RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 MPRIPQ6WCQ1 1025 aa17.62■□□□□ 0.41
TCOF1-209ENST00000506630 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.62■□□□□ 0.41
TCOF1-209ENST00000506630 PALLDQ8WX93 1383 aa17.62■□□□□ 0.41
TCOF1-209ENST00000506630 SCN11AQ9UI33 1791 aa17.61■□□□□ 0.41
TCOF1-209ENST00000506630 U2SURPO15042 1029 aaKnown RBP17.61■□□□□ 0.41
TCOF1-209ENST00000506630 HMOX1P09601 288 aa17.61■□□□□ 0.41
TCOF1-209ENST00000506630 SMIM5Q71RC9 77 aa17.61■□□□□ 0.41
TCOF1-209ENST00000506630 SMARCC1Q92922 1105 aaPredicted RBP17.61■□□□□ 0.41
TCOF1-209ENST00000506630 AK7Q96M32 723 aa17.61■□□□□ 0.41
TCOF1-209ENST00000506630 HSPA6P17066 643 aa17.6■□□□□ 0.41
TCOF1-209ENST00000506630 PLEKHO1Q53GL0 409 aaPredicted RBP17.6■□□□□ 0.41
TCOF1-209ENST00000506630 IFNL2Q8IZJ0 200 aa17.6■□□□□ 0.41
TCOF1-209ENST00000506630 ZNF526Q8TF50 670 aaPredicted RBP17.6■□□□□ 0.41
TCOF1-209ENST00000506630 PHKG2P15735 406 aa17.59■□□□□ 0.41
TCOF1-209ENST00000506630 AMIGO3Q86WK7 504 aa17.59■□□□□ 0.41
TCOF1-209ENST00000506630 TAF1LQ8IZX4 1826 aa17.58■□□□□ 0.41
TCOF1-209ENST00000506630 ZNF316A6NFI3 1004 aaPredicted RBP17.58■□□□□ 0.4
TCOF1-209ENST00000506630 NKX1-1Q15270 411 aaPredicted RBP17.58■□□□□ 0.4
TCOF1-209ENST00000506630 AMOTQ4VCS5 1084 aa17.58■□□□□ 0.4
TCOF1-209ENST00000506630 ZNF530Q6P9A1 599 aaPredicted RBP17.58■□□□□ 0.4
TCOF1-209ENST00000506630 PIGBQ92521 554 aa17.58■□□□□ 0.4
TCOF1-209ENST00000506630 RALBP1Q15311 655 aa17.57■□□□□ 0.4
TCOF1-209ENST00000506630 ADCY9O60503 1353 aa17.56■□□□□ 0.4
TCOF1-209ENST00000506630 C5P01031 1676 aa17.56■□□□□ 0.4
TCOF1-209ENST00000506630 PHF14O94880 888 aa17.56■□□□□ 0.4
TCOF1-209ENST00000506630 C1orf141Q5JVX7 400 aa17.56■□□□□ 0.4
TCOF1-209ENST00000506630 NUDCQ9Y266 331 aa17.56■□□□□ 0.4
TCOF1-209ENST00000506630 GOLGB1Q14789 3259 aaKnown RBP17.56■□□□□ 0.4
TCOF1-209ENST00000506630 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.55■□□□□ 0.4
TCOF1-209ENST00000506630 HSP90AB1P08238 724 aaKnown RBP17.54■□□□□ 0.4
TCOF1-209ENST00000506630 WWC3Q9ULE0 1092 aa17.54■□□□□ 0.4
TCOF1-209ENST00000506630 ASAP1Q9ULH1 1129 aa17.54■□□□□ 0.4
TCOF1-209ENST00000506630 KDM6AO15550 1401 aaPredicted RBP17.54■□□□□ 0.4
TCOF1-209ENST00000506630 SSFA2P28290 1259 aa17.53■□□□□ 0.4
TCOF1-209ENST00000506630 DLG5Q8TDM6 1919 aa17.53■□□□□ 0.4
TCOF1-209ENST00000506630 MYBBP1AQ9BQG0 1328 aaKnown RBP17.52■□□□□ 0.4
TCOF1-209ENST00000506630 U2AF1L5P0DN76 240 aaPredicted RBP17.52■□□□□ 0.4
TCOF1-209ENST00000506630 U2AF1Q01081 240 aaKnown RBP eCLIP17.52■□□□□ 0.4
TCOF1-209ENST00000506630 TMOD3Q9NYL9 352 aa17.52■□□□□ 0.4
TCOF1-209ENST00000506630 DCAF5Q96JK2 942 aa17.51■□□□□ 0.39
TCOF1-209ENST00000506630 C4BP0C0L5 1744 aa17.5■□□□□ 0.39
TCOF1-209ENST00000506630 LOC102724428A0A0B4J2F2 783 aa17.5■□□□□ 0.39
TCOF1-209ENST00000506630 SIK1P57059 783 aa17.5■□□□□ 0.39
TCOF1-209ENST00000506630 ITPK1Q13572 414 aa17.5■□□□□ 0.39
TCOF1-209ENST00000506630 MTHFSDQ2M296 383 aaKnown RBP17.5■□□□□ 0.39
TCOF1-209ENST00000506630 AKAP4Q5JQC9 854 aa17.5■□□□□ 0.39
TCOF1-209ENST00000506630 SLC4A9Q96Q91 983 aa17.5■□□□□ 0.39
TCOF1-209ENST00000506630 ADAMTS7Q9UKP4 1686 aa17.5■□□□□ 0.39
TCOF1-209ENST00000506630 CEP350Q5VT06 3117 aa17.5■□□□□ 0.39
TCOF1-209ENST00000506630 PRKAR2BP31323 418 aa17.49■□□□□ 0.39
TCOF1-209ENST00000506630 LINC00116Q8NCU8 138 aa17.49■□□□□ 0.39
TCOF1-209ENST00000506630 RSPH6AQ9H0K4 717 aa17.49■□□□□ 0.39
TCOF1-209ENST00000506630 ATG3Q9NT62 314 aa17.49■□□□□ 0.39
TCOF1-209ENST00000506630 UBR3Q6ZT12 1888 aa17.48■□□□□ 0.39
TCOF1-209ENST00000506630 ERVV-2B6SEH9 535 aa17.48■□□□□ 0.39
TCOF1-209ENST00000506630 KIF3CO14782 793 aa17.48■□□□□ 0.39
TCOF1-209ENST00000506630 GNPATO15228 680 aa17.48■□□□□ 0.39
TCOF1-209ENST00000506630 GAS2L2Q8NHY3 880 aa17.47■□□□□ 0.39
TCOF1-209ENST00000506630 PRKRIP1Q9H875 184 aaPredicted RBP17.47■□□□□ 0.39
TCOF1-209ENST00000506630 SIPA1L3O60292 1781 aaPredicted RBP17.47■□□□□ 0.39
TCOF1-209ENST00000506630 ATP6V1AP38606 617 aa17.46■□□□□ 0.39
TCOF1-209ENST00000506630 CABP4P57796 275 aa17.46■□□□□ 0.39
TCOF1-209ENST00000506630 MRC1P22897 1456 aa17.45■□□□□ 0.38
TCOF1-209ENST00000506630 MMP10P09238 476 aa17.45■□□□□ 0.38
TCOF1-209ENST00000506630 APLP1P51693 650 aa17.45■□□□□ 0.38
TCOF1-209ENST00000506630 FCHSD2O94868 740 aa17.44■□□□□ 0.38
TCOF1-209ENST00000506630 TGFB2P61812 414 aa17.44■□□□□ 0.38
TCOF1-209ENST00000506630 PHACTR3Q96KR7 559 aa17.44■□□□□ 0.38
TCOF1-209ENST00000506630 ZNF831Q5JPB2 1677 aa17.44■□□□□ 0.38
TCOF1-209ENST00000506630 COL5A3P25940 1745 aaPredicted RBP17.44■□□□□ 0.38
TCOF1-209ENST00000506630 RNMTO43148 476 aaKnown RBP17.43■□□□□ 0.38
TCOF1-209ENST00000506630 TOMM70O94826 608 aa17.43■□□□□ 0.38
TCOF1-209ENST00000506630 NLGN1Q8N2Q7 840 aa17.43■□□□□ 0.38
TCOF1-209ENST00000506630 PIAS4Q8N2W9 510 aaPredicted RBP17.43■□□□□ 0.38
TCOF1-209ENST00000506630 LGR6Q9HBX8 967 aa17.43■□□□□ 0.38
TCOF1-209ENST00000506630 BCS1LQ9Y276 419 aa17.43■□□□□ 0.38
TCOF1-209ENST00000506630 GNAT3A8MTJ3 354 aa17.42■□□□□ 0.38
TCOF1-209ENST00000506630 NEFMP07197 916 aa17.42■□□□□ 0.38
TCOF1-209ENST00000506630 TRAPPC3LQ5T215 181 aa17.42■□□□□ 0.38
TCOF1-209ENST00000506630 NFATC2IPQ8NCF5 419 aa17.42■□□□□ 0.38
TCOF1-209ENST00000506630 RTCBQ9Y3I0 505 aaKnown RBP17.42■□□□□ 0.38
TCOF1-209ENST00000506630 UBR2Q8IWV8 1755 aa17.42■□□□□ 0.38
TCOF1-209ENST00000506630 ARHGAP27Q6ZUM4 889 aa17.41■□□□□ 0.38
TCOF1-209ENST00000506630 TJP1Q07157 1748 aa17.41■□□□□ 0.38
TCOF1-209ENST00000506630 A0A0G2JLW4 131 aa17.4■□□□□ 0.38
TCOF1-209ENST00000506630 RBM42Q9BTD8 480 aaKnown RBP17.4■□□□□ 0.38
TCOF1-209ENST00000506630 SLC52A2Q9HAB3 445 aa17.4■□□□□ 0.38
TCOF1-209ENST00000506630 MYH14Q7Z406 1995 aaKnown RBP17.4■□□□□ 0.38
TCOF1-209ENST00000506630 PXDNLA1KZ92 1463 aa17.39■□□□□ 0.37
TCOF1-209ENST00000506630 CCDC87Q9NVE4 849 aa17.39■□□□□ 0.37
TCOF1-209ENST00000506630 MAPK8IP3Q9UPT6 1336 aa17.39■□□□□ 0.37
TCOF1-209ENST00000506630 CICQ96RK0 1608 aaPredicted RBP17.39■□□□□ 0.37
TCOF1-209ENST00000506630 WDR43Q15061 677 aaKnown RBP eCLIP17.38■□□□□ 0.37
TCOF1-209ENST00000506630 PNNQ9H307 717 aaKnown RBP17.38■□□□□ 0.37
TCOF1-209ENST00000506630 RFC4P35249 363 aa17.37■□□□□ 0.37
TCOF1-209ENST00000506630 TEFQ10587 303 aa17.37■□□□□ 0.37
TCOF1-209ENST00000506630 RTF1Q92541 710 aaKnown RBP17.37■□□□□ 0.37
TCOF1-209ENST00000506630 PARP3Q9Y6F1 533 aa17.37■□□□□ 0.37
TCOF1-209ENST00000506630 ANP32CO43423 234 aa17.36■□□□□ 0.37
TCOF1-209ENST00000506630 PTCD1O75127 700 aaKnown RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms