RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 GIGYF1O75420 1035 aaPredicted RBP12.49□□□□□ -0.41
HDAC3-212ENST00000492407 TNNT2P45379 298 aaPredicted RBP12.49□□□□□ -0.41
HDAC3-212ENST00000492407 MORC1Q86VD1 984 aa12.49□□□□□ -0.41
HDAC3-212ENST00000492407 NLGN1Q8N2Q7 840 aa12.49□□□□□ -0.41
HDAC3-212ENST00000492407 POLR3GLQ9BT43 218 aa12.49□□□□□ -0.41
HDAC3-212ENST00000492407 MAP2P11137 1827 aaKnown RBP12.48□□□□□ -0.41
HDAC3-212ENST00000492407 TAF1LQ8IZX4 1826 aa12.48□□□□□ -0.41
HDAC3-212ENST00000492407 ITPK1Q13572 414 aa12.48□□□□□ -0.41
HDAC3-212ENST00000492407 TRAPPC3LQ5T215 181 aa12.48□□□□□ -0.41
HDAC3-212ENST00000492407 AMIGO3Q86WK7 504 aa12.48□□□□□ -0.41
HDAC3-212ENST00000492407 KNSTRNQ9Y448 316 aa12.48□□□□□ -0.41
HDAC3-212ENST00000492407 ITGB4P16144 1822 aa12.48□□□□□ -0.41
HDAC3-212ENST00000492407 KDRP35968 1356 aa12.47□□□□□ -0.41
HDAC3-212ENST00000492407 GNPATO15228 680 aa12.47□□□□□ -0.41
HDAC3-212ENST00000492407 PHF14O94880 888 aa12.47□□□□□ -0.41
HDAC3-212ENST00000492407 RTCBQ9Y3I0 505 aaKnown RBP12.47□□□□□ -0.41
HDAC3-212ENST00000492407 ZNF831Q5JPB2 1677 aa12.47□□□□□ -0.41
HDAC3-212ENST00000492407 CNTNAP4Q9C0A0 1308 aa12.46□□□□□ -0.41
HDAC3-212ENST00000492407 TGFB2P61812 414 aa12.46□□□□□ -0.41
HDAC3-212ENST00000492407 ZNF530Q6P9A1 599 aaPredicted RBP12.46□□□□□ -0.41
HDAC3-212ENST00000492407 RPS6KA4O75676 772 aa12.45□□□□□ -0.42
HDAC3-212ENST00000492407 MTHFSP49914 203 aa12.45□□□□□ -0.42
HDAC3-212ENST00000492407 CABP4P57796 275 aa12.45□□□□□ -0.42
HDAC3-212ENST00000492407 C1orf141Q5JVX7 400 aa12.45□□□□□ -0.42
HDAC3-212ENST00000492407 CCER1Q8TC90 406 aaPredicted RBP12.45□□□□□ -0.42
HDAC3-212ENST00000492407 UBR3Q6ZT12 1888 aa12.44□□□□□ -0.42
HDAC3-212ENST00000492407 GOLGB1Q14789 3259 aaKnown RBP12.44□□□□□ -0.42
HDAC3-212ENST00000492407 IL13P35225 146 aa12.44□□□□□ -0.42
HDAC3-212ENST00000492407 SLC4A9Q96Q91 983 aa12.44□□□□□ -0.42
HDAC3-212ENST00000492407 SENP3-EIF4A1A0A087X0R7 540 aa12.43□□□□□ -0.42
HDAC3-212ENST00000492407 MMP10P09238 476 aa12.43□□□□□ -0.42
HDAC3-212ENST00000492407 AMER1Q5JTC6 1135 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-212ENST00000492407 ARHGEF1Q92888 912 aaKnown RBP12.43□□□□□ -0.42
HDAC3-212ENST00000492407 RBM42Q9BTD8 480 aaKnown RBP12.43□□□□□ -0.42
HDAC3-212ENST00000492407 ADCY9O60503 1353 aa12.43□□□□□ -0.42
HDAC3-212ENST00000492407 RFC4P35249 363 aa12.42□□□□□ -0.42
HDAC3-212ENST00000492407 AKAP4Q5JQC9 854 aa12.42□□□□□ -0.42
HDAC3-212ENST00000492407 SULT6B1Q6IMI4 303 aa12.42□□□□□ -0.42
HDAC3-212ENST00000492407 KDM6AO15550 1401 aaPredicted RBP12.42□□□□□ -0.42
HDAC3-212ENST00000492407 ATP10DQ9P241 1426 aa12.42□□□□□ -0.42
HDAC3-212ENST00000492407 GYS1P13807 737 aa12.41□□□□□ -0.42
HDAC3-212ENST00000492407 SMIM5Q71RC9 77 aa12.41□□□□□ -0.42
HDAC3-212ENST00000492407 NFATC2IPQ8NCF5 419 aa12.41□□□□□ -0.42
HDAC3-212ENST00000492407 GPBP1L1Q9HC44 474 aaPredicted RBP12.41□□□□□ -0.42
HDAC3-212ENST00000492407 AEBP1Q8IUX7 1158 aa12.4□□□□□ -0.42
HDAC3-212ENST00000492407 CCDC87Q9NVE4 849 aa12.4□□□□□ -0.42
HDAC3-212ENST00000492407 PER1O15534 1290 aaPredicted RBP12.39□□□□□ -0.43
HDAC3-212ENST00000492407 PARP3Q9Y6F1 533 aa12.39□□□□□ -0.43
HDAC3-212ENST00000492407 KIF7Q2M1P5 1343 aa12.38□□□□□ -0.43
HDAC3-212ENST00000492407 C10orf71Q711Q0 1435 aa12.38□□□□□ -0.43
HDAC3-212ENST00000492407 CRKLP46109 303 aaKnown RBP12.38□□□□□ -0.43
HDAC3-212ENST00000492407 SLC52A2Q9HAB3 445 aa12.38□□□□□ -0.43
HDAC3-212ENST00000492407 NPC1L1Q9UHC9 1359 aa12.38□□□□□ -0.43
HDAC3-212ENST00000492407 PXDNLA1KZ92 1463 aa12.38□□□□□ -0.43
HDAC3-212ENST00000492407 PTCD1O75127 700 aaKnown RBP12.37□□□□□ -0.43
HDAC3-212ENST00000492407 VSIG10Q8N0Z9 540 aa12.37□□□□□ -0.43
HDAC3-212ENST00000492407 CICQ96RK0 1608 aaPredicted RBP12.37□□□□□ -0.43
HDAC3-212ENST00000492407 USP42Q9H9J4 1324 aaKnown RBP12.37□□□□□ -0.43
HDAC3-212ENST00000492407 DIAPH1O60610 1272 aaKnown RBP12.36□□□□□ -0.43
HDAC3-212ENST00000492407 COL5A3P25940 1745 aaPredicted RBP12.35□□□□□ -0.43
HDAC3-212ENST00000492407 A0A0G2JLW4 131 aa12.35□□□□□ -0.43
HDAC3-212ENST00000492407 RNMTO43148 476 aaKnown RBP12.35□□□□□ -0.43
HDAC3-212ENST00000492407 INTS5Q6P9B9 1019 aaKnown RBP12.35□□□□□ -0.43
HDAC3-212ENST00000492407 KIF13BQ9NQT8 1826 aa12.34□□□□□ -0.43
HDAC3-212ENST00000492407 DPEP1P16444 411 aa12.34□□□□□ -0.43
HDAC3-212ENST00000492407 TM4SF1P30408 202 aa12.34□□□□□ -0.43
HDAC3-212ENST00000492407 LGR6Q9HBX8 967 aa12.34□□□□□ -0.43
HDAC3-212ENST00000492407 PIM2Q9P1W9 311 aa12.34□□□□□ -0.43
HDAC3-212ENST00000492407 BCS1LQ9Y276 419 aa12.34□□□□□ -0.43
HDAC3-212ENST00000492407 MRC1P22897 1456 aa12.34□□□□□ -0.43
HDAC3-212ENST00000492407 ZPR1O75312 459 aa12.33□□□□□ -0.44
HDAC3-212ENST00000492407 CYP19A1P11511 503 aaPredicted RBP12.33□□□□□ -0.44
HDAC3-212ENST00000492407 HSPA6P17066 643 aa12.33□□□□□ -0.44
HDAC3-212ENST00000492407 KCNA3P22001 575 aa12.33□□□□□ -0.44
HDAC3-212ENST00000492407 MTHFSDQ2M296 383 aaKnown RBP12.33□□□□□ -0.44
HDAC3-212ENST00000492407 C4AP0C0L4 1744 aa12.33□□□□□ -0.44
HDAC3-212ENST00000492407 KIF3CO14782 793 aa12.32□□□□□ -0.44
HDAC3-212ENST00000492407 FCHSD2O94868 740 aa12.32□□□□□ -0.44
HDAC3-212ENST00000492407 FKBP8Q14318 412 aa12.32□□□□□ -0.44
HDAC3-212ENST00000492407 ARHGAP27Q6ZUM4 889 aa12.32□□□□□ -0.44
HDAC3-212ENST00000492407 DNAJC10Q8IXB1 793 aa12.32□□□□□ -0.44
HDAC3-212ENST00000492407 TEX13AQ9BXU3 409 aaPredicted RBP12.32□□□□□ -0.44
HDAC3-212ENST00000492407 NARFQ9UHQ1 456 aa12.32□□□□□ -0.44
HDAC3-212ENST00000492407 SOS1Q07889 1333 aaPredicted RBP12.32□□□□□ -0.44
HDAC3-212ENST00000492407 POLRMTO00411 1230 aaKnown RBP12.31□□□□□ -0.44
HDAC3-212ENST00000492407 HMOX1P09601 288 aa12.31□□□□□ -0.44
HDAC3-212ENST00000492407 DDR1Q08345 913 aa12.31□□□□□ -0.44
HDAC3-212ENST00000492407 DALRD3Q5D0E6 543 aaKnown RBP12.31□□□□□ -0.44
HDAC3-212ENST00000492407 GAS2L2Q8NHY3 880 aa12.31□□□□□ -0.44
HDAC3-212ENST00000492407 A0A087WZG4 1122 aa12.3□□□□□ -0.44
HDAC3-212ENST00000492407 TOMM70O94826 608 aa12.3□□□□□ -0.44
HDAC3-212ENST00000492407 STARD3NLO95772 234 aa12.3□□□□□ -0.44
HDAC3-212ENST00000492407 ZNF526Q8TF50 670 aaPredicted RBP12.3□□□□□ -0.44
HDAC3-212ENST00000492407 SRP68Q9UHB9 627 aaKnown RBP12.3□□□□□ -0.44
HDAC3-212ENST00000492407 WWC3Q9ULE0 1092 aa12.3□□□□□ -0.44
HDAC3-212ENST00000492407 KIAA1551Q9HCM1 1747 aa12.3□□□□□ -0.44
HDAC3-212ENST00000492407 SCN11AQ9UI33 1791 aa12.3□□□□□ -0.44
HDAC3-212ENST00000492407 ADAMTS7Q9UKP4 1686 aa12.29□□□□□ -0.44
HDAC3-212ENST00000492407 GNAT3A8MTJ3 354 aa12.29□□□□□ -0.44
HDAC3-212ENST00000492407 CC2D1BQ5T0F9 858 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms