RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 LAS1LQ9Y4W2 734 aaKnown RBP15.59■□□□□ 0.09
CUX1-210ENST00000497815 ITGB4P16144 1822 aa15.59■□□□□ 0.09
CUX1-210ENST00000497815 HNRNPUQ00839 825 aaKnown RBP eCLIP15.58■□□□□ 0.081e-6■■■■□ 21.8
CUX1-210ENST00000497815 WWC1Q8IX03 1113 aa15.58■□□□□ 0.08
CUX1-210ENST00000497815 UPF1Q92900 1129 aaKnown RBP eCLIP15.58■□□□□ 0.08
CUX1-210ENST00000497815 MIS18AQ9NYP9 233 aa15.58■□□□□ 0.08
CUX1-210ENST00000497815 ASAP1Q9ULH1 1129 aa15.58■□□□□ 0.08
CUX1-210ENST00000497815 VIRMAQ69YN4 1812 aaKnown RBP15.58■□□□□ 0.08
CUX1-210ENST00000497815 TNS1Q9HBL0 1735 aaKnown RBP15.57■□□□□ 0.08
CUX1-210ENST00000497815 EP400Q96L91 3159 aa15.57■□□□□ 0.08
CUX1-210ENST00000497815 BTAF1O14981 1849 aa15.57■□□□□ 0.08
CUX1-210ENST00000497815 BTBD11A6QL63 1104 aa15.57■□□□□ 0.08
CUX1-210ENST00000497815 SLC39A6Q13433 755 aa15.57■□□□□ 0.08
CUX1-210ENST00000497815 CCDC27Q2M243 656 aa15.57■□□□□ 0.08
CUX1-210ENST00000497815 TAF7Q15545 349 aaPredicted RBP15.56■□□□□ 0.08
CUX1-210ENST00000497815 ATG3Q9NT62 314 aa15.56■□□□□ 0.08
CUX1-210ENST00000497815 KAT6BQ8WYB5 2073 aa15.55■□□□□ 0.08
CUX1-210ENST00000497815 PALLDQ8WX93 1383 aa15.55■□□□□ 0.08
CUX1-210ENST00000497815 DEFB132Q7Z7B7 95 aa15.55■□□□□ 0.08
CUX1-210ENST00000497815 CCDC125Q86Z20 511 aa15.55■□□□□ 0.08
CUX1-210ENST00000497815 KCNQ3O43525 872 aa15.54■□□□□ 0.08
CUX1-210ENST00000497815 PTCD1O75127 700 aaKnown RBP15.54■□□□□ 0.08
CUX1-210ENST00000497815 BAG6P46379 1132 aa15.54■□□□□ 0.08
CUX1-210ENST00000497815 CALD1Q05682 793 aaKnown RBP15.54■□□□□ 0.08
CUX1-210ENST00000497815 EN1Q05925 392 aaPredicted RBP15.54■□□□□ 0.08
CUX1-210ENST00000497815 NCBP3Q53F19 620 aaKnown RBP15.54■□□□□ 0.08
CUX1-210ENST00000497815 TTC5Q8N0Z6 440 aa15.54■□□□□ 0.08
CUX1-210ENST00000497815 NGEFQ8N5V2 710 aa15.54■□□□□ 0.08
CUX1-210ENST00000497815 SMARCC1Q92922 1105 aaPredicted RBP15.54■□□□□ 0.08
CUX1-210ENST00000497815 YTHDC1Q96MU7 727 aaKnown RBP15.54■□□□□ 0.08
CUX1-210ENST00000497815 RBM42Q9BTD8 480 aaKnown RBP15.54■□□□□ 0.08
CUX1-210ENST00000497815 TSPYL4Q9UJ04 414 aa15.54■□□□□ 0.08
CUX1-210ENST00000497815 SIPA1L3O60292 1781 aaPredicted RBP15.54■□□□□ 0.08
CUX1-210ENST00000497815 KCNQ4P56696 695 aa15.52■□□□□ 0.08
CUX1-210ENST00000497815 EZH2Q15910 746 aaKnown RBP15.52■□□□□ 0.08
CUX1-210ENST00000497815 ZNF790Q6PG37 636 aa15.52■□□□□ 0.08
CUX1-210ENST00000497815 PAPPAQ13219 1627 aa15.51■□□□□ 0.07
CUX1-210ENST00000497815 PLSCR1O15162 318 aa15.51■□□□□ 0.07
CUX1-210ENST00000497815 GNAI1P63096 354 aa15.51■□□□□ 0.07
CUX1-210ENST00000497815 WDR63Q8IWG1 891 aa15.51■□□□□ 0.07
CUX1-210ENST00000497815 IFT57Q9NWB7 429 aa15.51■□□□□ 0.07
CUX1-210ENST00000497815 ZNF521Q96K83 1311 aa15.5■□□□□ 0.07
CUX1-210ENST00000497815 CHL1O00533 1208 aa15.5■□□□□ 0.07
CUX1-210ENST00000497815 TXNRD1Q16881 649 aa15.5■□□□□ 0.07
CUX1-210ENST00000497815 TSR2Q969E8 191 aaKnown RBP15.5■□□□□ 0.07
CUX1-210ENST00000497815 ZNF496Q96IT1 587 aaPredicted RBP15.5■□□□□ 0.07
CUX1-210ENST00000497815 CFAP44Q96MT7 982 aa15.5■□□□□ 0.07
CUX1-210ENST00000497815 MBIPQ9NS73 344 aa15.5■□□□□ 0.07
CUX1-210ENST00000497815 CCNL1Q9UK58 526 aaPredicted RBP15.5■□□□□ 0.07
CUX1-210ENST00000497815 KCPQ6ZWJ8 1503 aa15.49■□□□□ 0.07
CUX1-210ENST00000497815 LOC102724428A0A0B4J2F2 783 aa15.49■□□□□ 0.07
CUX1-210ENST00000497815 SOCS7O14512 581 aa15.49■□□□□ 0.07
CUX1-210ENST00000497815 ATP6V1AP38606 617 aa15.49■□□□□ 0.07
CUX1-210ENST00000497815 SIK1P57059 783 aa15.49■□□□□ 0.07
CUX1-210ENST00000497815 CAMKK2Q96RR4 588 aa15.49■□□□□ 0.07
CUX1-210ENST00000497815 SPINK5Q9NQ38 1064 aaPredicted RBP15.49■□□□□ 0.07
CUX1-210ENST00000497815 IL16Q14005 1332 aa15.48■□□□□ 0.07
CUX1-210ENST00000497815 ZNF853P0CG23 659 aa15.48■□□□□ 0.07
CUX1-210ENST00000497815 GOLGA2Q08379 1002 aa15.48■□□□□ 0.07
CUX1-210ENST00000497815 PROM2Q8N271 834 aa15.48■□□□□ 0.07
CUX1-210ENST00000497815 FMNL2Q96PY5 1086 aa15.48■□□□□ 0.07
CUX1-210ENST00000497815 SLC4A9Q96Q91 983 aa15.48■□□□□ 0.07
CUX1-210ENST00000497815 BABAM1Q9NWV8 329 aa15.48■□□□□ 0.07
CUX1-210ENST00000497815 KDM3BQ7LBC6 1761 aa15.48■□□□□ 0.07
CUX1-210ENST00000497815 EIF4A1P60842 406 aaKnown RBP15.47■□□□□ 0.07
CUX1-210ENST00000497815 CDCA7LQ96GN5 454 aa15.47■□□□□ 0.07
CUX1-210ENST00000497815 LRRC4BQ9NT99 713 aa15.47■□□□□ 0.07
CUX1-210ENST00000497815 LY75O60449 1722 aa15.46■□□□□ 0.07
CUX1-210ENST00000497815 ITPK1Q13572 414 aa15.46■□□□□ 0.07
CUX1-210ENST00000497815 KRT24Q2M2I5 525 aa15.46■□□□□ 0.07
CUX1-210ENST00000497815 UBR2Q8IWV8 1755 aa15.46■□□□□ 0.07
CUX1-210ENST00000497815 HEG1Q9ULI3 1381 aa15.46■□□□□ 0.07
CUX1-210ENST00000497815 ZBED9Q6R2W3 1325 aa15.45■□□□□ 0.06
CUX1-210ENST00000497815 FANCIQ9NVI1 1328 aa15.45■□□□□ 0.06
CUX1-210ENST00000497815 PRAMEF22A3QJZ6 481 aa15.45■□□□□ 0.06
CUX1-210ENST00000497815 SLC27A3Q5K4L6 730 aa15.45■□□□□ 0.06
CUX1-210ENST00000497815 DNAJC10Q8IXB1 793 aa15.45■□□□□ 0.06
CUX1-210ENST00000497815 MYH16Q9H6N6 1097 aa15.45■□□□□ 0.06
CUX1-210ENST00000497815 RGPD3A6NKT7 1758 aaPredicted RBP15.44■□□□□ 0.06
CUX1-210ENST00000497815 RGPD4Q7Z3J3 1758 aa15.44■□□□□ 0.06
CUX1-210ENST00000497815 SNRPA1P09661 255 aaKnown RBP15.44■□□□□ 0.06
CUX1-210ENST00000497815 LINC00116Q8NCU8 138 aa15.44■□□□□ 0.06
CUX1-210ENST00000497815 E9PSI1 815 aa15.43■□□□□ 0.06
CUX1-210ENST00000497815 ELL2O00472 640 aaPredicted RBP15.43■□□□□ 0.06
CUX1-210ENST00000497815 SLFN5Q08AF3 891 aa15.43■□□□□ 0.06
CUX1-210ENST00000497815 VSIG10Q8N0Z9 540 aa15.43■□□□□ 0.06
CUX1-210ENST00000497815 TJP1Q07157 1748 aa15.43■□□□□ 0.06
CUX1-210ENST00000497815 RREB1Q92766 1687 aa15.42■□□□□ 0.06
CUX1-210ENST00000497815 GIGYF1O75420 1035 aaPredicted RBP15.42■□□□□ 0.06
CUX1-210ENST00000497815 C8orf58Q8NAV2 365 aa15.42■□□□□ 0.06
CUX1-210ENST00000497815 EXOSC9Q06265 439 aaKnown RBP15.41■□□□□ 0.06
CUX1-210ENST00000497815 DUSP27Q5VZP5 1158 aa15.41■□□□□ 0.06
CUX1-210ENST00000497815 USP16Q9Y5T5 823 aa15.41■□□□□ 0.06
CUX1-210ENST00000497815 C5P01031 1676 aa15.41■□□□□ 0.06
CUX1-210ENST00000497815 NUP188Q5SRE5 1749 aa15.4■□□□□ 0.06
CUX1-210ENST00000497815 EIF2S2P20042 333 aaKnown RBP15.4■□□□□ 0.06
CUX1-210ENST00000497815 TSPYL6Q8N831 410 aa15.4■□□□□ 0.06
CUX1-210ENST00000497815 NECTIN2Q92692 538 aa15.4■□□□□ 0.06
CUX1-210ENST00000497815 STARD3NLO95772 234 aa15.39■□□□□ 0.05
CUX1-210ENST00000497815 CYP19A1P11511 503 aaPredicted RBP15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms