RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 TAF3Q5VWG9 929 aa15.36■□□□□ 0.05
COL6A3-212ENST00000491769 MAP3K9P80192 1104 aa15.36■□□□□ 0.05
COL6A3-212ENST00000491769 NUDT16Q96DE0 195 aaKnown RBP15.36■□□□□ 0.05
COL6A3-212ENST00000491769 CABP5Q9NP86 173 aa15.35■□□□□ 0.05
COL6A3-212ENST00000491769 MAP3K12Q12852 859 aa15.35■□□□□ 0.05
COL6A3-212ENST00000491769 ATF7IPQ6VMQ6 1270 aa15.35■□□□□ 0.05
COL6A3-212ENST00000491769 ZNF397Q8NF99 534 aaPredicted RBP15.35■□□□□ 0.05
COL6A3-212ENST00000491769 CDCA7LQ96GN5 454 aa15.35■□□□□ 0.05
COL6A3-212ENST00000491769 CTCFLQ8NI51 663 aaPredicted RBP15.35■□□□□ 0.05
COL6A3-212ENST00000491769 CCDC82Q8N4S0 544 aa15.35■□□□□ 0.05
COL6A3-212ENST00000491769 ST5P78524 1137 aa15.34■□□□□ 0.05
COL6A3-212ENST00000491769 KRT32Q14532 448 aa15.34■□□□□ 0.05
COL6A3-212ENST00000491769 CTNNBL1Q8WYA6 563 aaPredicted RBP15.34■□□□□ 0.05
COL6A3-212ENST00000491769 MPHOSPH6Q99547 160 aaKnown RBP15.34■□□□□ 0.05
COL6A3-212ENST00000491769 SAMM50Q9Y512 469 aa15.34■□□□□ 0.05
COL6A3-212ENST00000491769 LEKR1Q6ZMV7 388 aa15.34■□□□□ 0.05
COL6A3-212ENST00000491769 MACROD2A1Z1Q3 448 aa15.34■□□□□ 0.05
COL6A3-212ENST00000491769 HSP90AB3PQ58FF7 597 aa15.34■□□□□ 0.05
COL6A3-212ENST00000491769 ANKRD18BA2A2Z9 1011 aa15.33■□□□□ 0.05
COL6A3-212ENST00000491769 DDX46Q7L014 1031 aaKnown RBP15.33■□□□□ 0.05
COL6A3-212ENST00000491769 TMEM266Q2M3C6 531 aa15.33■□□□□ 0.04
COL6A3-212ENST00000491769 PABPN1LA6NDY0 278 aaKnown RBP15.33■□□□□ 0.04
COL6A3-212ENST00000491769 NBPF1Q3BBV0 1214 aa15.33■□□□□ 0.04
COL6A3-212ENST00000491769 GRIPAP1Q4V328 841 aa15.33■□□□□ 0.04
COL6A3-212ENST00000491769 ERBINQ96RT1 1412 aa15.33■□□□□ 0.04
COL6A3-212ENST00000491769 GOLGA6L7A0A1B0GV03 622 aa15.33■□□□□ 0.04
COL6A3-212ENST00000491769 WDR33Q9C0J8 1336 aaKnown RBP15.33■□□□□ 0.04
COL6A3-212ENST00000491769 FGD6Q6ZV73 1430 aa15.33■□□□□ 0.04
COL6A3-212ENST00000491769 VAT1LQ9HCJ6 419 aa15.32■□□□□ 0.04
COL6A3-212ENST00000491769 FOXO3O43524 673 aa15.32■□□□□ 0.04
COL6A3-212ENST00000491769 LARP1Q6PKG0 1096 aaKnown RBP15.32■□□□□ 0.04
COL6A3-212ENST00000491769 MPNDQ8N594 471 aa15.32■□□□□ 0.04
COL6A3-212ENST00000491769 CFAP45Q9UL16 551 aa15.32■□□□□ 0.04
COL6A3-212ENST00000491769 IQCEQ6IPM2 695 aa15.32■□□□□ 0.04
COL6A3-212ENST00000491769 CCDC91Q7Z6B0 441 aa15.32■□□□□ 0.04
COL6A3-212ENST00000491769 HOMER2Q9NSB8 354 aa15.32■□□□□ 0.04
COL6A3-212ENST00000491769 DMRT2Q9Y5R5 561 aa15.32■□□□□ 0.04
COL6A3-212ENST00000491769 IQCA1Q86XH1 822 aa15.32■□□□□ 0.04
COL6A3-212ENST00000491769 MCM10Q7L590 875 aa15.32■□□□□ 0.04
COL6A3-212ENST00000491769 TRAK2O60296 914 aa15.31■□□□□ 0.04
COL6A3-212ENST00000491769 CASTP20810 708 aaKnown RBP15.31■□□□□ 0.04
COL6A3-212ENST00000491769 UBAP1LF5GYI3 381 aa15.31■□□□□ 0.04
COL6A3-212ENST00000491769 BAG4O95429 457 aaKnown RBP15.31■□□□□ 0.04
COL6A3-212ENST00000491769 KIAA0754O94854 1291 aa15.31■□□□□ 0.04
COL6A3-212ENST00000491769 TNNT1P13805 278 aa15.31■□□□□ 0.04
COL6A3-212ENST00000491769 CACNA2D4Q7Z3S7 1137 aa15.31■□□□□ 0.04
COL6A3-212ENST00000491769 RAB34Q9BZG1 259 aa15.31■□□□□ 0.04
COL6A3-212ENST00000491769 BOLA2Q9H3K6 86 aa15.31■□□□□ 0.04
COL6A3-212ENST00000491769 CTNNA2P26232 953 aa15.31■□□□□ 0.04
COL6A3-212ENST00000491769 U3KPZ7 1027 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-212ENST00000491769 HLA-DOAP06340 250 aa15.3■□□□□ 0.04
COL6A3-212ENST00000491769 ZNF354CQ86Y25 554 aa15.3■□□□□ 0.04
COL6A3-212ENST00000491769 UPF3BQ9BZI7 483 aaKnown RBP15.3■□□□□ 0.04
COL6A3-212ENST00000491769 CCDC113Q9H0I3 377 aa15.3■□□□□ 0.04
COL6A3-212ENST00000491769 PUF60Q9UHX1 559 aaKnown RBP15.3■□□□□ 0.04
COL6A3-212ENST00000491769 NLRP5P59047 1200 aa15.3■□□□□ 0.04
COL6A3-212ENST00000491769 KLHL10Q6JEL2 608 aa15.3■□□□□ 0.04
COL6A3-212ENST00000491769 FKBP15Q5T1M5 1219 aa15.3■□□□□ 0.04
COL6A3-212ENST00000491769 ZSCAN31Q96LW9 406 aaPredicted RBP15.3■□□□□ 0.04
COL6A3-212ENST00000491769 BRD4O60885 1362 aaPredicted RBP15.3■□□□□ 0.04
COL6A3-212ENST00000491769 WAPLQ7Z5K2 1190 aa15.3■□□□□ 0.04
COL6A3-212ENST00000491769 ZBTB3Q9H5J0 574 aa15.3■□□□□ 0.04
COL6A3-212ENST00000491769 SPTY2D1Q68D10 685 aaPredicted RBP15.29■□□□□ 0.04
COL6A3-212ENST00000491769 RUSC2Q8N2Y8 1516 aa15.29■□□□□ 0.04
COL6A3-212ENST00000491769 SLC12A7Q9Y666 1083 aa15.29■□□□□ 0.04
COL6A3-212ENST00000491769 DUSP27Q5VZP5 1158 aa15.29■□□□□ 0.04
COL6A3-212ENST00000491769 BIN2Q9UBW5 565 aaPredicted RBP15.29■□□□□ 0.04
COL6A3-212ENST00000491769 CCDC194A0A1B0GVG4 234 aa15.28■□□□□ 0.04
COL6A3-212ENST00000491769 GSTTP1A0A1W2PQM5 241 aa15.28■□□□□ 0.04
COL6A3-212ENST00000491769 MRE11P49959 708 aa15.28■□□□□ 0.04
COL6A3-212ENST00000491769 BICD1Q96G01 975 aa15.28■□□□□ 0.04
COL6A3-212ENST00000491769 USP8P40818 1118 aa15.28■□□□□ 0.04
COL6A3-212ENST00000491769 SPA17Q15506 151 aa15.28■□□□□ 0.04
COL6A3-212ENST00000491769 EXOC6BQ9Y2D4 811 aa15.28■□□□□ 0.04
COL6A3-212ENST00000491769 CKAP2LQ8IYA6 745 aa15.28■□□□□ 0.04
COL6A3-212ENST00000491769 PPP6R1Q9UPN7 881 aa15.28■□□□□ 0.04
COL6A3-212ENST00000491769 CCDC196A0A1B0GTZ2 297 aa15.28■□□□□ 0.04
COL6A3-212ENST00000491769 SMTNL1A8MU46 457 aa15.28■□□□□ 0.04
COL6A3-212ENST00000491769 ERLIN1O75477 346 aa15.28■□□□□ 0.04
COL6A3-212ENST00000491769 DNA2P51530 1060 aa15.28■□□□□ 0.04
COL6A3-212ENST00000491769 CCDC178Q5BJE1 867 aa15.28■□□□□ 0.04
COL6A3-212ENST00000491769 MRPS9P82933 396 aaKnown RBP15.27■□□□□ 0.04
COL6A3-212ENST00000491769 ATAD2Q6PL18 1390 aa15.27■□□□□ 0.04
COL6A3-212ENST00000491769 AMOTQ4VCS5 1084 aa15.27■□□□□ 0.04
COL6A3-212ENST00000491769 VPS36Q86VN1 386 aa15.27■□□□□ 0.04
COL6A3-212ENST00000491769 PHF8Q9UPP1 1060 aa15.27■□□□□ 0.04
COL6A3-212ENST00000491769 CHD1LQ86WJ1 897 aa15.27■□□□□ 0.03
COL6A3-212ENST00000491769 CDC5LQ99459 802 aaKnown RBP15.27■□□□□ 0.03
COL6A3-212ENST00000491769 F8W031 263 aaPredicted RBP15.27■□□□□ 0.03
COL6A3-212ENST00000491769 HOOK3Q86VS8 718 aa15.27■□□□□ 0.03
COL6A3-212ENST00000491769 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.27■□□□□ 0.03
COL6A3-212ENST00000491769 GOPCQ9HD26 462 aa15.27■□□□□ 0.03
COL6A3-212ENST00000491769 HDAC9Q9UKV0 1011 aa15.27■□□□□ 0.03
COL6A3-212ENST00000491769 STAMBPO95630 424 aa15.27■□□□□ 0.03
COL6A3-212ENST00000491769 CFAP100Q494V2 611 aa15.27■□□□□ 0.03
COL6A3-212ENST00000491769 SYCP3Q8IZU3 236 aa15.27■□□□□ 0.03
COL6A3-212ENST00000491769 POLD1P28340 1107 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 NBPF6Q5VWK0 638 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 CATIPQ7Z7H3 387 aa15.26■□□□□ 0.03
COL6A3-212ENST00000491769 NBPF5PQ86XG9 351 aaPredicted RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms