RNA–Protein interactions for RNA: ENST00000505804.1

TOPBP1-204, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 472 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-204ENST00000505804 ESCO1Q5FWF5 840 aa7.66□□□□□ -1.18
TOPBP1-204ENST00000505804 LINC00528Q8N1L1 170 aa7.66□□□□□ -1.18
TOPBP1-204ENST00000505804 CRIPAKQ8N1N5 446 aa7.66□□□□□ -1.18
TOPBP1-204ENST00000505804 INSM2Q96T92 566 aaPredicted RBP7.66□□□□□ -1.18
TOPBP1-204ENST00000505804 DACH1Q9UI36 760 aa7.66□□□□□ -1.18
TOPBP1-204ENST00000505804 BMP2P12643 396 aa7.65□□□□□ -1.18
TOPBP1-204ENST00000505804 CLN3Q13286 438 aa7.65□□□□□ -1.18
TOPBP1-204ENST00000505804 TRIM46Q7Z4K8 759 aa7.65□□□□□ -1.18
TOPBP1-204ENST00000505804 TSEN2Q8NCE0 465 aaKnown RBP7.65□□□□□ -1.18
TOPBP1-204ENST00000505804 NLRP3Q96P20 1036 aa7.65□□□□□ -1.18
TOPBP1-204ENST00000505804 PURBQ96QR8 312 aaKnown RBP7.65□□□□□ -1.18
TOPBP1-204ENST00000505804 HINFPQ9BQA5 517 aa7.65□□□□□ -1.18
TOPBP1-204ENST00000505804 ESYT1Q9BSJ8 1104 aa7.65□□□□□ -1.18
TOPBP1-204ENST00000505804 TMEM88BA6NKF7 163 aa7.64□□□□□ -1.19
TOPBP1-204ENST00000505804 WASLO00401 505 aaPredicted RBP7.64□□□□□ -1.19
TOPBP1-204ENST00000505804 BACH1O14867 736 aa7.64□□□□□ -1.19
TOPBP1-204ENST00000505804 SPINT1O43278 529 aa7.64□□□□□ -1.19
TOPBP1-204ENST00000505804 CENPCQ03188 943 aa7.64□□□□□ -1.19
TOPBP1-204ENST00000505804 FAM69CQ0P6D2 419 aa7.64□□□□□ -1.19
TOPBP1-204ENST00000505804 SCARF1Q14162 830 aa7.64□□□□□ -1.19
TOPBP1-204ENST00000505804 TNS4Q8IZW8 715 aa7.64□□□□□ -1.19
TOPBP1-204ENST00000505804 SLC4A9Q96Q91 983 aa7.64□□□□□ -1.19
TOPBP1-204ENST00000505804 HRH3Q9Y5N1 445 aa7.64□□□□□ -1.19
TOPBP1-204ENST00000505804 M0R2N6 131 aa7.63□□□□□ -1.19
TOPBP1-204ENST00000505804 CTSOP43234 321 aaPredicted RBP7.63□□□□□ -1.19
TOPBP1-204ENST00000505804 SMTNP53814 917 aa7.63□□□□□ -1.19
TOPBP1-204ENST00000505804 Q6ZNB5 142 aa7.63□□□□□ -1.19
TOPBP1-204ENST00000505804 ZFP42Q96MM3 310 aa7.63□□□□□ -1.19
TOPBP1-204ENST00000505804 TLR1Q15399 786 aa7.62□□□□□ -1.19
TOPBP1-204ENST00000505804 POLMQ9NP87 494 aaPredicted RBP7.62□□□□□ -1.19
TOPBP1-204ENST00000505804 ATP13A2Q9NQ11 1180 aa7.62□□□□□ -1.19
TOPBP1-204ENST00000505804 A6NJY4 79 aa7.61□□□□□ -1.19
TOPBP1-204ENST00000505804 SWI5Q1ZZU3 235 aa7.61□□□□□ -1.19
TOPBP1-204ENST00000505804 GAS2L2Q8NHY3 880 aa7.61□□□□□ -1.19
TOPBP1-204ENST00000505804 SLAIN2Q9P270 581 aa7.61□□□□□ -1.19
TOPBP1-204ENST00000505804 USTQ9Y2C2 406 aa7.61□□□□□ -1.19
TOPBP1-204ENST00000505804 FIGNL2A6NMB9 653 aa7.6□□□□□ -1.19
TOPBP1-204ENST00000505804 PRMT3O60678 531 aa7.6□□□□□ -1.19
TOPBP1-204ENST00000505804 RNF144AP50876 292 aaPredicted RBP7.6□□□□□ -1.19
TOPBP1-204ENST00000505804 EPHA4P54764 986 aa7.6□□□□□ -1.19
TOPBP1-204ENST00000505804 PDE4CQ08493 712 aa7.6□□□□□ -1.19
TOPBP1-204ENST00000505804 MTFR1Q15390 333 aa7.6□□□□□ -1.19
TOPBP1-204ENST00000505804 SLC27A3Q5K4L6 730 aa7.6□□□□□ -1.19
TOPBP1-204ENST00000505804 TBCELQ5QJ74 424 aa7.6□□□□□ -1.19
TOPBP1-204ENST00000505804 FOXD4L5Q5VV16 416 aaPredicted RBP7.6□□□□□ -1.19
TOPBP1-204ENST00000505804 PRIMPOLQ96LW4 560 aa7.6□□□□□ -1.19
TOPBP1-204ENST00000505804 ZSCAN10Q96SZ4 725 aaPredicted RBP7.6□□□□□ -1.19
TOPBP1-204ENST00000505804 FHDC1Q9C0D6 1143 aaPredicted RBP7.6□□□□□ -1.19
TOPBP1-204ENST00000505804 GRIP2Q9C0E4 1043 aa7.6□□□□□ -1.19
TOPBP1-204ENST00000505804 CDK2AP1O14519 115 aa7.59□□□□□ -1.19
TOPBP1-204ENST00000505804 PDIA4P13667 645 aaKnown RBP7.59□□□□□ -1.19
TOPBP1-204ENST00000505804 GPC1P35052 558 aa7.59□□□□□ -1.19
TOPBP1-204ENST00000505804 CLP1Q92989 425 aaKnown RBP7.59□□□□□ -1.19
TOPBP1-204ENST00000505804 TSPAN10Q9H1Z9 355 aaPredicted RBP7.59□□□□□ -1.19
TOPBP1-204ENST00000505804 SCHIP1Q9P0W5 487 aaPredicted RBP7.59□□□□□ -1.19
TOPBP1-204ENST00000505804 USP3Q9Y6I4 520 aa7.59□□□□□ -1.19
TOPBP1-204ENST00000505804 ATAD2Q6PL18 1390 aa7.59□□□□□ -1.2
TOPBP1-204ENST00000505804 SOS2Q07890 1332 aaPredicted RBP7.58□□□□□ -1.2
TOPBP1-204ENST00000505804 TTLL8A6PVC2 850 aa7.58□□□□□ -1.2
TOPBP1-204ENST00000505804 LCE2BO14633 110 aa7.58□□□□□ -1.2
TOPBP1-204ENST00000505804 TMEM214Q6NUQ4 689 aaKnown RBP7.58□□□□□ -1.2
TOPBP1-204ENST00000505804 PRICKLE2Q7Z3G6 844 aa7.58□□□□□ -1.2
TOPBP1-204ENST00000505804 SCG3Q8WXD2 468 aaKnown RBP7.58□□□□□ -1.2
TOPBP1-204ENST00000505804 WEE1P30291 646 aa7.57□□□□□ -1.2
TOPBP1-204ENST00000505804 FOXK2Q01167 660 aa7.57□□□□□ -1.2
TOPBP1-204ENST00000505804 PPARGC1BQ86YN6 1023 aaKnown RBP7.57□□□□□ -1.2
TOPBP1-204ENST00000505804 SLC9A9Q8IVB4 645 aa7.57□□□□□ -1.2
TOPBP1-204ENST00000505804 RNF217Q8TC41 542 aa7.57□□□□□ -1.2
TOPBP1-204ENST00000505804 CHMP7Q8WUX9 453 aaPredicted RBP7.57□□□□□ -1.2
TOPBP1-204ENST00000505804 TRAIPQ9BWF2 469 aa7.57□□□□□ -1.2
TOPBP1-204ENST00000505804 IQSEC3Q9UPP2 1182 aaPredicted RBP7.57□□□□□ -1.2
TOPBP1-204ENST00000505804 C21orf2O43822 256 aa7.56□□□□□ -1.2
TOPBP1-204ENST00000505804 ATP2B4P23634 1241 aa7.56□□□□□ -1.2
TOPBP1-204ENST00000505804 GTF2E1P29083 439 aaPredicted RBP7.56□□□□□ -1.2
TOPBP1-204ENST00000505804 POU4F2Q12837 409 aa7.56□□□□□ -1.2
TOPBP1-204ENST00000505804 LYSMD3Q7Z3D4 306 aa7.56□□□□□ -1.2
TOPBP1-204ENST00000505804 SOBPA7XYQ1 873 aa7.55□□□□□ -1.2
TOPBP1-204ENST00000505804 PHKA2P46019 1235 aa7.55□□□□□ -1.2
TOPBP1-204ENST00000505804 OCLNQ16625 522 aa7.55□□□□□ -1.2
TOPBP1-204ENST00000505804 CABP1Q9NZU7 370 aa7.55□□□□□ -1.2
TOPBP1-204ENST00000505804 GMPR2Q9P2T1 348 aaKnown RBP7.55□□□□□ -1.2
TOPBP1-204ENST00000505804 DNMT3LQ9UJW3 386 aa7.55□□□□□ -1.2
TOPBP1-204ENST00000505804 PARP3Q9Y6F1 533 aa7.55□□□□□ -1.2
TOPBP1-204ENST00000505804 PPP1R12BO60237 982 aaPredicted RBP7.54□□□□□ -1.2
TOPBP1-204ENST00000505804 MAN1A2O60476 641 aa7.54□□□□□ -1.2
TOPBP1-204ENST00000505804 RHOQP17081 205 aa7.54□□□□□ -1.2
TOPBP1-204ENST00000505804 IGFBP4P22692 258 aa7.54□□□□□ -1.2
TOPBP1-204ENST00000505804 SSFA2P28290 1259 aa7.54□□□□□ -1.2
TOPBP1-204ENST00000505804 SCNN1AP37088 669 aa7.54□□□□□ -1.2
TOPBP1-204ENST00000505804 PHLDB3Q6NSJ2 640 aa7.54□□□□□ -1.2
TOPBP1-204ENST00000505804 RHBDD1Q8TEB9 315 aa7.54□□□□□ -1.2
TOPBP1-204ENST00000505804 NIFKQ9BYG3 293 aaKnown RBP7.54□□□□□ -1.2
TOPBP1-204ENST00000505804 SENP2Q9HC62 589 aa7.54□□□□□ -1.2
TOPBP1-204ENST00000505804 SPATA31C2B4DYI2 1134 aa7.53□□□□□ -1.2
TOPBP1-204ENST00000505804 C4orf17Q53FE4 359 aa7.53□□□□□ -1.2
TOPBP1-204ENST00000505804 GNASQ5JWF2 1037 aa7.53□□□□□ -1.2
TOPBP1-204ENST00000505804 ZNF295-AS1Q8N0V1 137 aa7.53□□□□□ -1.2
TOPBP1-204ENST00000505804 ZDHHC1Q8WTX9 485 aa7.53□□□□□ -1.2
TOPBP1-204ENST00000505804 CXXC1Q9P0U4 656 aaPredicted RBP7.53□□□□□ -1.2
TOPBP1-204ENST00000505804 POTECB2RU33 542 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms