RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 MAFBQ9Y5Q3 323 aaPredicted RBP10.84□□□□□ -0.67
VIM-207ENST00000495528 UGGT2Q9NYU1 1516 aa10.84□□□□□ -0.67
VIM-207ENST00000495528 ADGRL1O94910 1474 aa10.83□□□□□ -0.68
VIM-207ENST00000495528 USP17L3A6NCW0 530 aa10.83□□□□□ -0.68
VIM-207ENST00000495528 USP17L4A6NCW7 530 aa10.83□□□□□ -0.68
VIM-207ENST00000495528 CFAP70Q5T0N1 1121 aa10.83□□□□□ -0.68
VIM-207ENST00000495528 USP17L2Q6R6M4 530 aa10.83□□□□□ -0.68
VIM-207ENST00000495528 USP17L1Q7RTZ2 530 aa10.83□□□□□ -0.68
VIM-207ENST00000495528 CCDC125Q86Z20 511 aa10.83□□□□□ -0.68
VIM-207ENST00000495528 CAPN5O15484 640 aaPredicted RBP10.82□□□□□ -0.68
VIM-207ENST00000495528 EML3Q32P44 896 aa10.82□□□□□ -0.68
VIM-207ENST00000495528 CC2D2BQ6DHV5 1058 aa10.82□□□□□ -0.68
VIM-207ENST00000495528 LILRA1O75019 489 aa10.81□□□□□ -0.68
VIM-207ENST00000495528 MYCP01106 439 aaPredicted RBP10.81□□□□□ -0.68
VIM-207ENST00000495528 ADD1P35611 737 aaKnown RBP10.81□□□□□ -0.68
VIM-207ENST00000495528 USP4Q13107 963 aa10.81□□□□□ -0.68
VIM-207ENST00000495528 CDCA8Q53HL2 280 aa10.81□□□□□ -0.68
VIM-207ENST00000495528 ERVK-9P63128 1117 aa10.8□□□□□ -0.68
VIM-207ENST00000495528 TEX14Q8IWB6 1497 aa10.8□□□□□ -0.68
VIM-207ENST00000495528 KIAA0556O60303 1618 aa10.8□□□□□ -0.68
VIM-207ENST00000495528 ST8SIA5O15466 376 aa10.79□□□□□ -0.68
VIM-207ENST00000495528 AVPP01185 164 aa10.79□□□□□ -0.68
VIM-207ENST00000495528 Q6ZNB5 142 aa10.79□□□□□ -0.68
VIM-207ENST00000495528 AGBL1Q96MI9 1066 aa10.79□□□□□ -0.68
VIM-207ENST00000495528 ZCCHC11Q5TAX3 1644 aaKnown RBP10.79□□□□□ -0.68
VIM-207ENST00000495528 MAP3K4Q9Y6R4 1608 aa10.79□□□□□ -0.68
VIM-207ENST00000495528 AXIN1O15169 862 aa10.78□□□□□ -0.68
VIM-207ENST00000495528 PLEKHM2Q8IWE5 1019 aa10.78□□□□□ -0.68
VIM-207ENST00000495528 MKRN1Q9UHC7 482 aaKnown RBP10.78□□□□□ -0.68
VIM-207ENST00000495528 NOD1Q9Y239 953 aa10.78□□□□□ -0.68
VIM-207ENST00000495528 WDR7Q9Y4E6 1490 aa10.78□□□□□ -0.68
VIM-207ENST00000495528 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.77□□□□□ -0.69
VIM-207ENST00000495528 SIRT1Q96EB6 747 aa10.77□□□□□ -0.69
VIM-207ENST00000495528 OSBPL3Q9H4L5 887 aa10.77□□□□□ -0.69
VIM-207ENST00000495528 CD109Q6YHK3 1445 aa10.76□□□□□ -0.69
VIM-207ENST00000495528 LZTS3O60299 673 aaPredicted RBP10.76□□□□□ -0.69
VIM-207ENST00000495528 RELBQ01201 579 aa10.76□□□□□ -0.69
VIM-207ENST00000495528 TRIM52Q96A61 297 aa10.76□□□□□ -0.69
VIM-207ENST00000495528 BMP1P13497 986 aa10.75□□□□□ -0.69
VIM-207ENST00000495528 VRTNQ9H8Y1 702 aa10.75□□□□□ -0.69
VIM-207ENST00000495528 LCE2BO14633 110 aa10.74□□□□□ -0.69
VIM-207ENST00000495528 STAU1O95793 577 aaKnown RBP10.74□□□□□ -0.69
VIM-207ENST00000495528 ADH1AP07327 375 aa10.74□□□□□ -0.69
VIM-207ENST00000495528 GTF2IP78347 998 aa10.74□□□□□ -0.69
VIM-207ENST00000495528 PSME1Q06323 249 aa10.74□□□□□ -0.69
VIM-207ENST00000495528 CTC1Q2NKJ3 1217 aa10.74□□□□□ -0.69
VIM-207ENST00000495528 KANK4Q5T7N3 995 aaPredicted RBP10.74□□□□□ -0.69
VIM-207ENST00000495528 Q6ZVU0 165 aa10.74□□□□□ -0.69
VIM-207ENST00000495528 ZNF395Q9H8N7 513 aaPredicted RBP10.74□□□□□ -0.69
VIM-207ENST00000495528 AAASQ9NRG9 546 aa10.74□□□□□ -0.69
VIM-207ENST00000495528 MAGI3Q5TCQ9 1506 aa10.74□□□□□ -0.69
VIM-207ENST00000495528 ATP5J2-PTCD1G3V325 749 aa10.73□□□□□ -0.69
VIM-207ENST00000495528 C6orf118Q5T5N4 469 aa10.73□□□□□ -0.69
VIM-207ENST00000495528 CYP2U1Q7Z449 544 aa10.73□□□□□ -0.69
VIM-207ENST00000495528 MEIOBQ8N635 442 aa10.73□□□□□ -0.69
VIM-207ENST00000495528 RAB6BQ9NRW1 208 aa10.73□□□□□ -0.69
VIM-207ENST00000495528 DACH1Q9UI36 760 aa10.73□□□□□ -0.69
VIM-207ENST00000495528 GOLGA3Q08378 1498 aa10.73□□□□□ -0.69
VIM-207ENST00000495528 RASA1P20936 1047 aa10.72□□□□□ -0.69
VIM-207ENST00000495528 SMCPP49901 116 aaPredicted RBP10.72□□□□□ -0.69
VIM-207ENST00000495528 TRIM50Q86XT4 487 aa10.72□□□□□ -0.69
VIM-207ENST00000495528 OGFOD1Q8N543 542 aa10.72□□□□□ -0.69
VIM-207ENST00000495528 ABCA8O94911 1581 aa10.72□□□□□ -0.69
VIM-207ENST00000495528 UPP2O95045 317 aa10.71□□□□□ -0.69
VIM-207ENST00000495528 CLDN10P78369 228 aa10.71□□□□□ -0.69
VIM-207ENST00000495528 KDF1Q8NAX2 398 aaPredicted RBP10.71□□□□□ -0.69
VIM-207ENST00000495528 ZNF594Q96JF6 807 aaPredicted RBP10.71□□□□□ -0.69
VIM-207ENST00000495528 PRXQ9BXM0 1461 aa10.71□□□□□ -0.69
VIM-207ENST00000495528 ARHGEF10LQ9HCE6 1279 aa10.71□□□□□ -0.69
VIM-207ENST00000495528 DNAAF2Q9NVR5 837 aaKnown RBP10.71□□□□□ -0.69
VIM-207ENST00000495528 PCDHGA11Q9Y5H2 935 aa10.71□□□□□ -0.69
VIM-207ENST00000495528 HECW2Q9P2P5 1572 aa10.7□□□□□ -0.7
VIM-207ENST00000495528 BMP2P12643 396 aa10.7□□□□□ -0.7
VIM-207ENST00000495528 MRPL14Q6P1L8 145 aaKnown RBP10.7□□□□□ -0.7
VIM-207ENST00000495528 LARP1Q6PKG0 1096 aaKnown RBP10.7□□□□□ -0.7
VIM-207ENST00000495528 LINC00528Q8N1L1 170 aa10.7□□□□□ -0.7
VIM-207ENST00000495528 CRIPAKQ8N1N5 446 aa10.7□□□□□ -0.7
VIM-207ENST00000495528 PBXIP1Q96AQ6 731 aa10.7□□□□□ -0.7
VIM-207ENST00000495528 PURBQ96QR8 312 aaKnown RBP10.7□□□□□ -0.7
VIM-207ENST00000495528 KIAA1024Q9UPX6 916 aa10.7□□□□□ -0.7
VIM-207ENST00000495528 PTGIRP43119 386 aa10.69□□□□□ -0.7
VIM-207ENST00000495528 ATP1A2P50993 1020 aa10.69□□□□□ -0.7
VIM-207ENST00000495528 CRTC2Q53ET0 693 aaPredicted RBP10.69□□□□□ -0.7
VIM-207ENST00000495528 TRIM46Q7Z4K8 759 aa10.69□□□□□ -0.7
VIM-207ENST00000495528 TSEN34Q9BSV6 310 aaKnown RBP10.69□□□□□ -0.7
VIM-207ENST00000495528 ATP10BO94823 1461 aa10.68□□□□□ -0.7
VIM-207ENST00000495528 MEN1O00255 615 aa10.68□□□□□ -0.7
VIM-207ENST00000495528 SCARF1Q14162 830 aa10.68□□□□□ -0.7
VIM-207ENST00000495528 FAM9AQ8IZU1 332 aaPredicted RBP10.68□□□□□ -0.7
VIM-207ENST00000495528 A0A1W2PRU2 124 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 USP17L15C9J2P7 530 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 USP17L10C9JJH3 530 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 USP17L13C9JLJ4 530 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 USP17L12C9JPN9 530 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 USP17L11C9JVI0 530 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 USP17L21D6R901 530 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 USP17L18D6R9N7 530 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 USP17L22D6RA61 530 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 USP17L17D6RBQ6 530 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 USP17L19D6RCP7 530 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms