RNA–Protein interactions for RNA: ENST00000505054.2

SYNE4-207, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 3

Gene SYNE4, Length 713 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-207ENST00000505054 CYP27B1O15528 508 aa22.63■■□□□ 1.21
SYNE4-207ENST00000505054 PLEKHG2Q9H7P9 1386 aa22.63■■□□□ 1.21
SYNE4-207ENST00000505054 MYBBP1AQ9BQG0 1328 aaKnown RBP22.62■■□□□ 1.21
SYNE4-207ENST00000505054 MPRIPQ6WCQ1 1025 aa22.62■■□□□ 1.21
SYNE4-207ENST00000505054 SMARCC1Q92922 1105 aaPredicted RBP22.61■■□□□ 1.21
SYNE4-207ENST00000505054 U2SURPO15042 1029 aaKnown RBP22.6■■□□□ 1.21
SYNE4-207ENST00000505054 HMOX1P09601 288 aa22.6■■□□□ 1.21
SYNE4-207ENST00000505054 CD2APQ9Y5K6 639 aa22.6■■□□□ 1.21
SYNE4-207ENST00000505054 AK7Q96M32 723 aa22.59■■□□□ 1.21
SYNE4-207ENST00000505054 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.59■■□□□ 1.21
SYNE4-207ENST00000505054 SPG7Q9UQ90 795 aa22.57■■□□□ 1.2
SYNE4-207ENST00000505054 ATP10DQ9P241 1426 aa22.57■■□□□ 1.2
SYNE4-207ENST00000505054 NKX1-1Q15270 411 aaPredicted RBP22.56■■□□□ 1.2
SYNE4-207ENST00000505054 NUDCQ9Y266 331 aa22.55■■□□□ 1.2
SYNE4-207ENST00000505054 PIGBQ92521 554 aa22.54■■□□□ 1.2
SYNE4-207ENST00000505054 ADCY9O60503 1353 aa22.53■■□□□ 1.2
SYNE4-207ENST00000505054 SSFA2P28290 1259 aa22.53■■□□□ 1.2
SYNE4-207ENST00000505054 PLEKHO1Q53GL0 409 aaPredicted RBP22.53■■□□□ 1.2
SYNE4-207ENST00000505054 AMIGO3Q86WK7 504 aa22.53■■□□□ 1.2
SYNE4-207ENST00000505054 PHF14O94880 888 aa22.52■■□□□ 1.2
SYNE4-207ENST00000505054 U2AF1L5P0DN76 240 aaPredicted RBP22.52■■□□□ 1.2
SYNE4-207ENST00000505054 PHKG2P15735 406 aa22.52■■□□□ 1.2
SYNE4-207ENST00000505054 U2AF1Q01081 240 aaKnown RBP eCLIP22.52■■□□□ 1.2
SYNE4-207ENST00000505054 AMOTQ4VCS5 1084 aa22.52■■□□□ 1.2
SYNE4-207ENST00000505054 RSPH6AQ9H0K4 717 aa22.52■■□□□ 1.2
SYNE4-207ENST00000505054 ZNF831Q5JPB2 1677 aa22.52■■□□□ 1.2
SYNE4-207ENST00000505054 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.51■■□□□ 1.19
SYNE4-207ENST00000505054 KIF13BQ9NQT8 1826 aa22.5■■□□□ 1.19
SYNE4-207ENST00000505054 CICQ96RK0 1608 aaPredicted RBP22.5■■□□□ 1.19
SYNE4-207ENST00000505054 LOC102724428A0A0B4J2F2 783 aa22.5■■□□□ 1.19
SYNE4-207ENST00000505054 SIK1P57059 783 aa22.5■■□□□ 1.19
SYNE4-207ENST00000505054 ZNF530Q6P9A1 599 aaPredicted RBP22.5■■□□□ 1.19
SYNE4-207ENST00000505054 IFNL2Q8IZJ0 200 aa22.5■■□□□ 1.19
SYNE4-207ENST00000505054 TMOD3Q9NYL9 352 aa22.5■■□□□ 1.19
SYNE4-207ENST00000505054 LINC00116Q8NCU8 138 aa22.49■■□□□ 1.19
SYNE4-207ENST00000505054 COL5A3P25940 1745 aaPredicted RBP22.48■■□□□ 1.19
SYNE4-207ENST00000505054 ANP32CO43423 234 aa22.48■■□□□ 1.19
SYNE4-207ENST00000505054 PRKAR2BP31323 418 aa22.48■■□□□ 1.19
SYNE4-207ENST00000505054 KIAA1551Q9HCM1 1747 aa22.47■■□□□ 1.19
SYNE4-207ENST00000505054 CEP350Q5VT06 3117 aa22.46■■□□□ 1.19
SYNE4-207ENST00000505054 FCHSD2O94868 740 aa22.46■■□□□ 1.19
SYNE4-207ENST00000505054 MTHFSDQ2M296 383 aaKnown RBP22.46■■□□□ 1.19
SYNE4-207ENST00000505054 GPBP1L1Q9HC44 474 aaPredicted RBP22.46■■□□□ 1.19
SYNE4-207ENST00000505054 KDM6AO15550 1401 aaPredicted RBP22.46■■□□□ 1.19
SYNE4-207ENST00000505054 SMIM5Q71RC9 77 aa22.45■■□□□ 1.18
SYNE4-207ENST00000505054 PHACTR3Q96KR7 559 aa22.45■■□□□ 1.18
SYNE4-207ENST00000505054 GNPATO15228 680 aa22.44■■□□□ 1.18
SYNE4-207ENST00000505054 ITPK1Q13572 414 aa22.44■■□□□ 1.18
SYNE4-207ENST00000505054 ASAP1Q9ULH1 1129 aa22.44■■□□□ 1.18
SYNE4-207ENST00000505054 ATP6V1AP38606 617 aa22.43■■□□□ 1.18
SYNE4-207ENST00000505054 CCDC184Q52MB2 194 aa22.43■■□□□ 1.18
SYNE4-207ENST00000505054 C1orf141Q5JVX7 400 aa22.43■■□□□ 1.18
SYNE4-207ENST00000505054 HSP90AB1P08238 724 aaKnown RBP22.42■■□□□ 1.18
SYNE4-207ENST00000505054 AKAP4Q5JQC9 854 aa22.42■■□□□ 1.18
SYNE4-207ENST00000505054 N4BP2Q86UW6 1770 aaPredicted RBP22.42■■□□□ 1.18
SYNE4-207ENST00000505054 C4AP0C0L4 1744 aa22.42■■□□□ 1.18
SYNE4-207ENST00000505054 DCAF5Q96JK2 942 aa22.41■■□□□ 1.18
SYNE4-207ENST00000505054 ATG3Q9NT62 314 aa22.41■■□□□ 1.18
SYNE4-207ENST00000505054 PXDNLA1KZ92 1463 aa22.41■■□□□ 1.18
SYNE4-207ENST00000505054 PLEKHF1Q96S99 279 aa22.4■■□□□ 1.18
SYNE4-207ENST00000505054 BRCA1P38398 1863 aaKnown RBP22.39■■□□□ 1.18
SYNE4-207ENST00000505054 GAS2L2Q8NHY3 880 aa22.39■■□□□ 1.17
SYNE4-207ENST00000505054 WWC3Q9ULE0 1092 aa22.39■■□□□ 1.17
SYNE4-207ENST00000505054 ZNF526Q8TF50 670 aaPredicted RBP22.38■■□□□ 1.17
SYNE4-207ENST00000505054 ADAMTS7Q9UKP4 1686 aa22.38■■□□□ 1.17
SYNE4-207ENST00000505054 C10orf71Q711Q0 1435 aa22.38■■□□□ 1.17
SYNE4-207ENST00000505054 MMP10P09238 476 aa22.37■■□□□ 1.17
SYNE4-207ENST00000505054 ERVV-2B6SEH9 535 aa22.36■■□□□ 1.17
SYNE4-207ENST00000505054 WDR43Q15061 677 aaKnown RBP eCLIP22.36■■□□□ 1.17
SYNE4-207ENST00000505054 MYH14Q7Z406 1995 aaKnown RBP22.36■■□□□ 1.17
SYNE4-207ENST00000505054 LGR6Q9HBX8 967 aa22.35■■□□□ 1.17
SYNE4-207ENST00000505054 ADAMTS8Q9UP79 889 aa22.35■■□□□ 1.17
SYNE4-207ENST00000505054 RTCBQ9Y3I0 505 aaKnown RBP22.35■■□□□ 1.17
SYNE4-207ENST00000505054 SCN11AQ9UI33 1791 aa22.35■■□□□ 1.17
SYNE4-207ENST00000505054 MRC1P22897 1456 aa22.34■■□□□ 1.17
SYNE4-207ENST00000505054 CNTNAP4Q9C0A0 1308 aa22.34■■□□□ 1.17
SYNE4-207ENST00000505054 RNMTO43148 476 aaKnown RBP22.34■■□□□ 1.17
SYNE4-207ENST00000505054 HSPA6P17066 643 aa22.34■■□□□ 1.17
SYNE4-207ENST00000505054 ADRA2BP18089 450 aa22.34■■□□□ 1.17
SYNE4-207ENST00000505054 ARFGEF1Q9Y6D6 1849 aa22.34■■□□□ 1.17
SYNE4-207ENST00000505054 GNAT3A8MTJ3 354 aa22.33■■□□□ 1.17
SYNE4-207ENST00000505054 TRAPPC3LQ5T215 181 aa22.33■■□□□ 1.17
SYNE4-207ENST00000505054 SLC4A9Q96Q91 983 aa22.33■■□□□ 1.17
SYNE4-207ENST00000505054 MRS2Q9HD23 443 aa22.33■■□□□ 1.17
SYNE4-207ENST00000505054 TJP1Q07157 1748 aa22.32■■□□□ 1.16
SYNE4-207ENST00000505054 CABP4P57796 275 aa22.32■■□□□ 1.16
SYNE4-207ENST00000505054 TGFB2P61812 414 aa22.32■■□□□ 1.16
SYNE4-207ENST00000505054 RC3H1Q5TC82 1133 aaKnown RBP22.32■■□□□ 1.16
SYNE4-207ENST00000505054 NLGN1Q8N2Q7 840 aa22.32■■□□□ 1.16
SYNE4-207ENST00000505054 RBM42Q9BTD8 480 aaKnown RBP22.32■■□□□ 1.16
SYNE4-207ENST00000505054 PNNQ9H307 717 aaKnown RBP22.32■■□□□ 1.16
SYNE4-207ENST00000505054 MAPK8IP3Q9UPT6 1336 aa22.31■■□□□ 1.16
SYNE4-207ENST00000505054 IL17REQ8NFR9 667 aa22.31■■□□□ 1.16
SYNE4-207ENST00000505054 NEFMP07197 916 aa22.3■■□□□ 1.16
SYNE4-207ENST00000505054 CCDC146Q8IYE0 955 aa22.3■■□□□ 1.16
SYNE4-207ENST00000505054 CEMIPQ8WUJ3 1361 aa22.29■■□□□ 1.16
SYNE4-207ENST00000505054 KIF3CO14782 793 aa22.29■■□□□ 1.16
SYNE4-207ENST00000505054 NFE2L2Q16236 605 aa22.29■■□□□ 1.16
SYNE4-207ENST00000505054 IFFO2Q5TF58 517 aa22.29■■□□□ 1.16
SYNE4-207ENST00000505054 NFATC2IPQ8NCF5 419 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms