RNA–Protein interactions for RNA: ENST00000497282.1

EFNA1-205, Transcript of ephrin A1, human

TSL 2

Gene EFNA1, Length 719 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
EFNA1-205	ENST00000497282	COL5A3	P25940	1745 aa	Predicted RBP	10.69	□□□□□ -0.7
EFNA1-205	ENST00000497282	KCP	Q6ZWJ8	1503 aa		10.68	□□□□□ -0.7
EFNA1-205	ENST00000497282	KCNQ4	P56696	695 aa		10.68	□□□□□ -0.7
EFNA1-205	ENST00000497282	CABP4	P57796	275 aa		10.68	□□□□□ -0.7
EFNA1-205	ENST00000497282	ANO8	Q9HCE9	1232 aa	Predicted RBP	10.68	□□□□□ -0.7
EFNA1-205	ENST00000497282	ASAP1	Q9ULH1	1129 aa		10.68	□□□□□ -0.7
EFNA1-205	ENST00000497282	KDM3B	Q7LBC6	1761 aa		10.67	□□□□□ -0.7
EFNA1-205	ENST00000497282	C4B	P0C0L5	1744 aa		10.67	□□□□□ -0.7
EFNA1-205	ENST00000497282	MAPK8IP3	Q9UPT6	1336 aa		10.67	□□□□□ -0.7
EFNA1-205	ENST00000497282	DCTN1	Q14203	1278 aa		10.67	□□□□□ -0.7
EFNA1-205	ENST00000497282	NFE2L2	Q16236	605 aa		10.67	□□□□□ -0.7
EFNA1-205	ENST00000497282	NFATC2IP	Q8NCF5	419 aa		10.67	□□□□□ -0.7
EFNA1-205	ENST00000497282	PNISR	Q8TF01	805 aa	Known RBP	10.67	□□□□□ -0.7
EFNA1-205	ENST00000497282	SLC52A2	Q9HAB3	445 aa		10.67	□□□□□ -0.7
EFNA1-205	ENST00000497282	ATG3	Q9NT62	314 aa		10.67	□□□□□ -0.7
EFNA1-205	ENST00000497282	CASZ1	Q86V15	1759 aa		10.67	□□□□□ -0.7
EFNA1-205	ENST00000497282	QSER1	Q2KHR3	1735 aa		10.67	□□□□□ -0.7
EFNA1-205	ENST00000497282	MCM10	Q7L590	875 aa		10.66	□□□□□ -0.7
EFNA1-205	ENST00000497282	RUNDC1	Q96C34	613 aa		10.66	□□□□□ -0.7
EFNA1-205	ENST00000497282	NEFM	P07197	916 aa		10.65	□□□□□ -0.7
EFNA1-205	ENST00000497282	TMPO	P42166	694 aa	Known RBP	10.65	□□□□□ -0.7
EFNA1-205	ENST00000497282	SLC27A3	Q5K4L6	730 aa		10.65	□□□□□ -0.7
EFNA1-205	ENST00000497282	DIEXF	Q68CQ4	756 aa	Known RBP	10.65	□□□□□ -0.7
EFNA1-205	ENST00000497282	SLC4A9	Q96Q91	983 aa		10.65	□□□□□ -0.7
EFNA1-205	ENST00000497282	PNN	Q9H307	717 aa	Known RBP	10.65	□□□□□ -0.7
EFNA1-205	ENST00000497282	CCNL1	Q9UK58	526 aa	Predicted RBP	10.65	□□□□□ -0.7
EFNA1-205	ENST00000497282	RRP7A	Q9Y3A4	280 aa	Known RBP	10.65	□□□□□ -0.7
EFNA1-205	ENST00000497282	UBR3	Q6ZT12	1888 aa		10.64	□□□□□ -0.71
EFNA1-205	ENST00000497282	HTATSF1	O43719	755 aa	Known RBP	10.64	□□□□□ -0.71
EFNA1-205	ENST00000497282	SLC39A6	Q13433	755 aa		10.64	□□□□□ -0.71
EFNA1-205	ENST00000497282	ITPK1	Q13572	414 aa		10.64	□□□□□ -0.71
EFNA1-205	ENST00000497282	ZNF827	Q17R98	1081 aa		10.64	□□□□□ -0.71
EFNA1-205	ENST00000497282	SMARCC1	Q92922	1105 aa	Predicted RBP	10.64	□□□□□ -0.71
EFNA1-205	ENST00000497282	THUMPD2	Q9BTF0	503 aa	Known RBP	10.64	□□□□□ -0.71
EFNA1-205	ENST00000497282	LOC102724428	A0A0B4J2F2	783 aa		10.63	□□□□□ -0.71
EFNA1-205	ENST00000497282	PSD	A5PKW4	1024 aa	Predicted RBP	10.63	□□□□□ -0.71
EFNA1-205	ENST00000497282	SIK1	P57059	783 aa		10.63	□□□□□ -0.71
EFNA1-205	ENST00000497282	TEF	Q10587	303 aa		10.63	□□□□□ -0.71
EFNA1-205	ENST00000497282	R3HDM1	Q15032	1099 aa	Known RBP	10.63	□□□□□ -0.71
EFNA1-205	ENST00000497282	RTF1	Q92541	710 aa	Known RBP	10.63	□□□□□ -0.71
EFNA1-205	ENST00000497282	SENP3-EIF4A1	A0A087X0R7	540 aa		10.62	□□□□□ -0.71
EFNA1-205	ENST00000497282	APAF1	O14727	1248 aa		10.62	□□□□□ -0.71
EFNA1-205	ENST00000497282	PTCD1	O75127	700 aa	Known RBP	10.62	□□□□□ -0.71
EFNA1-205	ENST00000497282	RIPK4	P57078	832 aa		10.62	□□□□□ -0.71
EFNA1-205	ENST00000497282	NEUROD2	Q15784	382 aa		10.62	□□□□□ -0.71
EFNA1-205	ENST00000497282	LINC00116	Q8NCU8	138 aa		10.62	□□□□□ -0.71
EFNA1-205	ENST00000497282	AKT1S1	Q96B36	256 aa		10.62	□□□□□ -0.71
EFNA1-205	ENST00000497282	RBM42	Q9BTD8	480 aa	Known RBP	10.62	□□□□□ -0.71
EFNA1-205	ENST00000497282	TRIM35	Q9UPQ4	493 aa		10.62	□□□□□ -0.71
EFNA1-205	ENST00000497282	LAMB4	A4D0S4	1761 aa		10.62	□□□□□ -0.71
EFNA1-205	ENST00000497282	C4A	P0C0L4	1744 aa		10.61	□□□□□ -0.71
EFNA1-205	ENST00000497282	KCNQ3	O43525	872 aa		10.61	□□□□□ -0.71
EFNA1-205	ENST00000497282	ATP6V1A	P38606	617 aa		10.61	□□□□□ -0.71
EFNA1-205	ENST00000497282	SLC15A2	Q16348	729 aa		10.61	□□□□□ -0.71
EFNA1-205	ENST00000497282	MIER1	Q8N108	512 aa		10.61	□□□□□ -0.71
EFNA1-205	ENST00000497282	PDGFD	Q9GZP0	370 aa	Predicted RBP	10.61	□□□□□ -0.71
EFNA1-205	ENST00000497282	MYH14	Q7Z406	1995 aa	Known RBP	10.61	□□□□□ -0.71
EFNA1-205	ENST00000497282	CCER2	I3L3R5	266 aa		10.6	□□□□□ -0.71
EFNA1-205	ENST00000497282	NBPF14	Q5TI25	921 aa		10.6	□□□□□ -0.71
EFNA1-205	ENST00000497282	ZNF790	Q6PG37	636 aa		10.6	□□□□□ -0.71
EFNA1-205	ENST00000497282	AMIGO3	Q86WK7	504 aa		10.6	□□□□□ -0.71
EFNA1-205	ENST00000497282	FAM9B	Q8IZU0	186 aa		10.6	□□□□□ -0.71
EFNA1-205	ENST00000497282	STK32B	Q9NY57	414 aa		10.6	□□□□□ -0.71
EFNA1-205	ENST00000497282	LRP5	O75197	1615 aa		10.59	□□□□□ -0.71
EFNA1-205	ENST00000497282	BTBD11	A6QL63	1104 aa		10.59	□□□□□ -0.71
EFNA1-205	ENST00000497282	ZNF496	Q96IT1	587 aa	Predicted RBP	10.59	□□□□□ -0.71
EFNA1-205	ENST00000497282	MIS18A	Q9NYP9	233 aa		10.59	□□□□□ -0.71
EFNA1-205	ENST00000497282	HEG1	Q9ULI3	1381 aa		10.59	□□□□□ -0.71
EFNA1-205	ENST00000497282	PNPLA7	Q6ZV29	1317 aa		10.58	□□□□□ -0.71
EFNA1-205	ENST00000497282	COL24A1	Q17RW2	1714 aa		10.58	□□□□□ -0.72
EFNA1-205	ENST00000497282	LMOD3	Q0VAK6	560 aa		10.58	□□□□□ -0.72
EFNA1-205	ENST00000497282	TAF7	Q15545	349 aa	Predicted RBP	10.58	□□□□□ -0.72
EFNA1-205	ENST00000497282	SMIM5	Q71RC9	77 aa		10.58	□□□□□ -0.72
EFNA1-205	ENST00000497282	DNAJC10	Q8IXB1	793 aa		10.58	□□□□□ -0.72
EFNA1-205	ENST00000497282	TTC5	Q8N0Z6	440 aa		10.58	□□□□□ -0.72
EFNA1-205	ENST00000497282	CNTNAP4	Q9C0A0	1308 aa		10.57	□□□□□ -0.72
EFNA1-205	ENST00000497282	PRAMEF22	A3QJZ6	481 aa		10.56	□□□□□ -0.72
EFNA1-205	ENST00000497282	VSIG10	Q8N0Z9	540 aa		10.56	□□□□□ -0.72
EFNA1-205	ENST00000497282	GNPAT	O15228	680 aa		10.55	□□□□□ -0.72
EFNA1-205	ENST00000497282	CYP19A1	P11511	503 aa	Predicted RBP	10.55	□□□□□ -0.72
EFNA1-205	ENST00000497282	CRKL	P46109	303 aa	Known RBP	10.55	□□□□□ -0.72
EFNA1-205	ENST00000497282	COL23A1	Q86Y22	540 aa	Predicted RBP	10.55	□□□□□ -0.72
EFNA1-205	ENST00000497282	AK7	Q96M32	723 aa		10.55	□□□□□ -0.72
EFNA1-205	ENST00000497282	FMNL2	Q96PY5	1086 aa		10.55	□□□□□ -0.72
EFNA1-205	ENST00000497282	TFCP2L1	Q9NZI6	479 aa		10.55	□□□□□ -0.72
EFNA1-205	ENST00000497282	SCN7A	Q01118	1682 aa		10.54	□□□□□ -0.72
EFNA1-205	ENST00000497282	PHF14	O94880	888 aa		10.54	□□□□□ -0.72
EFNA1-205	ENST00000497282	EIF4A1	P60842	406 aa	Known RBP	10.54	□□□□□ -0.72
EFNA1-205	ENST00000497282	CCDC27	Q2M243	656 aa		10.54	□□□□□ -0.72
EFNA1-205	ENST00000497282	RC3H1	Q5TC82	1133 aa	Known RBP	10.54	□□□□□ -0.72
EFNA1-205	ENST00000497282	INTS5	Q6P9B9	1019 aa	Known RBP	10.54	□□□□□ -0.72
EFNA1-205	ENST00000497282	WWC1	Q8IX03	1113 aa		10.54	□□□□□ -0.72
EFNA1-205	ENST00000497282	TSPYL4	Q9UJ04	414 aa		10.54	□□□□□ -0.72
EFNA1-205	ENST00000497282	ZBTB1	Q9Y2K1	713 aa		10.54	□□□□□ -0.72
EFNA1-205	ENST00000497282	BCOR	Q6W2J9	1755 aa		10.54	□□□□□ -0.72
EFNA1-205	ENST00000497282	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.53	□□□□□ -0.72
EFNA1-205	ENST00000497282	CHL1	O00533	1208 aa		10.53	□□□□□ -0.72
EFNA1-205	ENST00000497282	ZNF853	P0CG23	659 aa		10.53	□□□□□ -0.72
EFNA1-205	ENST00000497282	SSFA2	P28290	1259 aa		10.53	□□□□□ -0.72
EFNA1-205	ENST00000497282	KRT24	Q2M2I5	525 aa		10.53	□□□□□ -0.72

Retrieved 100 of 20,778 RNA–protein pairs in 90 ms