RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 TLR1Q15399 786 aa10.9□□□□□ -0.66
CCDC39-207ENST00000495817 SLC4A9Q96Q91 983 aa10.9□□□□□ -0.66
CCDC39-207ENST00000495817 ZSCAN10Q96SZ4 725 aaPredicted RBP10.9□□□□□ -0.66
CCDC39-207ENST00000495817 TERTO14746 1132 aaKnown RBP10.89□□□□□ -0.67
CCDC39-207ENST00000495817 ZNF775Q96BV0 537 aaPredicted RBP10.89□□□□□ -0.67
CCDC39-207ENST00000495817 STAU1O95793 577 aaKnown RBP10.88□□□□□ -0.67
CCDC39-207ENST00000495817 GNASQ5JWF2 1037 aa10.88□□□□□ -0.67
CCDC39-207ENST00000495817 KANK4Q5T7N3 995 aaPredicted RBP10.88□□□□□ -0.67
CCDC39-207ENST00000495817 PRICKLE2Q7Z3G6 844 aa10.88□□□□□ -0.67
CCDC39-207ENST00000495817 NBPF15Q8N660 670 aa10.88□□□□□ -0.67
CCDC39-207ENST00000495817 TPCN2Q8NHX9 752 aa10.88□□□□□ -0.67
CCDC39-207ENST00000495817 RBM19Q9Y4C8 960 aaKnown RBP10.88□□□□□ -0.67
CCDC39-207ENST00000495817 FAM196BA6NMK8 535 aa10.87□□□□□ -0.67
CCDC39-207ENST00000495817 M0R2N6 131 aa10.87□□□□□ -0.67
CCDC39-207ENST00000495817 RASA1P20936 1047 aa10.87□□□□□ -0.67
CCDC39-207ENST00000495817 SMTNP53814 917 aa10.87□□□□□ -0.67
CCDC39-207ENST00000495817 MTFR1Q15390 333 aa10.87□□□□□ -0.67
CCDC39-207ENST00000495817 CCDC102BQ68D86 513 aa10.87□□□□□ -0.67
CCDC39-207ENST00000495817 NBPF10Q6P3W6 841 aaKnown RBP10.87□□□□□ -0.67
CCDC39-207ENST00000495817 LARP1Q6PKG0 1096 aaKnown RBP10.87□□□□□ -0.67
CCDC39-207ENST00000495817 TAS1R3Q7RTX0 852 aa10.87□□□□□ -0.67
CCDC39-207ENST00000495817 SLC16A10Q8TF71 515 aa10.87□□□□□ -0.67
CCDC39-207ENST00000495817 VRTNQ9H8Y1 702 aa10.87□□□□□ -0.67
CCDC39-207ENST00000495817 KIAA1024Q9UPX6 916 aa10.87□□□□□ -0.67
CCDC39-207ENST00000495817 SLC35F4A4IF30 521 aa10.86□□□□□ -0.67
CCDC39-207ENST00000495817 H3BM21 787 aa10.86□□□□□ -0.67
CCDC39-207ENST00000495817 TMEM214Q6NUQ4 689 aaKnown RBP10.86□□□□□ -0.67
CCDC39-207ENST00000495817 PPARGC1BQ86YN6 1023 aaKnown RBP10.86□□□□□ -0.67
CCDC39-207ENST00000495817 RHBDD1Q8TEB9 315 aa10.86□□□□□ -0.67
CCDC39-207ENST00000495817 ZNF358Q9NW07 568 aa10.86□□□□□ -0.67
CCDC39-207ENST00000495817 ZBTB7BO15156 539 aaPredicted RBP10.85□□□□□ -0.67
CCDC39-207ENST00000495817 CCDC155Q8N6L0 562 aa10.85□□□□□ -0.67
CCDC39-207ENST00000495817 DYRK1BQ9Y463 629 aa10.85□□□□□ -0.67
CCDC39-207ENST00000495817 SENP3-EIF4A1A0A087X0R7 540 aa10.84□□□□□ -0.67
CCDC39-207ENST00000495817 A6NJY4 79 aa10.84□□□□□ -0.67
CCDC39-207ENST00000495817 NFX1Q12986 1120 aaKnown RBP10.84□□□□□ -0.67
CCDC39-207ENST00000495817 ZNF594Q96JF6 807 aaPredicted RBP10.84□□□□□ -0.67
CCDC39-207ENST00000495817 SERTAD1Q9UHV2 236 aa10.84□□□□□ -0.67
CCDC39-207ENST00000495817 USP17L15C9J2P7 530 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 USP17L10C9JJH3 530 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 USP17L13C9JLJ4 530 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 USP17L12C9JPN9 530 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 USP17L11C9JVI0 530 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 USP17L21D6R901 530 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 USP17L18D6R9N7 530 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 USP17L22D6RA61 530 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 USP17L17D6RBQ6 530 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 USP17L19D6RCP7 530 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 USP17L20D6RJB6 530 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 CDK2AP1O14519 115 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 PPFIA3O75145 1194 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 USP17L24Q0WX57 530 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 POU4F2Q12837 409 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 PTK7Q13308 1070 aa10.83□□□□□ -0.68
CCDC39-207ENST00000495817 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.83□□□□□ -0.68
CCDC39-207ENST00000495817 WFS1O76024 890 aa10.82□□□□□ -0.68
CCDC39-207ENST00000495817 VSIG8P0DPA2 414 aa10.82□□□□□ -0.68
CCDC39-207ENST00000495817 RHOQP17081 205 aa10.82□□□□□ -0.68
CCDC39-207ENST00000495817 CRTC2Q53ET0 693 aaPredicted RBP10.82□□□□□ -0.68
CCDC39-207ENST00000495817 TREML4Q6UXN2 200 aa10.82□□□□□ -0.68
CCDC39-207ENST00000495817 A0A1B0GTH6 734 aa10.81□□□□□ -0.68
CCDC39-207ENST00000495817 DKK1O94907 266 aa10.81□□□□□ -0.68
CCDC39-207ENST00000495817 ITGA6P23229 1130 aa10.81□□□□□ -0.68
CCDC39-207ENST00000495817 EPHA4P54764 986 aa10.81□□□□□ -0.68
CCDC39-207ENST00000495817 SEC13P55735 322 aa10.81□□□□□ -0.68
CCDC39-207ENST00000495817 IRF7Q92985 503 aa10.81□□□□□ -0.68
CCDC39-207ENST00000495817 NIFKQ9BYG3 293 aaKnown RBP10.81□□□□□ -0.68
CCDC39-207ENST00000495817 TIMMDC1Q9NPL8 285 aa10.81□□□□□ -0.68
CCDC39-207ENST00000495817 SCHIP1Q9P0W5 487 aaPredicted RBP10.81□□□□□ -0.68
CCDC39-207ENST00000495817 IQSEC3Q9UPP2 1182 aaPredicted RBP10.81□□□□□ -0.68
CCDC39-207ENST00000495817 C4orf17Q53FE4 359 aa10.8□□□□□ -0.68
CCDC39-207ENST00000495817 GMCL1Q96IK5 515 aa10.8□□□□□ -0.68
CCDC39-207ENST00000495817 RFX1P22670 979 aa10.79□□□□□ -0.68
CCDC39-207ENST00000495817 FOXK2Q01167 660 aa10.79□□□□□ -0.68
CCDC39-207ENST00000495817 ANKMY2Q8IV38 441 aa10.79□□□□□ -0.68
CCDC39-207ENST00000495817 NANOS1Q8WY41 292 aaKnown RBP10.79□□□□□ -0.68
CCDC39-207ENST00000495817 PBXIP1Q96AQ6 731 aa10.79□□□□□ -0.68
CCDC39-207ENST00000495817 ZNF295-AS1Q8N0V1 137 aa10.78□□□□□ -0.68
CCDC39-207ENST00000495817 VEGFBP49765 207 aa10.77□□□□□ -0.69
CCDC39-207ENST00000495817 SRPK2P78362 688 aaKnown RBP10.77□□□□□ -0.69
CCDC39-207ENST00000495817 ELOAQ14241 798 aaKnown RBP10.77□□□□□ -0.69
CCDC39-207ENST00000495817 LCE2AQ5TA79 106 aaPredicted RBP10.77□□□□□ -0.69
CCDC39-207ENST00000495817 C1orf216Q8TAB5 229 aa10.77□□□□□ -0.69
CCDC39-207ENST00000495817 SFI1A8K8P3 1242 aa10.76□□□□□ -0.69
CCDC39-207ENST00000495817 H7C1W4 665 aa10.76□□□□□ -0.69
CCDC39-207ENST00000495817 PPP1R15AO75807 674 aaPredicted RBP10.76□□□□□ -0.69
CCDC39-207ENST00000495817 F11P03951 625 aa10.76□□□□□ -0.69
CCDC39-207ENST00000495817 DPYDQ12882 1025 aa10.76□□□□□ -0.69
CCDC39-207ENST00000495817 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.75□□□□□ -0.69
CCDC39-207ENST00000495817 PDIA4P13667 645 aaKnown RBP10.75□□□□□ -0.69
CCDC39-207ENST00000495817 PLA2G4AP47712 749 aa10.75□□□□□ -0.69
CCDC39-207ENST00000495817 NBPF1Q3BBV0 1214 aa10.75□□□□□ -0.69
CCDC39-207ENST00000495817 SLC9A9Q8IVB4 645 aa10.75□□□□□ -0.69
CCDC39-207ENST00000495817 TRIM22Q8IYM9 498 aa10.75□□□□□ -0.69
CCDC39-207ENST00000495817 TNS4Q8IZW8 715 aa10.75□□□□□ -0.69
CCDC39-207ENST00000495817 ATG7O95352 703 aa10.74□□□□□ -0.69
CCDC39-207ENST00000495817 PHKA2P46019 1235 aa10.74□□□□□ -0.69
CCDC39-207ENST00000495817 PSMA6P60900 246 aaKnown RBP10.74□□□□□ -0.69
CCDC39-207ENST00000495817 LBRQ14739 615 aaKnown RBP10.74□□□□□ -0.69
CCDC39-207ENST00000495817 TEAD4Q15561 434 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms