RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 IL17REQ8NFR9 667 aa24.13■■□□□ 1.45
NPHP4-210ENST00000506941 ANO8Q9HCE9 1232 aaPredicted RBP24.13■■□□□ 1.45
NPHP4-210ENST00000506941 ATG3Q9NT62 314 aa24.13■■□□□ 1.45
NPHP4-210ENST00000506941 PNNQ9H307 717 aaKnown RBP24.12■■□□□ 1.45
NPHP4-210ENST00000506941 SLC52A2Q9HAB3 445 aa24.12■■□□□ 1.45
NPHP4-210ENST00000506941 CEMIPQ8WUJ3 1361 aa24.12■■□□□ 1.45
NPHP4-210ENST00000506941 TJP1Q07157 1748 aa24.12■■□□□ 1.45
NPHP4-210ENST00000506941 MAPK8IP3Q9UPT6 1336 aa24.11■■□□□ 1.45
NPHP4-210ENST00000506941 CICQ96RK0 1608 aaPredicted RBP24.11■■□□□ 1.45
NPHP4-210ENST00000506941 CCDC146Q8IYE0 955 aa24.11■■□□□ 1.45
NPHP4-210ENST00000506941 SMARCC1Q92922 1105 aaPredicted RBP24.11■■□□□ 1.45
NPHP4-210ENST00000506941 C4BP0C0L5 1744 aa24.1■■□□□ 1.45
NPHP4-210ENST00000506941 NEFMP07197 916 aa24.1■■□□□ 1.45
NPHP4-210ENST00000506941 NFE2L2Q16236 605 aa24.1■■□□□ 1.45
NPHP4-210ENST00000506941 SLC27A3Q5K4L6 730 aa24.1■■□□□ 1.45
NPHP4-210ENST00000506941 CASZ1Q86V15 1759 aa24.1■■□□□ 1.45
NPHP4-210ENST00000506941 MRS2Q9HD23 443 aa24.09■■□□□ 1.45
NPHP4-210ENST00000506941 CCNL1Q9UK58 526 aaPredicted RBP24.09■■□□□ 1.45
NPHP4-210ENST00000506941 PSDA5PKW4 1024 aaPredicted RBP24.08■■□□□ 1.45
NPHP4-210ENST00000506941 R3HDM1Q15032 1099 aaKnown RBP24.08■■□□□ 1.45
NPHP4-210ENST00000506941 UBR3Q6ZT12 1888 aa24.08■■□□□ 1.45
NPHP4-210ENST00000506941 KCPQ6ZWJ8 1503 aa24.08■■□□□ 1.45
NPHP4-210ENST00000506941 MCM10Q7L590 875 aa24.07■■□□□ 1.44
NPHP4-210ENST00000506941 KDM3BQ7LBC6 1761 aa24.06■■□□□ 1.44
NPHP4-210ENST00000506941 MYH14Q7Z406 1995 aaKnown RBP24.06■■□□□ 1.44
NPHP4-210ENST00000506941 DCTN1Q14203 1278 aa24.06■■□□□ 1.44
NPHP4-210ENST00000506941 NBPF14Q5TI25 921 aa24.06■■□□□ 1.44
NPHP4-210ENST00000506941 PNISRQ8TF01 805 aaKnown RBP24.06■■□□□ 1.44
NPHP4-210ENST00000506941 RUNDC1Q96C34 613 aa24.06■■□□□ 1.44
NPHP4-210ENST00000506941 LOC102724428A0A0B4J2F2 783 aa24.05■■□□□ 1.44
NPHP4-210ENST00000506941 HTATSF1O43719 755 aaKnown RBP24.05■■□□□ 1.44
NPHP4-210ENST00000506941 SIK1P57059 783 aa24.05■■□□□ 1.44
NPHP4-210ENST00000506941 ZNF827Q17R98 1081 aa24.05■■□□□ 1.44
NPHP4-210ENST00000506941 RTF1Q92541 710 aaKnown RBP24.04■■□□□ 1.44
NPHP4-210ENST00000506941 SLC4A9Q96Q91 983 aa24.04■■□□□ 1.44
NPHP4-210ENST00000506941 TMPOP42166 694 aaKnown RBP24.03■■□□□ 1.44
NPHP4-210ENST00000506941 TEFQ10587 303 aa24.03■■□□□ 1.44
NPHP4-210ENST00000506941 SLC39A6Q13433 755 aa24.03■■□□□ 1.44
NPHP4-210ENST00000506941 ITPK1Q13572 414 aa24.02■■□□□ 1.44
NPHP4-210ENST00000506941 SLC15A2Q16348 729 aa24.02■■□□□ 1.44
NPHP4-210ENST00000506941 AKT1S1Q96B36 256 aa24.02■■□□□ 1.44
NPHP4-210ENST00000506941 RRP7AQ9Y3A4 280 aaKnown RBP24.02■■□□□ 1.44
NPHP4-210ENST00000506941 RBM42Q9BTD8 480 aaKnown RBP24.01■■□□□ 1.43
NPHP4-210ENST00000506941 STK32BQ9NY57 414 aa24.01■■□□□ 1.43
NPHP4-210ENST00000506941 SRCAPQ6ZRS2 3230 aa24.01■■□□□ 1.43
NPHP4-210ENST00000506941 PTCD1O75127 700 aaKnown RBP24■■□□□ 1.43
NPHP4-210ENST00000506941 RIPK4P57078 832 aa24■■□□□ 1.43
NPHP4-210ENST00000506941 THUMPD2Q9BTF0 503 aaKnown RBP24■■□□□ 1.43
NPHP4-210ENST00000506941 ATP6V1AP38606 617 aa23.99■■□□□ 1.43
NPHP4-210ENST00000506941 LINC00116Q8NCU8 138 aa23.99■■□□□ 1.43
NPHP4-210ENST00000506941 DIEXFQ68CQ4 756 aaKnown RBP23.98■■□□□ 1.43
NPHP4-210ENST00000506941 NEUROD2Q15784 382 aa23.97■■□□□ 1.43
NPHP4-210ENST00000506941 PDGFDQ9GZP0 370 aaPredicted RBP23.97■■□□□ 1.43
NPHP4-210ENST00000506941 BTBD11A6QL63 1104 aa23.95■■□□□ 1.42
NPHP4-210ENST00000506941 APAF1O14727 1248 aa23.95■■□□□ 1.42
NPHP4-210ENST00000506941 KCNQ3O43525 872 aa23.95■■□□□ 1.42
NPHP4-210ENST00000506941 ZNF790Q6PG37 636 aa23.95■■□□□ 1.42
NPHP4-210ENST00000506941 TRIM35Q9UPQ4 493 aa23.95■■□□□ 1.42
NPHP4-210ENST00000506941 LRP5O75197 1615 aa23.95■■□□□ 1.42
NPHP4-210ENST00000506941 LAMB4A4D0S4 1761 aa23.94■■□□□ 1.42
NPHP4-210ENST00000506941 C4AP0C0L4 1744 aa23.94■■□□□ 1.42
NPHP4-210ENST00000506941 COL24A1Q17RW2 1714 aa23.93■■□□□ 1.42
NPHP4-210ENST00000506941 PNPLA7Q6ZV29 1317 aa23.93■■□□□ 1.42
NPHP4-210ENST00000506941 TAF7Q15545 349 aaPredicted RBP23.93■■□□□ 1.42
NPHP4-210ENST00000506941 TTC5Q8N0Z6 440 aa23.93■■□□□ 1.42
NPHP4-210ENST00000506941 LMOD3Q0VAK6 560 aa23.92■■□□□ 1.42
NPHP4-210ENST00000506941 AMIGO3Q86WK7 504 aa23.92■■□□□ 1.42
NPHP4-210ENST00000506941 ZNF496Q96IT1 587 aaPredicted RBP23.92■■□□□ 1.42
NPHP4-210ENST00000506941 TFCP2L1Q9NZI6 479 aa23.92■■□□□ 1.42
NPHP4-210ENST00000506941 MIS18AQ9NYP9 233 aa23.91■■□□□ 1.42
NPHP4-210ENST00000506941 DNAJC10Q8IXB1 793 aa23.9■■□□□ 1.42
NPHP4-210ENST00000506941 FAM9BQ8IZU0 186 aa23.9■■□□□ 1.42
NPHP4-210ENST00000506941 HEG1Q9ULI3 1381 aa23.9■■□□□ 1.42
NPHP4-210ENST00000506941 SENP3-EIF4A1A0A087X0R7 540 aa23.89■■□□□ 1.41
NPHP4-210ENST00000506941 AK7Q96M32 723 aa23.89■■□□□ 1.41
NPHP4-210ENST00000506941 CNTNAP4Q9C0A0 1308 aa23.88■■□□□ 1.41
NPHP4-210ENST00000506941 CCER2I3L3R5 266 aa23.88■■□□□ 1.41
NPHP4-210ENST00000506941 HMGB2P26583 209 aaKnown RBP23.88■■□□□ 1.41
NPHP4-210ENST00000506941 SMIM5Q71RC9 77 aa23.88■■□□□ 1.41
NPHP4-210ENST00000506941 VSIG10Q8N0Z9 540 aa23.88■■□□□ 1.41
NPHP4-210ENST00000506941 MIER1Q8N108 512 aa23.87■■□□□ 1.41
NPHP4-210ENST00000506941 FMNL2Q96PY5 1086 aa23.87■■□□□ 1.41
NPHP4-210ENST00000506941 GNPATO15228 680 aa23.86■■□□□ 1.41
NPHP4-210ENST00000506941 CRKLP46109 303 aaKnown RBP23.86■■□□□ 1.41
NPHP4-210ENST00000506941 RC3H1Q5TC82 1133 aaKnown RBP23.86■■□□□ 1.41
NPHP4-210ENST00000506941 CYP19A1P11511 503 aaPredicted RBP23.85■■□□□ 1.41
NPHP4-210ENST00000506941 COL23A1Q86Y22 540 aaPredicted RBP23.85■■□□□ 1.41
NPHP4-210ENST00000506941 PHF14O94880 888 aa23.83■■□□□ 1.41
NPHP4-210ENST00000506941 ZBTB7AO95365 584 aa23.83■■□□□ 1.41
NPHP4-210ENST00000506941 INTS5Q6P9B9 1019 aaKnown RBP23.83■■□□□ 1.41
NPHP4-210ENST00000506941 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.82■■□□□ 1.4
NPHP4-210ENST00000506941 PRAMEF22A3QJZ6 481 aa23.82■■□□□ 1.4
NPHP4-210ENST00000506941 SSFA2P28290 1259 aa23.82■■□□□ 1.4
NPHP4-210ENST00000506941 CCDC87Q9NVE4 849 aa23.81■■□□□ 1.4
NPHP4-210ENST00000506941 TSPYL4Q9UJ04 414 aa23.81■■□□□ 1.4
NPHP4-210ENST00000506941 RPS6KA4O75676 772 aa23.8■■□□□ 1.4
NPHP4-210ENST00000506941 EIF4A1P60842 406 aaKnown RBP23.8■■□□□ 1.4
NPHP4-210ENST00000506941 CHL1O00533 1208 aa23.79■■□□□ 1.4
NPHP4-210ENST00000506941 FLAD1Q8NFF5 587 aa23.79■■□□□ 1.4
NPHP4-210ENST00000506941 MTFR1LQ9H019 292 aa23.79■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms