RNA–Protein interactions for RNA: ENST00000509330.5

PHF3-209, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best) BASIC

Gene PHF3, Length 2,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-209ENST00000509330 CEMIPQ8WUJ3 1361 aa18.66■□□□□ 0.58
PHF3-209ENST00000509330 SPATA31A3Q5VYP0 1347 aa18.66■□□□□ 0.58
PHF3-209ENST00000509330 MFAP1P55081 439 aaKnown RBP18.66■□□□□ 0.58
PHF3-209ENST00000509330 AMOTQ4VCS5 1084 aa18.66■□□□□ 0.58
PHF3-209ENST00000509330 CHPF2Q9P2E5 772 aa18.66■□□□□ 0.58
PHF3-209ENST00000509330 SLC39A6Q13433 755 aa18.66■□□□□ 0.58
PHF3-209ENST00000509330 SMARCA5O60264 1052 aaPredicted RBP18.65■□□□□ 0.58
PHF3-209ENST00000509330 TNS3Q68CZ2 1445 aa18.65■□□□□ 0.58
PHF3-209ENST00000509330 C16orf71Q8IYS4 520 aaPredicted RBP18.65■□□□□ 0.58
PHF3-209ENST00000509330 CEP85Q6P2H3 762 aa18.64■□□□□ 0.57
PHF3-209ENST00000509330 DCCP43146 1447 aa18.64■□□□□ 0.57
PHF3-209ENST00000509330 LRRC37A3O60309 1634 aa18.64■□□□□ 0.57
PHF3-209ENST00000509330 PRDM11Q9NQV5 511 aa18.63■□□□□ 0.57
PHF3-209ENST00000509330 DAXXQ9UER7 740 aaPredicted RBP18.63■□□□□ 0.57
PHF3-209ENST00000509330 GCC1Q96CN9 775 aa18.63■□□□□ 0.57
PHF3-209ENST00000509330 ALS2Q96Q42 1657 aa18.63■□□□□ 0.57
PHF3-209ENST00000509330 TATP17735 454 aaPredicted RBP18.62■□□□□ 0.57
PHF3-209ENST00000509330 OTUD7AQ8TE49 926 aaPredicted RBP18.62■□□□□ 0.57
PHF3-209ENST00000509330 STRCQ7RTU9 1775 aa18.62■□□□□ 0.57
PHF3-209ENST00000509330 STRN4Q9NRL3 753 aa18.61■□□□□ 0.57
PHF3-209ENST00000509330 USP35Q9P2H5 1018 aa18.61■□□□□ 0.57
PHF3-209ENST00000509330 ANKRD44Q8N8A2 993 aa18.61■□□□□ 0.57
PHF3-209ENST00000509330 DDRGK1Q96HY6 314 aa18.61■□□□□ 0.57
PHF3-209ENST00000509330 ATP10DQ9P241 1426 aa18.61■□□□□ 0.57
PHF3-209ENST00000509330 CCT4P50991 539 aaKnown RBP18.6■□□□□ 0.57
PHF3-209ENST00000509330 PROSER3Q2NL68 480 aa18.6■□□□□ 0.57
PHF3-209ENST00000509330 NFATC2IPQ8NCF5 419 aa18.6■□□□□ 0.57
PHF3-209ENST00000509330 MEGF6O75095 1541 aa18.6■□□□□ 0.57
PHF3-209ENST00000509330 UPF2Q9HAU5 1272 aaKnown RBP18.6■□□□□ 0.57
PHF3-209ENST00000509330 PIP4K2AP48426 406 aaPredicted RBP18.59■□□□□ 0.57
PHF3-209ENST00000509330 EXOC6BQ9Y2D4 811 aa18.59■□□□□ 0.57
PHF3-209ENST00000509330 TOM1L2Q6ZVM7 507 aa18.59■□□□□ 0.57
PHF3-209ENST00000509330 XIRP1Q702N8 1843 aaKnown RBP18.58■□□□□ 0.57
PHF3-209ENST00000509330 AIMP1Q12904 312 aaKnown RBP18.58■□□□□ 0.57
PHF3-209ENST00000509330 PI4KAP2A4QPH2 592 aa18.58■□□□□ 0.56
PHF3-209ENST00000509330 PI4KAP1Q8N8J0 262 aa18.58■□□□□ 0.56
PHF3-209ENST00000509330 DCTPP1Q9H773 170 aa18.58■□□□□ 0.56
PHF3-209ENST00000509330 PHRF1Q9P1Y6 1649 aaKnown RBP18.58■□□□□ 0.56
PHF3-209ENST00000509330 NCOA3Q9Y6Q9 1424 aa18.57■□□□□ 0.56
PHF3-209ENST00000509330 LRRFIP2Q9Y608 721 aaKnown RBP18.57■□□□□ 0.56
PHF3-209ENST00000509330 PHKG2P15735 406 aa18.57■□□□□ 0.56
PHF3-209ENST00000509330 RPAP2Q8IXW5 612 aaPredicted RBP18.57■□□□□ 0.56
PHF3-209ENST00000509330 BABAM1Q9NWV8 329 aa18.57■□□□□ 0.56
PHF3-209ENST00000509330 PNMA6EA0A0J9YXQ4 647 aa18.56■□□□□ 0.56
PHF3-209ENST00000509330 GNAI2P04899 355 aa18.56■□□□□ 0.56
PHF3-209ENST00000509330 CYP27B1O15528 508 aa18.56■□□□□ 0.56
PHF3-209ENST00000509330 TSHZ3Q63HK5 1081 aa18.55■□□□□ 0.56
PHF3-209ENST00000509330 SPG7Q9UQ90 795 aa18.55■□□□□ 0.56
PHF3-209ENST00000509330 FAM208AQ9UK61 1670 aaKnown RBP18.55■□□□□ 0.56
PHF3-209ENST00000509330 GIGYF1O75420 1035 aaPredicted RBP18.55■□□□□ 0.56
PHF3-209ENST00000509330 MYL6BP14649 208 aa18.54■□□□□ 0.56
PHF3-209ENST00000509330 NCAPD2Q15021 1401 aa18.54■□□□□ 0.56
PHF3-209ENST00000509330 USP44Q9H0E7 712 aa18.54■□□□□ 0.56
PHF3-209ENST00000509330 SPRYD3Q8NCJ5 442 aa18.53■□□□□ 0.56
PHF3-209ENST00000509330 UBTFL1P0CB47 393 aaPredicted RBP18.53■□□□□ 0.56
PHF3-209ENST00000509330 PLEKHM2Q8IWE5 1019 aa18.53■□□□□ 0.56
PHF3-209ENST00000509330 IFNL2Q8IZJ0 200 aa18.53■□□□□ 0.56
PHF3-209ENST00000509330 KDM6AO15550 1401 aaPredicted RBP18.52■□□□□ 0.56
PHF3-209ENST00000509330 NBPF7P0C2Y1 421 aaPredicted RBP18.52■□□□□ 0.56
PHF3-209ENST00000509330 GSPT1P15170 499 aaKnown RBP18.52■□□□□ 0.56
PHF3-209ENST00000509330 DDX54Q8TDD1 881 aaKnown RBP18.52■□□□□ 0.56
PHF3-209ENST00000509330 TBC1D32Q96NH3 1257 aa18.52■□□□□ 0.56
PHF3-209ENST00000509330 SRCIN1Q9C0H9 1055 aa18.52■□□□□ 0.56
PHF3-209ENST00000509330 SLC52A2Q9HAB3 445 aa18.52■□□□□ 0.56
PHF3-209ENST00000509330 LMO7Q8WWI1 1683 aa18.52■□□□□ 0.56
PHF3-209ENST00000509330 ZNF790Q6PG37 636 aa18.52■□□□□ 0.56
PHF3-209ENST00000509330 SOS2Q07890 1332 aaPredicted RBP18.52■□□□□ 0.55
PHF3-209ENST00000509330 DNAAF4Q8WXU2 420 aa18.51■□□□□ 0.55
PHF3-209ENST00000509330 C22orf23Q9BZE7 217 aa18.51■□□□□ 0.55
PHF3-209ENST00000509330 VIRMAQ69YN4 1812 aaKnown RBP18.51■□□□□ 0.55
PHF3-209ENST00000509330 HMMRO75330 724 aa18.51■□□□□ 0.55
PHF3-209ENST00000509330 GNAI3P08754 354 aa18.51■□□□□ 0.55
PHF3-209ENST00000509330 EVA1CP58658 441 aa18.51■□□□□ 0.55
PHF3-209ENST00000509330 LARP1Q6PKG0 1096 aaKnown RBP18.51■□□□□ 0.55
PHF3-209ENST00000509330 ZNF496Q96IT1 587 aaPredicted RBP18.51■□□□□ 0.55
PHF3-209ENST00000509330 DBF4Q9UBU7 674 aaPredicted RBP18.51■□□□□ 0.55
PHF3-209ENST00000509330 MAP3K2Q9Y2U5 619 aa18.51■□□□□ 0.55
PHF3-209ENST00000509330 CWF19L2Q2TBE0 894 aaKnown RBP18.5■□□□□ 0.55
PHF3-209ENST00000509330 BMP2KLQ5H9B9 411 aa18.5■□□□□ 0.55
PHF3-209ENST00000509330 SLKQ9H2G2 1235 aaPredicted RBP18.49■□□□□ 0.55
PHF3-209ENST00000509330 TBC1D9Q6ZT07 1266 aa18.48■□□□□ 0.55
PHF3-209ENST00000509330 TTC5Q8N0Z6 440 aa18.48■□□□□ 0.55
PHF3-209ENST00000509330 CABP4P57796 275 aa18.48■□□□□ 0.55
PHF3-209ENST00000509330 CAMTA1Q9Y6Y1 1673 aa18.48■□□□□ 0.55
PHF3-209ENST00000509330 COL18A1P39060 1754 aa18.48■□□□□ 0.55
PHF3-209ENST00000509330 KDM3BQ7LBC6 1761 aa18.48■□□□□ 0.55
PHF3-209ENST00000509330 BEND3Q5T5X7 828 aa18.48■□□□□ 0.55
PHF3-209ENST00000509330 IL1RAPL2Q9NP60 686 aa18.48■□□□□ 0.55
PHF3-209ENST00000509330 USP16Q9Y5T5 823 aa18.48■□□□□ 0.55
PHF3-209ENST00000509330 ADCY9O60503 1353 aa18.48■□□□□ 0.55
PHF3-209ENST00000509330 HOXB7P09629 217 aa18.47■□□□□ 0.55
PHF3-209ENST00000509330 SOS1Q07889 1333 aaPredicted RBP18.47■□□□□ 0.55
PHF3-209ENST00000509330 WDR17Q8IZU2 1322 aa18.47■□□□□ 0.55
PHF3-209ENST00000509330 CPDO75976 1380 aa18.46■□□□□ 0.55
PHF3-209ENST00000509330 PPP1R42Q7Z4L9 355 aa18.46■□□□□ 0.55
PHF3-209ENST00000509330 DCAF5Q96JK2 942 aa18.45■□□□□ 0.54
PHF3-209ENST00000509330 SRGAP3O43295 1099 aa18.45■□□□□ 0.54
PHF3-209ENST00000509330 ATP8B2P98198 1209 aa18.45■□□□□ 0.54
PHF3-209ENST00000509330 JARID2Q92833 1246 aaPredicted RBP18.45■□□□□ 0.54
PHF3-209ENST00000509330 TTC22Q5TAA0 569 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms