RNA–Protein interactions for RNA: ENST00000499045.2

CHFR-206, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 2

Gene CHFR, Length 505 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-206	ENST00000499045	MRC1	P22897	1456 aa		33.75	■■■□□ 2.99
CHFR-206	ENST00000499045	NFATC2IP	Q8NCF5	419 aa		33.74	■■■□□ 2.99
CHFR-206	ENST00000499045	LOC102724428	A0A0B4J2F2	783 aa		33.73	■■■□□ 2.99
CHFR-206	ENST00000499045	SIK1	P57059	783 aa		33.73	■■■□□ 2.99
CHFR-206	ENST00000499045	QSER1	Q2KHR3	1735 aa		33.73	■■■□□ 2.99
CHFR-206	ENST00000499045	MAP3K5	Q99683	1374 aa		33.72	■■■□□ 2.99
CHFR-206	ENST00000499045	SLC52A2	Q9HAB3	445 aa		33.71	■■■□□ 2.99
CHFR-206	ENST00000499045	TUBGCP6	Q96RT7	1819 aa		33.7	■■■□□ 2.99
CHFR-206	ENST00000499045	HMGB2	P26583	209 aa	Known RBP	33.7	■■■□□ 2.99
CHFR-206	ENST00000499045	GNAT3	A8MTJ3	354 aa		33.68	■■■□□ 2.98
CHFR-206	ENST00000499045	ZNF831	Q5JPB2	1677 aa		33.68	■■■□□ 2.98
CHFR-206	ENST00000499045	IL17RE	Q8NFR9	667 aa		33.67	■■■□□ 2.98
CHFR-206	ENST00000499045	C4B	P0C0L5	1744 aa		33.66	■■■□□ 2.98
CHFR-206	ENST00000499045	PNPLA7	Q6ZV29	1317 aa		33.66	■■■□□ 2.98
CHFR-206	ENST00000499045	SLC4A9	Q96Q91	983 aa		33.66	■■■□□ 2.98
CHFR-206	ENST00000499045	TFCP2L1	Q9NZI6	479 aa		33.66	■■■□□ 2.98
CHFR-206	ENST00000499045	ITPK1	Q13572	414 aa		33.65	■■■□□ 2.98
CHFR-206	ENST00000499045	PLEKHF1	Q96S99	279 aa		33.65	■■■□□ 2.98
CHFR-206	ENST00000499045	SPON1	Q9HCB6	807 aa		33.64	■■■□□ 2.98
CHFR-206	ENST00000499045	ATP6V1A	P38606	617 aa		33.63	■■■□□ 2.97
CHFR-206	ENST00000499045	LINC00116	Q8NCU8	138 aa		33.63	■■■□□ 2.97
CHFR-206	ENST00000499045	CEMIP	Q8WUJ3	1361 aa		33.61	■■■□□ 2.97
CHFR-206	ENST00000499045	ZBTB7A	O95365	584 aa		33.61	■■■□□ 2.97
CHFR-206	ENST00000499045	RBM42	Q9BTD8	480 aa	Known RBP	33.6	■■■□□ 2.97
CHFR-206	ENST00000499045	SIPA1L3	O60292	1781 aa	Predicted RBP	33.6	■■■□□ 2.97
CHFR-206	ENST00000499045	MTFR1L	Q9H019	292 aa		33.58	■■■□□ 2.97
CHFR-206	ENST00000499045	PTCD1	O75127	700 aa	Known RBP	33.57	■■■□□ 2.96
CHFR-206	ENST00000499045	PNN	Q9H307	717 aa	Known RBP	33.57	■■■□□ 2.96
CHFR-206	ENST00000499045	CIC	Q96RK0	1608 aa	Predicted RBP	33.57	■■■□□ 2.96
CHFR-206	ENST00000499045	UBR3	Q6ZT12	1888 aa		33.56	■■■□□ 2.96
CHFR-206	ENST00000499045	COL5A3	P25940	1745 aa	Predicted RBP	33.56	■■■□□ 2.96
CHFR-206	ENST00000499045	SLC16A10	Q8TF71	515 aa		33.56	■■■□□ 2.96
CHFR-206	ENST00000499045	HTATSF1	O43719	755 aa	Known RBP	33.55	■■■□□ 2.96
CHFR-206	ENST00000499045	PTGER2	P43116	358 aa		33.55	■■■□□ 2.96
CHFR-206	ENST00000499045	SLC39A6	Q13433	755 aa		33.55	■■■□□ 2.96
CHFR-206	ENST00000499045	COL23A1	Q86Y22	540 aa	Predicted RBP	33.55	■■■□□ 2.96
CHFR-206	ENST00000499045	AK7	Q96M32	723 aa		33.55	■■■□□ 2.96
CHFR-206	ENST00000499045	ATF5	Q9Y2D1	282 aa	Predicted RBP	33.55	■■■□□ 2.96
CHFR-206	ENST00000499045	NEFM	P07197	916 aa		33.54	■■■□□ 2.96
CHFR-206	ENST00000499045	TEF	Q10587	303 aa		33.54	■■■□□ 2.96
CHFR-206	ENST00000499045	AMIGO3	Q86WK7	504 aa		33.54	■■■□□ 2.96
CHFR-206	ENST00000499045	KCP	Q6ZWJ8	1503 aa		33.53	■■■□□ 2.96
CHFR-206	ENST00000499045	SGIP1	Q9BQI5	828 aa		33.53	■■■□□ 2.96
CHFR-206	ENST00000499045	TJP1	Q07157	1748 aa		33.53	■■■□□ 2.96
CHFR-206	ENST00000499045	UBR2	Q8IWV8	1755 aa		33.52	■■■□□ 2.96
CHFR-206	ENST00000499045	DLG5	Q8TDM6	1919 aa		33.52	■■■□□ 2.96
CHFR-206	ENST00000499045	COL24A1	Q17RW2	1714 aa		33.52	■■■□□ 2.96
CHFR-206	ENST00000499045	FLAD1	Q8NFF5	587 aa		33.51	■■■□□ 2.95
CHFR-206	ENST00000499045	RTF1	Q92541	710 aa	Known RBP	33.51	■■■□□ 2.95
CHFR-206	ENST00000499045	NFE2L2	Q16236	605 aa		33.5	■■■□□ 2.95
CHFR-206	ENST00000499045	MCM10	Q7L590	875 aa		33.5	■■■□□ 2.95
CHFR-206	ENST00000499045	RC3H1	Q5TC82	1133 aa	Known RBP	33.49	■■■□□ 2.95
CHFR-206	ENST00000499045	CNTNAP4	Q9C0A0	1308 aa		33.49	■■■□□ 2.95
CHFR-206	ENST00000499045	SSFA2	P28290	1259 aa		33.48	■■■□□ 2.95
CHFR-206	ENST00000499045	MYH14	Q7Z406	1995 aa	Known RBP	33.48	■■■□□ 2.95
CHFR-206	ENST00000499045	MAPK8IP3	Q9UPT6	1336 aa		33.48	■■■□□ 2.95
CHFR-206	ENST00000499045	GNPAT	O15228	680 aa		33.47	■■■□□ 2.95
CHFR-206	ENST00000499045	DCTN1	Q14203	1278 aa		33.47	■■■□□ 2.95
CHFR-206	ENST00000499045	SMIM5	Q71RC9	77 aa		33.47	■■■□□ 2.95
CHFR-206	ENST00000499045	ZNF790	Q6PG37	636 aa		33.46	■■■□□ 2.95
CHFR-206	ENST00000499045	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	33.45	■■■□□ 2.95
CHFR-206	ENST00000499045	WDR43	Q15061	677 aa	Known RBP eCLIP	33.45	■■■□□ 2.95
CHFR-206	ENST00000499045	VSIG10	Q8N0Z9	540 aa		33.44	■■■□□ 2.94
CHFR-206	ENST00000499045	ADAMTS8	Q9UP79	889 aa		33.44	■■■□□ 2.94
CHFR-206	ENST00000499045	MSH5	O43196	834 aa		33.43	■■■□□ 2.94
CHFR-206	ENST00000499045	DNAJC10	Q8IXB1	793 aa		33.43	■■■□□ 2.94
CHFR-206	ENST00000499045	TTC5	Q8N0Z6	440 aa		33.43	■■■□□ 2.94
CHFR-206	ENST00000499045	PHF14	O94880	888 aa		33.42	■■■□□ 2.94
CHFR-206	ENST00000499045	PPP1R1B	Q9UD71	204 aa	Predicted RBP	33.42	■■■□□ 2.94
CHFR-206	ENST00000499045	BTBD11	A6QL63	1104 aa		33.41	■■■□□ 2.94
CHFR-206	ENST00000499045	CRKL	P46109	303 aa	Known RBP	33.41	■■■□□ 2.94
CHFR-206	ENST00000499045	ZNF496	Q96IT1	587 aa	Predicted RBP	33.41	■■■□□ 2.94
CHFR-206	ENST00000499045	RPS6KA4	O75676	772 aa		33.4	■■■□□ 2.94
CHFR-206	ENST00000499045	RTCB	Q9Y3I0	505 aa	Known RBP	33.4	■■■□□ 2.94
CHFR-206	ENST00000499045	ANP32C	O43423	234 aa		33.39	■■■□□ 2.94
CHFR-206	ENST00000499045	CCDC184	Q52MB2	194 aa		33.39	■■■□□ 2.94
CHFR-206	ENST00000499045	KCNQ3	O43525	872 aa		33.38	■■■□□ 2.93
CHFR-206	ENST00000499045	CYP19A1	P11511	503 aa	Predicted RBP	33.38	■■■□□ 2.93
CHFR-206	ENST00000499045	INTS5	Q6P9B9	1019 aa	Known RBP	33.38	■■■□□ 2.93
CHFR-206	ENST00000499045	CCDC146	Q8IYE0	955 aa		33.38	■■■□□ 2.93
CHFR-206	ENST00000499045	RUNDC1	Q96C34	613 aa		33.38	■■■□□ 2.93
CHFR-206	ENST00000499045	HEG1	Q9ULI3	1381 aa		33.37	■■■□□ 2.93
CHFR-206	ENST00000499045	TMPO	P42166	694 aa	Known RBP	33.37	■■■□□ 2.93
CHFR-206	ENST00000499045	ADRA2B	P18089	450 aa		33.36	■■■□□ 2.93
CHFR-206	ENST00000499045	TAF7	Q15545	349 aa	Predicted RBP	33.36	■■■□□ 2.93
CHFR-206	ENST00000499045	RIPK4	P57078	832 aa		33.35	■■■□□ 2.93
CHFR-206	ENST00000499045	TRAPPC3L	Q5T215	181 aa		33.35	■■■□□ 2.93
CHFR-206	ENST00000499045	FMNL2	Q96PY5	1086 aa		33.35	■■■□□ 2.93
CHFR-206	ENST00000499045	ARX	Q96QS3	562 aa		33.35	■■■□□ 2.93
CHFR-206	ENST00000499045	POLD1	P28340	1107 aa		33.34	■■■□□ 2.93
CHFR-206	ENST00000499045	THUMPD2	Q9BTF0	503 aa	Known RBP	33.34	■■■□□ 2.93
CHFR-206	ENST00000499045	CCDC87	Q9NVE4	849 aa		33.34	■■■□□ 2.93
CHFR-206	ENST00000499045	MSL1	Q68DK7	614 aa		33.33	■■■□□ 2.93
CHFR-206	ENST00000499045	ARHGEF1	Q92888	912 aa	Known RBP	33.33	■■■□□ 2.93
CHFR-206	ENST00000499045	C4A	P0C0L4	1744 aa		33.31	■■■□□ 2.92
CHFR-206	ENST00000499045	TEX13A	Q9BXU3	409 aa	Predicted RBP	33.29	■■■□□ 2.92
CHFR-206	ENST00000499045	RRP7A	Q9Y3A4	280 aa	Known RBP	33.29	■■■□□ 2.92
CHFR-206	ENST00000499045	KDM3B	Q7LBC6	1761 aa		33.29	■■■□□ 2.92
CHFR-206	ENST00000499045	LMOD3	Q0VAK6	560 aa		33.28	■■■□□ 2.92
CHFR-206	ENST00000499045	PNISR	Q8TF01	805 aa	Known RBP	33.28	■■■□□ 2.92

Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms