPQ6ZRS2 3230 aa28.44■■■□□ 2.14
UBE2D3-229ENST00000510129 MSH5O43196 834 aa28.43■■■□□ 2.14
UBE2D3-229ENST00000510129 SGIP1Q9BQI5 828 aa28.43■■■□□ 2.14
UBE2D3-229ENST00000510129 PNNQ9H307 717 aaKnown RBP28.43■■■□□ 2.14
UBE2D3-229ENST00000510129 LGR6Q9HBX8 967 aa28.43■■■□□ 2.14
UBE2D3-229ENST00000510129 SSFA2P28290 1259 aa28.42■■■□□ 2.14
UBE2D3-229ENST00000510129 LINC00116Q8NCU8 138 aa28.42■■■□□ 2.14
UBE2D3-229ENST00000510129 VIRMAQ69YN4 1812 aaKnown RBP28.41■■■□□ 2.14
UBE2D3-229ENST00000510129 ITPK1Q13572 414 aa28.41■■■□□ 2.14
UBE2D3-229ENST00000510129 COL23A1Q86Y22 540 aaPredicted RBP28.41■■■□□ 2.14
UBE2D3-229ENST00000510129 COL24A1Q17RW2 1714 aa28.4■■■□□ 2.14
UBE2D3-229ENST00000510129 RC3H1Q5TC82 1133 aaKnown RBP28.39■■■□□ 2.14
UBE2D3-229ENST00000510129 ARXQ96QS3 562 aa28.39■■■□□ 2.14
UBE2D3-229ENST00000510129 UBR3Q6ZT12 1888 aa28.38■■■□□ 2.13
UBE2D3-229ENST00000510129 TEFQ10587 303 aa28.38■■■□□ 2.13
UBE2D3-229ENST00000510129 CICQ96RK0 1608 aaPredicted RBP28.38■■■□□ 2.13
UBE2D3-229ENST00000510129 MYBBP1AQ9BQG0 1328 aaKnown RBP28.38■■■□□ 2.13
UBE2D3-229ENST00000510129 CNTNAP4Q9C0A0 1308 aa28.38■■■□□ 2.13
UBE2D3-229ENST00000510129 DCAF8L1A6NGE4 600 aa28.37■■■□□ 2.13
UBE2D3-229ENST00000510129 GNPATO15228 680 aa28.37■■■□□ 2.13
UBE2D3-229ENST00000510129 PTCD1O75127 700 aaKnown RBP28.37■■■□□ 2.13
UBE2D3-229ENST00000510129 PHACTR3Q96KR7 559 aa28.37■■■□□ 2.13
UBE2D3-229ENST00000510129 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.36■■■□□ 2.13
UBE2D3-229ENST00000510129 COL5A3P25940 1745 aaPredicted RBP28.35■■■□□ 2.13
UBE2D3-229ENST00000510129 ADRA2BP18089 450 aa28.35■■■□□ 2.13
UBE2D3-229ENST00000510129 RTF1Q92541 710 aaKnown RBP28.35■■■□□ 2.13
UBE2D3-229ENST00000510129 SLC4A9Q96Q91 983 aa28.35■■■□□ 2.13
UBE2D3-229ENST00000510129 RTCBQ9Y3I0 505 aaKnown RBP28.35■■■□□ 2.13
UBE2D3-229ENST00000510129 HTATSF1O43719 755 aaKnown RBP28.34■■■□□ 2.13
UBE2D3-229ENST00000510129 TTC5Q8N0Z6 440 aa28.33■■■□□ 2.13
UBE2D3-229ENST00000510129 IL17REQ8NFR9 667 aa28.33■■■□□ 2.13
UBE2D3-229ENST00000510129 CEMIPQ8WUJ3 1361 aa28.33■■■□□ 2.13
UBE2D3-229ENST00000510129 PHF14O94880 888 aa28.32■■■□□ 2.12
UBE2D3-229ENST00000510129 VSIG10Q8N0Z9 540 aa28.32■■■□□ 2.12
UBE2D3-229ENST00000510129 TRAPPC3LQ5T215 181 aa28.31■■■□□ 2.12
UBE2D3-229ENST00000510129 FHDC1Q9C0D6 1143 aaPredicted RBP28.3■■■□□ 2.12
UBE2D3-229ENST00000510129 RPS6KA4O75676 772 aa28.29■■■□□ 2.12
UBE2D3-229ENST00000510129 SYT17Q9BSW7 474 aa28.29■■■□□ 2.12
UBE2D3-229ENST00000510129 MAPK8IP3Q9UPT6 1336 aa28.28■■■□□ 2.12
UBE2D3-229ENST00000510129 TJP1Q07157 1748 aa28.28■■■□□ 2.12
UBE2D3-229ENST00000510129 SIPA1L3O60292 1781 aaPredicted RBP28.27■■■□□ 2.12
UBE2D3-229ENST00000510129 SLC39A6Q13433 755 aa28.27■■■□□ 2.12
UBE2D3-229ENST00000510129 KCPQ6ZWJ8 1503 aa28.27■■■□□ 2.12
UBE2D3-229ENST00000510129 UBR2Q8IWV8 1755 aa28.27■■■□□ 2.12
UBE2D3-229ENST00000510129 CRKLP46109 303 aaKnown RBP28.26■■■□□ 2.11
UBE2D3-229ENST00000510129 ZNF790Q6PG37 636 aa28.26■■■□□ 2.11
UBE2D3-229ENST00000510129 PRKRIP1Q9H875 184 aaPredicted RBP28.26■■■□□ 2.11
UBE2D3-229ENST00000510129 AMIGO3Q86WK7 504 aa28.25■■■□□ 2.11
UBE2D3-229ENST00000510129 PLEKHF1Q96S99 279 aa28.25■■■□□ 2.11
UBE2D3-229ENST00000510129 TEX13AQ9BXU3 409 aaPredicted RBP28.25■■■□□ 2.11
UBE2D3-229ENST00000510129 ZNF316A6NFI3 1004 aaPredicted RBP28.23■■■□□ 2.11
UBE2D3-229ENST00000510129 RFC4P35249 363 aa28.23■■■□□ 2.11
UBE2D3-229ENST00000510129 MSL1Q68DK7 614 aa28.23■■■□□ 2.11
UBE2D3-229ENST00000510129 BTBD11A6QL63 1104 aa28.22■■■□□ 2.11
UBE2D3-229ENST00000510129 DNAJC10Q8IXB1 793 aa28.22■■■□□ 2.11
UBE2D3-229ENST00000510129 NLGN1Q8N2Q7 840 aa28.22■■■□□ 2.11
UBE2D3-229ENST00000510129 CCDC87Q9NVE4 849 aa28.22■■■□□ 2.11
UBE2D3-229ENST00000510129 STARD3NLO95772 234 aa28.21■■■□□ 2.11
UBE2D3-229ENST00000510129 FMNL2Q96PY5 1086 aa28.21■■■□□ 2.11
UBE2D3-229ENST00000510129 NFE2L2Q16236 605 aa28.2■■■□□ 2.1
UBE2D3-229ENST00000510129 ARHGEF1Q92888 912 aaKnown RBP28.2■■■□□ 2.1
UBE2D3-229ENST00000510129 MYH14Q7Z406 1995 aaKnown RBP28.19■■■□□ 2.1
UBE2D3-229ENST00000510129 CYP19A1P11511 503 aaPredicted RBP28.19■■■□□ 2.1
UBE2D3-229ENST00000510129 WDR43Q15061 677 aaKnown RBP eCLIP28.19■■■□□ 2.1
UBE2D3-229ENST00000510129 MCM10Q7L590 875 aa28.19■■■□□ 2.1
UBE2D3-229ENST00000510129 HEG1Q9ULI3 1381 aa28.19■■■□□ 2.1
UBE2D3-229ENST00000510129 INTS5Q6P9B9 1019 aaKnown RBP28.18■■■□□ 2.1
UBE2D3-229ENST00000510129 KLHL34Q8N239 644 aa28.18■■■□□ 2.1
UBE2D3-229ENST00000510129 ZNF496Q96IT1 587 aaPredicted RBP28.18■■■□□ 2.1
UBE2D3-229ENST00000510129 CD2APQ9Y5K6 639 aa28.18■■■□□ 2.1
UBE2D3-229ENST00000510129 SMIM5Q71RC9 77 aa28.17■■■□□ 2.1
UBE2D3-229ENST00000510129 PNISRQ8TF01 805 aaKnown RBP28.17■■■□□ 2.1
UBE2D3-229ENST00000510129 TAF7Q15545 349 aaPredicted RBP28.16■■■□□ 2.1
UBE2D3-229ENST00000510129 DLG5Q8TDM6 1919 aa28.14■■■□□ 2.1
UBE2D3-229ENST00000510129 LMOD3Q0VAK6 560 aa28.14■■■□□ 2.1
UBE2D3-229ENST00000510129 C4AP0C0L4 1744 aa28.14■■■□□ 2.1
UBE2D3-229ENST00000510129 SOS1Q07889 1333 aaPredicted RBP28.14■■■□□ 2.09
UBE2D3-229ENST00000510129 DCTN1Q14203 1278 aa28.12■■■□□ 2.09
UBE2D3-229ENST00000510129 USP42Q9H9J4 1324 aaKnown RBP28.12■■■□□ 2.09
UBE2D3-229ENST00000510129 ZPR1O75312 459 aa28.11■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms