RNA–Protein interactions for RNA: ENST00000496711.5

GARNL3-220, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 1 (best)

Gene GARNL3, Length 1,859 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-220ENST00000496711 RBM25P49756 843 aaKnown RBP16.24■□□□□ 0.19
GARNL3-220ENST00000496711 AKAP4Q5JQC9 854 aa16.24■□□□□ 0.19
GARNL3-220ENST00000496711 KRT28Q7Z3Y7 464 aa16.24■□□□□ 0.19
GARNL3-220ENST00000496711 PLEKHM2Q8IWE5 1019 aa16.24■□□□□ 0.19
GARNL3-220ENST00000496711 PLEKHO1Q53GL0 409 aaPredicted RBP16.23■□□□□ 0.19
GARNL3-220ENST00000496711 LMOD2Q6P5Q4 547 aa16.23■□□□□ 0.19
GARNL3-220ENST00000496711 TUBGCP6Q96RT7 1819 aa16.23■□□□□ 0.19
GARNL3-220ENST00000496711 CDC45O75419 566 aa16.22■□□□□ 0.19
GARNL3-220ENST00000496711 AMOTQ4VCS5 1084 aa16.22■□□□□ 0.19
GARNL3-220ENST00000496711 HDGFL1Q5TGJ6 251 aa16.22■□□□□ 0.19
GARNL3-220ENST00000496711 ZNF530Q6P9A1 599 aaPredicted RBP16.22■□□□□ 0.19
GARNL3-220ENST00000496711 TBC1D9Q6ZT07 1266 aa16.22■□□□□ 0.19
GARNL3-220ENST00000496711 ANKRD24Q8TF21 1146 aa16.22■□□□□ 0.19
GARNL3-220ENST00000496711 NECTIN2Q92692 538 aa16.22■□□□□ 0.19
GARNL3-220ENST00000496711 GNAI2P04899 355 aa16.22■□□□□ 0.19
GARNL3-220ENST00000496711 GSPT1P15170 499 aaKnown RBP16.22■□□□□ 0.19
GARNL3-220ENST00000496711 TTC22Q5TAA0 569 aa16.22■□□□□ 0.19
GARNL3-220ENST00000496711 NCOA3Q9Y6Q9 1424 aa16.21■□□□□ 0.19
GARNL3-220ENST00000496711 GNAI3P08754 354 aa16.21■□□□□ 0.19
GARNL3-220ENST00000496711 HOXB7P09629 217 aa16.21■□□□□ 0.19
GARNL3-220ENST00000496711 SLKQ9H2G2 1235 aaPredicted RBP16.21■□□□□ 0.19
GARNL3-220ENST00000496711 TMEM94Q12767 1356 aa16.21■□□□□ 0.18
GARNL3-220ENST00000496711 ANTXR1Q9H6X2 564 aa16.2■□□□□ 0.18
GARNL3-220ENST00000496711 LGR6Q9HBX8 967 aa16.2■□□□□ 0.18
GARNL3-220ENST00000496711 COL18A1P39060 1754 aa16.2■□□□□ 0.18
GARNL3-220ENST00000496711 EIF5BO60841 1220 aaKnown RBP16.2■□□□□ 0.18
GARNL3-220ENST00000496711 EIF4A1P60842 406 aaKnown RBP16.2■□□□□ 0.18
GARNL3-220ENST00000496711 TEFQ10587 303 aa16.2■□□□□ 0.18
GARNL3-220ENST00000496711 SCN11AQ9UI33 1791 aa16.2■□□□□ 0.18
GARNL3-220ENST00000496711 PLEKHG5O94827 1062 aa16.19■□□□□ 0.18
GARNL3-220ENST00000496711 C1orf141Q5JVX7 400 aa16.19■□□□□ 0.18
GARNL3-220ENST00000496711 CHMP4AQ9BY43 222 aa16.19■□□□□ 0.18
GARNL3-220ENST00000496711 ABCC6O95255 1503 aa16.19■□□□□ 0.18
GARNL3-220ENST00000496711 XIRP1Q702N8 1843 aaKnown RBP16.19■□□□□ 0.18
GARNL3-220ENST00000496711 ATF3P18847 181 aa16.18■□□□□ 0.18
GARNL3-220ENST00000496711 HSCBQ8IWL3 235 aa16.18■□□□□ 0.18
GARNL3-220ENST00000496711 FRAT2O75474 233 aaPredicted RBP16.18■□□□□ 0.18
GARNL3-220ENST00000496711 C16orf71Q8IYS4 520 aaPredicted RBP16.18■□□□□ 0.18
GARNL3-220ENST00000496711 APBB1O00213 710 aa16.17■□□□□ 0.18
GARNL3-220ENST00000496711 RNMTO43148 476 aaKnown RBP16.17■□□□□ 0.18
GARNL3-220ENST00000496711 SMARCA5O60264 1052 aaPredicted RBP16.17■□□□□ 0.18
GARNL3-220ENST00000496711 MPRIPQ6WCQ1 1025 aa16.17■□□□□ 0.18
GARNL3-220ENST00000496711 ERBB3P21860 1342 aa16.17■□□□□ 0.18
GARNL3-220ENST00000496711 BTBD11A6QL63 1104 aa16.16■□□□□ 0.18
GARNL3-220ENST00000496711 OTUD7AQ8TE49 926 aaPredicted RBP16.16■□□□□ 0.18
GARNL3-220ENST00000496711 AXIN2Q9Y2T1 843 aa16.16■□□□□ 0.18
GARNL3-220ENST00000496711 SNX21Q969T3 373 aa16.16■□□□□ 0.18
GARNL3-220ENST00000496711 PHAXQ9H814 394 aaKnown RBP16.16■□□□□ 0.18
GARNL3-220ENST00000496711 TNS3Q68CZ2 1445 aa16.15■□□□□ 0.18
GARNL3-220ENST00000496711 BCL11AQ9H165 835 aa16.15■□□□□ 0.18
GARNL3-220ENST00000496711 EIF2S2P20042 333 aaKnown RBP16.14■□□□□ 0.17
GARNL3-220ENST00000496711 CHPF2Q9P2E5 772 aa16.14■□□□□ 0.17
GARNL3-220ENST00000496711 PKD1L3Q7Z443 1732 aa16.14■□□□□ 0.17
GARNL3-220ENST00000496711 KCNQ3O43525 872 aa16.14■□□□□ 0.17
GARNL3-220ENST00000496711 UBTFL1P0CB47 393 aaPredicted RBP16.14■□□□□ 0.17
GARNL3-220ENST00000496711 ATP8B2P98198 1209 aa16.14■□□□□ 0.17
GARNL3-220ENST00000496711 LRRFIP2Q9Y608 721 aaKnown RBP16.14■□□□□ 0.17
GARNL3-220ENST00000496711 C5P01031 1676 aa16.13■□□□□ 0.17
GARNL3-220ENST00000496711 KIF2CQ99661 725 aa16.13■□□□□ 0.17
GARNL3-220ENST00000496711 USP44Q9H0E7 712 aa16.13■□□□□ 0.17
GARNL3-220ENST00000496711 OSBPL3Q9H4L5 887 aa16.13■□□□□ 0.17
GARNL3-220ENST00000496711 EXOC6BQ9Y2D4 811 aa16.13■□□□□ 0.17
GARNL3-220ENST00000496711 NPHP3Q7Z494 1330 aa16.13■□□□□ 0.17
GARNL3-220ENST00000496711 IBTKQ9P2D0 1353 aaPredicted RBP16.13■□□□□ 0.17
GARNL3-220ENST00000496711 AK9Q5TCS8 1911 aa16.12■□□□□ 0.17
GARNL3-220ENST00000496711 PNMA6EA0A0J9YXQ4 647 aa16.12■□□□□ 0.17
GARNL3-220ENST00000496711 SDSP20132 328 aa16.12■□□□□ 0.17
GARNL3-220ENST00000496711 ZC3H6P61129 1189 aaKnown RBP16.12■□□□□ 0.17
GARNL3-220ENST00000496711 CASC1Q6TDU7 716 aa16.12■□□□□ 0.17
GARNL3-220ENST00000496711 SRCIN1Q9C0H9 1055 aa16.12■□□□□ 0.17
GARNL3-220ENST00000496711 DNAJC5Q9H3Z4 198 aa16.12■□□□□ 0.17
GARNL3-220ENST00000496711 HEG1Q9ULI3 1381 aa16.12■□□□□ 0.17
GARNL3-220ENST00000496711 CADPS2Q86UW7 1296 aa16.12■□□□□ 0.17
GARNL3-220ENST00000496711 LRRCC1Q9C099 1032 aa16.12■□□□□ 0.17
GARNL3-220ENST00000496711 PLEKHG2Q9H7P9 1386 aa16.11■□□□□ 0.17
GARNL3-220ENST00000496711 SPRYD3Q8NCJ5 442 aa16.11■□□□□ 0.17
GARNL3-220ENST00000496711 SALL3Q9BXA9 1300 aa16.1■□□□□ 0.17
GARNL3-220ENST00000496711 PDE1AP54750 535 aa16.1■□□□□ 0.17
GARNL3-220ENST00000496711 GSE1Q14687 1217 aa16.1■□□□□ 0.17
GARNL3-220ENST00000496711 DNAAF4Q8WXU2 420 aa16.1■□□□□ 0.17
GARNL3-220ENST00000496711 DBF4Q9UBU7 674 aaPredicted RBP16.1■□□□□ 0.17
GARNL3-220ENST00000496711 PARP4Q9UKK3 1724 aaKnown RBP16.1■□□□□ 0.17
GARNL3-220ENST00000496711 ADCY9O60503 1353 aa16.1■□□□□ 0.17
GARNL3-220ENST00000496711 RAPGEF4Q8WZA2 1011 aa16.1■□□□□ 0.17
GARNL3-220ENST00000496711 DDX17Q92841 729 aaKnown RBP16.1■□□□□ 0.17
GARNL3-220ENST00000496711 CHMP5Q9NZZ3 219 aa16.1■□□□□ 0.17
GARNL3-220ENST00000496711 MEGF6O75095 1541 aa16.09■□□□□ 0.17
GARNL3-220ENST00000496711 KDM6AO15550 1401 aaPredicted RBP16.09■□□□□ 0.17
GARNL3-220ENST00000496711 MRC1P22897 1456 aa16.08■□□□□ 0.17
GARNL3-220ENST00000496711 PI4KAP2A4QPH2 592 aa16.08■□□□□ 0.17
GARNL3-220ENST00000496711 GIGYF1O75420 1035 aaPredicted RBP16.08■□□□□ 0.17
GARNL3-220ENST00000496711 BEND3Q5T5X7 828 aa16.08■□□□□ 0.17
GARNL3-220ENST00000496711 PI4KAP1Q8N8J0 262 aa16.08■□□□□ 0.17
GARNL3-220ENST00000496711 SSH3Q8TE77 659 aa16.08■□□□□ 0.17
GARNL3-220ENST00000496711 NLRP2Q9NX02 1062 aa16.08■□□□□ 0.16
GARNL3-220ENST00000496711 STRCQ7RTU9 1775 aa16.07■□□□□ 0.16
GARNL3-220ENST00000496711 HSP90AB1P08238 724 aaKnown RBP16.07■□□□□ 0.16
GARNL3-220ENST00000496711 TATP17735 454 aaPredicted RBP16.07■□□□□ 0.16
GARNL3-220ENST00000496711 MX1P20591 662 aa16.07■□□□□ 0.16
GARNL3-220ENST00000496711 ABCA3Q99758 1704 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms