RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, human

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF3A-209	ENST00000492270	COL5A3	P25940	1745 aa	Predicted RBP	33.16	■■■□□ 2.9
UPF3A-209	ENST00000492270	DDX10	Q13206	875 aa	Known RBP	33.15	■■■□□ 2.9
UPF3A-209	ENST00000492270	MRC1	P22897	1456 aa		33.14	■■■□□ 2.9
UPF3A-209	ENST00000492270	ITPK1	Q13572	414 aa		33.13	■■■□□ 2.89
UPF3A-209	ENST00000492270	NFATC2IP	Q8NCF5	419 aa		33.13	■■■□□ 2.89
UPF3A-209	ENST00000492270	LINC00116	Q8NCU8	138 aa		33.13	■■■□□ 2.89
UPF3A-209	ENST00000492270	SGIP1	Q9BQI5	828 aa		33.13	■■■□□ 2.89
UPF3A-209	ENST00000492270	LGR6	Q9HBX8	967 aa		33.13	■■■□□ 2.89
UPF3A-209	ENST00000492270	ATP6V1A	P38606	617 aa		33.11	■■■□□ 2.89
UPF3A-209	ENST00000492270	COL23A1	Q86Y22	540 aa	Predicted RBP	33.11	■■■□□ 2.89
UPF3A-209	ENST00000492270	SLC4A9	Q96Q91	983 aa		33.11	■■■□□ 2.89
UPF3A-209	ENST00000492270	RSPH6A	Q9H0K4	717 aa		33.1	■■■□□ 2.89
UPF3A-209	ENST00000492270	TJP1	Q07157	1748 aa		33.09	■■■□□ 2.89
UPF3A-209	ENST00000492270	RNMT	O43148	476 aa	Known RBP	33.09	■■■□□ 2.89
UPF3A-209	ENST00000492270	AMIGO3	Q86WK7	504 aa		33.09	■■■□□ 2.89
UPF3A-209	ENST00000492270	RBM42	Q9BTD8	480 aa	Known RBP	33.09	■■■□□ 2.89
UPF3A-209	ENST00000492270	NUDC	Q9Y266	331 aa		33.09	■■■□□ 2.89
UPF3A-209	ENST00000492270	PRKAR2B	P31323	418 aa		33.08	■■■□□ 2.89
UPF3A-209	ENST00000492270	SLC16A10	Q8TF71	515 aa		33.08	■■■□□ 2.89
UPF3A-209	ENST00000492270	AK7	Q96M32	723 aa		33.08	■■■□□ 2.89
UPF3A-209	ENST00000492270	SIPA1L3	O60292	1781 aa	Predicted RBP	33.08	■■■□□ 2.89
UPF3A-209	ENST00000492270	MSH5	O43196	834 aa		33.07	■■■□□ 2.88
UPF3A-209	ENST00000492270	SMIM5	Q71RC9	77 aa		33.07	■■■□□ 2.88
UPF3A-209	ENST00000492270	U2AF1L5	P0DN76	240 aa	Predicted RBP	33.06	■■■□□ 2.88
UPF3A-209	ENST00000492270	U2AF1	Q01081	240 aa	Known RBP eCLIP	33.06	■■■□□ 2.88
UPF3A-209	ENST00000492270	PHACTR3	Q96KR7	559 aa		33.06	■■■□□ 2.88
UPF3A-209	ENST00000492270	SLC52A2	Q9HAB3	445 aa		33.06	■■■□□ 2.88
UPF3A-209	ENST00000492270	MYH14	Q7Z406	1995 aa	Known RBP	33.06	■■■□□ 2.88
UPF3A-209	ENST00000492270	CIC	Q96RK0	1608 aa	Predicted RBP	33.06	■■■□□ 2.88
UPF3A-209	ENST00000492270	HMGB2	P26583	209 aa	Known RBP	33.04	■■■□□ 2.88
UPF3A-209	ENST00000492270	ZEB1	P37275	1124 aa	Predicted RBP	33.04	■■■□□ 2.88
UPF3A-209	ENST00000492270	MAP3K5	Q99683	1374 aa		33.04	■■■□□ 2.88
UPF3A-209	ENST00000492270	GAS2L2	Q8NHY3	880 aa		33.03	■■■□□ 2.88
UPF3A-209	ENST00000492270	UBR2	Q8IWV8	1755 aa		33.03	■■■□□ 2.88
UPF3A-209	ENST00000492270	PTCD1	O75127	700 aa	Known RBP	33.02	■■■□□ 2.88
UPF3A-209	ENST00000492270	PHF14	O94880	888 aa		33.02	■■■□□ 2.88
UPF3A-209	ENST00000492270	ARX	Q96QS3	562 aa		33	■■■□□ 2.87
UPF3A-209	ENST00000492270	DLG5	Q8TDM6	1919 aa		33	■■■□□ 2.87
UPF3A-209	ENST00000492270	MSL1	Q68DK7	614 aa		32.99	■■■□□ 2.87
UPF3A-209	ENST00000492270	FLAD1	Q8NFF5	587 aa		32.99	■■■□□ 2.87
UPF3A-209	ENST00000492270	FHDC1	Q9C0D6	1143 aa	Predicted RBP	32.99	■■■□□ 2.87
UPF3A-209	ENST00000492270	KCP	Q6ZWJ8	1503 aa		32.98	■■■□□ 2.87
UPF3A-209	ENST00000492270	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	32.98	■■■□□ 2.87
UPF3A-209	ENST00000492270	GNAT3	A8MTJ3	354 aa		32.98	■■■□□ 2.87
UPF3A-209	ENST00000492270	GNPAT	O15228	680 aa		32.98	■■■□□ 2.87
UPF3A-209	ENST00000492270	SLC39A6	Q13433	755 aa		32.97	■■■□□ 2.87
UPF3A-209	ENST00000492270	RALBP1	Q15311	655 aa		32.97	■■■□□ 2.87
UPF3A-209	ENST00000492270	C4A	P0C0L4	1744 aa		32.97	■■■□□ 2.87
UPF3A-209	ENST00000492270	FCHSD2	O94868	740 aa		32.96	■■■□□ 2.87
UPF3A-209	ENST00000492270	IL17RE	Q8NFR9	667 aa		32.96	■■■□□ 2.87
UPF3A-209	ENST00000492270	SSFA2	P28290	1259 aa		32.95	■■■□□ 2.87
UPF3A-209	ENST00000492270	POLD1	P28340	1107 aa		32.95	■■■□□ 2.87
UPF3A-209	ENST00000492270	SYT17	Q9BSW7	474 aa		32.92	■■■□□ 2.86
UPF3A-209	ENST00000492270	CNTNAP4	Q9C0A0	1308 aa		32.92	■■■□□ 2.86
UPF3A-209	ENST00000492270	CEMIP	Q8WUJ3	1361 aa		32.9	■■■□□ 2.86
UPF3A-209	ENST00000492270	TEF	Q10587	303 aa		32.89	■■■□□ 2.86
UPF3A-209	ENST00000492270	RC3H1	Q5TC82	1133 aa	Known RBP	32.89	■■■□□ 2.86
UPF3A-209	ENST00000492270	MYBBP1A	Q9BQG0	1328 aa	Known RBP	32.88	■■■□□ 2.85
UPF3A-209	ENST00000492270	KLHL34	Q8N239	644 aa		32.88	■■■□□ 2.85
UPF3A-209	ENST00000492270	RTCB	Q9Y3I0	505 aa	Known RBP	32.88	■■■□□ 2.85
UPF3A-209	ENST00000492270	CRKL	P46109	303 aa	Known RBP	32.87	■■■□□ 2.85
UPF3A-209	ENST00000492270	DNAJC10	Q8IXB1	793 aa		32.87	■■■□□ 2.85
UPF3A-209	ENST00000492270	RPS6KA4	O75676	772 aa		32.84	■■■□□ 2.85
UPF3A-209	ENST00000492270	MCM10	Q7L590	875 aa		32.83	■■■□□ 2.85
UPF3A-209	ENST00000492270	PLEKHF1	Q96S99	279 aa		32.83	■■■□□ 2.85
UPF3A-209	ENST00000492270	TRAPPC3L	Q5T215	181 aa		32.82	■■■□□ 2.84
UPF3A-209	ENST00000492270	DCTN1	Q14203	1278 aa		32.81	■■■□□ 2.84
UPF3A-209	ENST00000492270	TTC5	Q8N0Z6	440 aa		32.81	■■■□□ 2.84
UPF3A-209	ENST00000492270	ARHGEF1	Q92888	912 aa	Known RBP	32.81	■■■□□ 2.84
UPF3A-209	ENST00000492270	INTS5	Q6P9B9	1019 aa	Known RBP	32.8	■■■□□ 2.84
UPF3A-209	ENST00000492270	ZNF790	Q6PG37	636 aa		32.79	■■■□□ 2.84
UPF3A-209	ENST00000492270	RTF1	Q92541	710 aa	Known RBP	32.79	■■■□□ 2.84
UPF3A-209	ENST00000492270	CYP19A1	P11511	503 aa	Predicted RBP	32.78	■■■□□ 2.84
UPF3A-209	ENST00000492270	ADRA2B	P18089	450 aa		32.78	■■■□□ 2.84
UPF3A-209	ENST00000492270	ZNF496	Q96IT1	587 aa	Predicted RBP	32.78	■■■□□ 2.84
UPF3A-209	ENST00000492270	PRKRIP1	Q9H875	184 aa	Predicted RBP	32.78	■■■□□ 2.84
UPF3A-209	ENST00000492270	NLGN2	Q8NFZ4	835 aa		32.77	■■■□□ 2.84
UPF3A-209	ENST00000492270	KCNQ3	O43525	872 aa		32.76	■■■□□ 2.83
UPF3A-209	ENST00000492270	NEFM	P07197	916 aa		32.76	■■■□□ 2.83
UPF3A-209	ENST00000492270	VSIG10	Q8N0Z9	540 aa		32.76	■■■□□ 2.83
UPF3A-209	ENST00000492270	CCDC87	Q9NVE4	849 aa		32.76	■■■□□ 2.83
UPF3A-209	ENST00000492270	HEG1	Q9ULI3	1381 aa		32.75	■■■□□ 2.83
UPF3A-209	ENST00000492270	BTBD11	A6QL63	1104 aa		32.75	■■■□□ 2.83
UPF3A-209	ENST00000492270	RFC4	P35249	363 aa		32.74	■■■□□ 2.83
UPF3A-209	ENST00000492270	HTATSF1	O43719	755 aa	Known RBP	32.73	■■■□□ 2.83
UPF3A-209	ENST00000492270	KDM3B	Q7LBC6	1761 aa		32.73	■■■□□ 2.83
UPF3A-209	ENST00000492270	DCAF8L1	A6NGE4	600 aa		32.72	■■■□□ 2.83
UPF3A-209	ENST00000492270	GYS1	P13807	737 aa		32.72	■■■□□ 2.83
UPF3A-209	ENST00000492270	NFE2L2	Q16236	605 aa		32.72	■■■□□ 2.83
UPF3A-209	ENST00000492270	ZBTB1	Q9Y2K1	713 aa		32.72	■■■□□ 2.83
UPF3A-209	ENST00000492270	MAPK8IP3	Q9UPT6	1336 aa		32.72	■■■□□ 2.83
UPF3A-209	ENST00000492270	SRP68	Q9UHB9	627 aa	Known RBP	32.71	■■■□□ 2.83
UPF3A-209	ENST00000492270	SOS1	Q07889	1333 aa	Predicted RBP	32.71	■■■□□ 2.83
UPF3A-209	ENST00000492270	PNN	Q9H307	717 aa	Known RBP	32.7	■■■□□ 2.83
UPF3A-209	ENST00000492270	KIF13B	Q9NQT8	1826 aa		32.7	■■■□□ 2.82
UPF3A-209	ENST00000492270	ZNF316	A6NFI3	1004 aa	Predicted RBP	32.69	■■■□□ 2.82
UPF3A-209	ENST00000492270	MMP10	P09238	476 aa		32.69	■■■□□ 2.82
UPF3A-209	ENST00000492270	FMNL2	Q96PY5	1086 aa		32.69	■■■□□ 2.82
UPF3A-209	ENST00000492270	USP42	Q9H9J4	1324 aa	Known RBP	32.69	■■■□□ 2.82
UPF3A-209	ENST00000492270	NLGN1	Q8N2Q7	840 aa		32.67	■■■□□ 2.82

Retrieved 100 of 20,778 RNA–protein pairs in 69 ms