RNA–Protein interactions for RNA: ENST00000493853.1

RBM39-238, Transcript of RNA binding motif protein 39, human

TSL 4

Gene RBM39, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-238	ENST00000493853	OSBP	P22059	807 aa		10.73	□□□□□ -0.69
RBM39-238	ENST00000493853	DEFB132	Q7Z7B7	95 aa		10.73	□□□□□ -0.69
RBM39-238	ENST00000493853	GLI3	P10071	1580 aa		10.73	□□□□□ -0.69
RBM39-238	ENST00000493853	GC	P02774	474 aa		10.72	□□□□□ -0.69
RBM39-238	ENST00000493853	PRIM1	P49642	420 aa	Known RBP	10.72	□□□□□ -0.69
RBM39-238	ENST00000493853	ROCK2	O75116	1388 aa	Known RBP	10.72	□□□□□ -0.69
RBM39-238	ENST00000493853	PPIP5K1	Q6PFW1	1433 aa		10.72	□□□□□ -0.69
RBM39-238	ENST00000493853	MARF1	Q9Y4F3	1742 aa	Known RBP	10.72	□□□□□ -0.69
RBM39-238	ENST00000493853	PDE3B	Q13370	1112 aa		10.71	□□□□□ -0.69
RBM39-238	ENST00000493853	FAM182B	Q5T319	152 aa		10.71	□□□□□ -0.69
RBM39-238	ENST00000493853	KIAA1468	Q9P260	1216 aa		10.71	□□□□□ -0.69
RBM39-238	ENST00000493853	HCST	Q9UBK5	93 aa		10.71	□□□□□ -0.69
RBM39-238	ENST00000493853	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	10.7	□□□□□ -0.7
RBM39-238	ENST00000493853	SPATA31A1	Q5TZJ5	1347 aa		10.7	□□□□□ -0.7
RBM39-238	ENST00000493853	TRIM6-TRIM34	B2RNG4	842 aa		10.7	□□□□□ -0.7
RBM39-238	ENST00000493853	MLLT3	P42568	568 aa	Predicted RBP	10.7	□□□□□ -0.7
RBM39-238	ENST00000493853	BRD4	O60885	1362 aa	Predicted RBP	10.69	□□□□□ -0.7
RBM39-238	ENST00000493853	FAM196A	Q6ZSG2	479 aa		10.69	□□□□□ -0.7
RBM39-238	ENST00000493853	ARHGEF28	Q8N1W1	1705 aa	Known RBP	10.69	□□□□□ -0.7
RBM39-238	ENST00000493853	TRPM3	Q9HCF6	1732 aa	Predicted RBP	10.68	□□□□□ -0.7
RBM39-238	ENST00000493853	NWD2	Q9ULI1	1742 aa		10.68	□□□□□ -0.7
RBM39-238	ENST00000493853	LARP1	Q6PKG0	1096 aa	Known RBP	10.68	□□□□□ -0.7
RBM39-238	ENST00000493853	TCP11L2	Q8N4U5	519 aa		10.68	□□□□□ -0.7
RBM39-238	ENST00000493853	WNT2B	Q93097	391 aa		10.68	□□□□□ -0.7
RBM39-238	ENST00000493853	CARD11	Q9BXL7	1154 aa		10.68	□□□□□ -0.7
RBM39-238	ENST00000493853	COL14A1	Q05707	1796 aa	Known RBP	10.67	□□□□□ -0.7
RBM39-238	ENST00000493853	KIAA1210	Q9ULL0	1709 aa		10.67	□□□□□ -0.7
RBM39-238	ENST00000493853	PLCH1	Q4KWH8	1693 aa		10.67	□□□□□ -0.7
RBM39-238	ENST00000493853	ALS2	Q96Q42	1657 aa		10.67	□□□□□ -0.7
RBM39-238	ENST00000493853	USP19	O94966	1318 aa		10.67	□□□□□ -0.7
RBM39-238	ENST00000493853	BARGIN	Q6ZT62	677 aa		10.67	□□□□□ -0.7
RBM39-238	ENST00000493853	THRAP3	Q9Y2W1	955 aa	Known RBP	10.67	□□□□□ -0.7
RBM39-238	ENST00000493853	CPD	O75976	1380 aa		10.66	□□□□□ -0.7
RBM39-238	ENST00000493853	TONSL	Q96HA7	1378 aa		10.66	□□□□□ -0.7
RBM39-238	ENST00000493853	TRIM37	O94972	964 aa		10.66	□□□□□ -0.7
RBM39-238	ENST00000493853	PTPN5	P54829	565 aa		10.66	□□□□□ -0.7
RBM39-238	ENST00000493853	PACS2	Q86VP3	889 aa		10.66	□□□□□ -0.7
RBM39-238	ENST00000493853	CDHR5	Q9HBB8	845 aa		10.66	□□□□□ -0.7
RBM39-238	ENST00000493853	ITSN1	Q15811	1721 aa		10.66	□□□□□ -0.7
RBM39-238	ENST00000493853	SEMA3E	O15041	775 aa		10.65	□□□□□ -0.7
RBM39-238	ENST00000493853	APBA3	O96018	575 aa		10.65	□□□□□ -0.7
RBM39-238	ENST00000493853	PRSS12	P56730	875 aa		10.65	□□□□□ -0.7
RBM39-238	ENST00000493853	TOM1L2	Q6ZVM7	507 aa		10.65	□□□□□ -0.7
RBM39-238	ENST00000493853	KCNH5	Q8NCM2	988 aa		10.65	□□□□□ -0.7
RBM39-238	ENST00000493853	TMC1	Q8TDI8	760 aa		10.65	□□□□□ -0.7
RBM39-238	ENST00000493853	CDCA7L	Q96GN5	454 aa		10.65	□□□□□ -0.7
RBM39-238	ENST00000493853	USP6	P35125	1406 aa		10.65	□□□□□ -0.7
RBM39-238	ENST00000493853	SSH2	Q76I76	1423 aa		10.65	□□□□□ -0.7
RBM39-238	ENST00000493853	TTC21B	Q7Z4L5	1316 aa		10.64	□□□□□ -0.71
RBM39-238	ENST00000493853	EP400	Q96L91	3159 aa		10.64	□□□□□ -0.71
RBM39-238	ENST00000493853	C11orf95	C9JLR9	678 aa	Predicted RBP	10.64	□□□□□ -0.71
RBM39-238	ENST00000493853	CSB-PGBD3	P0DP91	1061 aa		10.64	□□□□□ -0.71
RBM39-238	ENST00000493853	LAPTM4B	Q86VI4	370 aa		10.64	□□□□□ -0.71
RBM39-238	ENST00000493853	SEPT9	Q9UHD8	586 aa	Predicted RBP	10.64	□□□□□ -0.71
RBM39-238	ENST00000493853	TSKS	Q9UJT2	592 aa		10.64	□□□□□ -0.71
RBM39-238	ENST00000493853	ABCA3	Q99758	1704 aa		10.64	□□□□□ -0.71
RBM39-238	ENST00000493853	TTC21A	Q8NDW8	1320 aa		10.63	□□□□□ -0.71
RBM39-238	ENST00000493853	TRIM26	Q12899	539 aa	Predicted RBP	10.63	□□□□□ -0.71
RBM39-238	ENST00000493853	THSD4	Q6ZMP0	1018 aa		10.63	□□□□□ -0.71
RBM39-238	ENST00000493853	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	10.63	□□□□□ -0.71
RBM39-238	ENST00000493853	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	10.63	□□□□□ -0.71
RBM39-238	ENST00000493853	VSIG10	Q8N0Z9	540 aa		10.63	□□□□□ -0.71
RBM39-238	ENST00000493853	AATK	Q6ZMQ8	1374 aa		10.63	□□□□□ -0.71
RBM39-238	ENST00000493853	KTN1	Q86UP2	1357 aa	Known RBP	10.63	□□□□□ -0.71
RBM39-238	ENST00000493853	EZH2	Q15910	746 aa	Known RBP	10.62	□□□□□ -0.71
RBM39-238	ENST00000493853	ANKK1	Q8NFD2	765 aa		10.62	□□□□□ -0.71
RBM39-238	ENST00000493853	CAMTA1	Q9Y6Y1	1673 aa		10.61	□□□□□ -0.71
RBM39-238	ENST00000493853	R3HDM1	Q15032	1099 aa	Known RBP	10.61	□□□□□ -0.71
RBM39-238	ENST00000493853	DDB1	Q16531	1140 aa		10.61	□□□□□ -0.71
RBM39-238	ENST00000493853	ARHGEF25	Q86VW2	580 aa		10.61	□□□□□ -0.71
RBM39-238	ENST00000493853	TERF2IP	Q9NYB0	399 aa		10.61	□□□□□ -0.71
RBM39-238	ENST00000493853	NRAP	Q86VF7	1730 aa		10.61	□□□□□ -0.71
RBM39-238	ENST00000493853	CRB1	P82279	1406 aa		10.6	□□□□□ -0.71
RBM39-238	ENST00000493853	NBPF14	Q5TI25	921 aa		10.6	□□□□□ -0.71
RBM39-238	ENST00000493853	ZFR	Q96KR1	1074 aa	Known RBP	10.6	□□□□□ -0.71
RBM39-238	ENST00000493853	CAMKK2	Q96RR4	588 aa		10.6	□□□□□ -0.71
RBM39-238	ENST00000493853	CDCA7	Q9BWT1	371 aa	Predicted RBP	10.6	□□□□□ -0.71
RBM39-238	ENST00000493853	TOPAZ1	Q8N9V7	1692 aa		10.6	□□□□□ -0.71
RBM39-238	ENST00000493853	BRWD3	Q6RI45	1802 aa		10.59	□□□□□ -0.71
RBM39-238	ENST00000493853	SLC12A5	Q9H2X9	1139 aa		10.59	□□□□□ -0.71
RBM39-238	ENST00000493853	QRICH2	Q9H0J4	1663 aa		10.59	□□□□□ -0.71
RBM39-238	ENST00000493853	WDR17	Q8IZU2	1322 aa		10.58	□□□□□ -0.71
RBM39-238	ENST00000493853	PHRF1	Q9P1Y6	1649 aa	Known RBP	10.58	□□□□□ -0.72
RBM39-238	ENST00000493853	NRK	Q7Z2Y5	1582 aa		10.58	□□□□□ -0.72
RBM39-238	ENST00000493853	COL5A2	P05997	1499 aa	Predicted RBP	10.58	□□□□□ -0.72
RBM39-238	ENST00000493853	SBNO2	Q9Y2G9	1366 aa		10.58	□□□□□ -0.72
RBM39-238	ENST00000493853	EXOC5	O00471	708 aa		10.58	□□□□□ -0.72
RBM39-238	ENST00000493853	FAM198A	Q9UFP1	575 aa		10.58	□□□□□ -0.72
RBM39-238	ENST00000493853	TRPM1	Q7Z4N2	1603 aa		10.58	□□□□□ -0.72
RBM39-238	ENST00000493853	SRCAP	Q6ZRS2	3230 aa		10.57	□□□□□ -0.72
RBM39-238	ENST00000493853	PARD3	Q8TEW0	1356 aa		10.57	□□□□□ -0.72
RBM39-238	ENST00000493853	SMAP	O00193	183 aa		10.57	□□□□□ -0.72
RBM39-238	ENST00000493853	NME9	Q86XW9	330 aa		10.57	□□□□□ -0.72
RBM39-238	ENST00000493853	PUS7	Q96PZ0	661 aa	Known RBP	10.57	□□□□□ -0.72
RBM39-238	ENST00000493853	CARD10	Q9BWT7	1032 aa		10.57	□□□□□ -0.72
RBM39-238	ENST00000493853	NPDC1	Q9NQX5	325 aa	Predicted RBP	10.57	□□□□□ -0.72
RBM39-238	ENST00000493853	NLRP2	Q9NX02	1062 aa		10.57	□□□□□ -0.72
RBM39-238	ENST00000493853	PNMA3	Q9UL41	463 aa		10.57	□□□□□ -0.72
RBM39-238	ENST00000493853	CRYBG1	Q9Y4K1	1723 aa		10.57	□□□□□ -0.72
RBM39-238	ENST00000493853	CPSF1	Q10570	1443 aa	Known RBP	10.57	□□□□□ -0.72

Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms