RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 MTFR1LQ9H019 292 aa24.34■■□□□ 1.49
COL9A3-214ENST00000490398 RNMTO43148 476 aaKnown RBP24.33■■□□□ 1.49
COL9A3-214ENST00000490398 PRKAR2BP31323 418 aa24.33■■□□□ 1.49
COL9A3-214ENST00000490398 ZEB1P37275 1124 aaPredicted RBP24.33■■□□□ 1.49
COL9A3-214ENST00000490398 COL23A1Q86Y22 540 aaPredicted RBP24.33■■□□□ 1.49
COL9A3-214ENST00000490398 U2AF1L5P0DN76 240 aaPredicted RBP24.32■■□□□ 1.48
COL9A3-214ENST00000490398 ATP6V1AP38606 617 aa24.32■■□□□ 1.48
COL9A3-214ENST00000490398 U2AF1Q01081 240 aaKnown RBP eCLIP24.32■■□□□ 1.48
COL9A3-214ENST00000490398 TAF1LQ8IZX4 1826 aa24.32■■□□□ 1.48
COL9A3-214ENST00000490398 RBM42Q9BTD8 480 aaKnown RBP24.31■■□□□ 1.48
COL9A3-214ENST00000490398 C4BP0C0L5 1744 aa24.3■■□□□ 1.48
COL9A3-214ENST00000490398 QSER1Q2KHR3 1735 aa24.3■■□□□ 1.48
COL9A3-214ENST00000490398 PPP1R1BQ9UD71 204 aaPredicted RBP24.3■■□□□ 1.48
COL9A3-214ENST00000490398 NUDCQ9Y266 331 aa24.3■■□□□ 1.48
COL9A3-214ENST00000490398 SCN11AQ9UI33 1791 aa24.29■■□□□ 1.48
COL9A3-214ENST00000490398 SLC52A2Q9HAB3 445 aa24.29■■□□□ 1.48
COL9A3-214ENST00000490398 IL17REQ8NFR9 667 aa24.28■■□□□ 1.48
COL9A3-214ENST00000490398 ADAMTS7Q9UKP4 1686 aa24.27■■□□□ 1.48
COL9A3-214ENST00000490398 PTCD1O75127 700 aaKnown RBP24.27■■□□□ 1.48
COL9A3-214ENST00000490398 AK7Q96M32 723 aa24.27■■□□□ 1.48
COL9A3-214ENST00000490398 MRC1P22897 1456 aa24.26■■□□□ 1.47
COL9A3-214ENST00000490398 MSH5O43196 834 aa24.26■■□□□ 1.47
COL9A3-214ENST00000490398 SLC39A6Q13433 755 aa24.26■■□□□ 1.47
COL9A3-214ENST00000490398 GAS2L2Q8NHY3 880 aa24.26■■□□□ 1.47
COL9A3-214ENST00000490398 PHF14O94880 888 aa24.25■■□□□ 1.47
COL9A3-214ENST00000490398 RALBP1Q15311 655 aa24.25■■□□□ 1.47
COL9A3-214ENST00000490398 MAP3K5Q99683 1374 aa24.25■■□□□ 1.47
COL9A3-214ENST00000490398 SLC16A10Q8TF71 515 aa24.24■■□□□ 1.47
COL9A3-214ENST00000490398 GNAT3A8MTJ3 354 aa24.23■■□□□ 1.47
COL9A3-214ENST00000490398 FCHSD2O94868 740 aa24.23■■□□□ 1.47
COL9A3-214ENST00000490398 MSL1Q68DK7 614 aa24.23■■□□□ 1.47
COL9A3-214ENST00000490398 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.22■■□□□ 1.47
COL9A3-214ENST00000490398 GNPATO15228 680 aa24.21■■□□□ 1.47
COL9A3-214ENST00000490398 ARXQ96QS3 562 aa24.21■■□□□ 1.47
COL9A3-214ENST00000490398 UBR3Q6ZT12 1888 aa24.2■■□□□ 1.46
COL9A3-214ENST00000490398 FHDC1Q9C0D6 1143 aaPredicted RBP24.2■■□□□ 1.46
COL9A3-214ENST00000490398 COL24A1Q17RW2 1714 aa24.19■■□□□ 1.46
COL9A3-214ENST00000490398 VIRMAQ69YN4 1812 aaKnown RBP24.19■■□□□ 1.46
COL9A3-214ENST00000490398 ZNF831Q5JPB2 1677 aa24.18■■□□□ 1.46
COL9A3-214ENST00000490398 KCPQ6ZWJ8 1503 aa24.18■■□□□ 1.46
COL9A3-214ENST00000490398 COL5A3P25940 1745 aaPredicted RBP24.18■■□□□ 1.46
COL9A3-214ENST00000490398 UTRNP46939 3433 aa24.17■■□□□ 1.46
COL9A3-214ENST00000490398 MYBBP1AQ9BQG0 1328 aaKnown RBP24.17■■□□□ 1.46
COL9A3-214ENST00000490398 SSFA2P28290 1259 aa24.17■■□□□ 1.46
COL9A3-214ENST00000490398 DCTN1Q14203 1278 aa24.17■■□□□ 1.46
COL9A3-214ENST00000490398 DNAJC10Q8IXB1 793 aa24.17■■□□□ 1.46
COL9A3-214ENST00000490398 FLAD1Q8NFF5 587 aa24.17■■□□□ 1.46
COL9A3-214ENST00000490398 PLEKHF1Q96S99 279 aa24.17■■□□□ 1.46
COL9A3-214ENST00000490398 TJP1Q07157 1748 aa24.17■■□□□ 1.46
COL9A3-214ENST00000490398 CEMIPQ8WUJ3 1361 aa24.16■■□□□ 1.46
COL9A3-214ENST00000490398 MCM10Q7L590 875 aa24.16■■□□□ 1.46
COL9A3-214ENST00000490398 SYT17Q9BSW7 474 aa24.16■■□□□ 1.46
COL9A3-214ENST00000490398 CNTNAP4Q9C0A0 1308 aa24.15■■□□□ 1.46
COL9A3-214ENST00000490398 TEFQ10587 303 aa24.15■■□□□ 1.46
COL9A3-214ENST00000490398 RC3H1Q5TC82 1133 aaKnown RBP24.15■■□□□ 1.46
COL9A3-214ENST00000490398 PRKRIP1Q9H875 184 aaPredicted RBP24.15■■□□□ 1.46
COL9A3-214ENST00000490398 KCNQ3O43525 872 aa24.14■■□□□ 1.45
COL9A3-214ENST00000490398 HMGB2P26583 209 aaKnown RBP24.14■■□□□ 1.45
COL9A3-214ENST00000490398 POLD1P28340 1107 aa24.14■■□□□ 1.45
COL9A3-214ENST00000490398 CRKLP46109 303 aaKnown RBP24.13■■□□□ 1.45
COL9A3-214ENST00000490398 INTS5Q6P9B9 1019 aaKnown RBP24.13■■□□□ 1.45
COL9A3-214ENST00000490398 RTCBQ9Y3I0 505 aaKnown RBP24.13■■□□□ 1.45
COL9A3-214ENST00000490398 MYH14Q7Z406 1995 aaKnown RBP24.12■■□□□ 1.45
COL9A3-214ENST00000490398 RPS6KA4O75676 772 aa24.12■■□□□ 1.45
COL9A3-214ENST00000490398 ARHGEF1Q92888 912 aaKnown RBP24.12■■□□□ 1.45
COL9A3-214ENST00000490398 SIPA1L3O60292 1781 aaPredicted RBP24.11■■□□□ 1.45
COL9A3-214ENST00000490398 ZNF316A6NFI3 1004 aaPredicted RBP24.11■■□□□ 1.45
COL9A3-214ENST00000490398 ZNF496Q96IT1 587 aaPredicted RBP24.11■■□□□ 1.45
COL9A3-214ENST00000490398 GOLGB1Q14789 3259 aaKnown RBP24.11■■□□□ 1.45
COL9A3-214ENST00000490398 CICQ96RK0 1608 aaPredicted RBP24.1■■□□□ 1.45
COL9A3-214ENST00000490398 CYP19A1P11511 503 aaPredicted RBP24.1■■□□□ 1.45
COL9A3-214ENST00000490398 TRAPPC3LQ5T215 181 aa24.1■■□□□ 1.45
COL9A3-214ENST00000490398 ZNF790Q6PG37 636 aa24.1■■□□□ 1.45
COL9A3-214ENST00000490398 KLHL34Q8N239 644 aa24.1■■□□□ 1.45
COL9A3-214ENST00000490398 UBR2Q8IWV8 1755 aa24.08■■□□□ 1.45
COL9A3-214ENST00000490398 NLGN2Q8NFZ4 835 aa24.08■■□□□ 1.45
COL9A3-214ENST00000490398 RTF1Q92541 710 aaKnown RBP24.08■■□□□ 1.45
COL9A3-214ENST00000490398 BTBD11A6QL63 1104 aa24.07■■□□□ 1.44
COL9A3-214ENST00000490398 NFE2L2Q16236 605 aa24.07■■□□□ 1.44
COL9A3-214ENST00000490398 TTC5Q8N0Z6 440 aa24.07■■□□□ 1.44
COL9A3-214ENST00000490398 THUMPD2Q9BTF0 503 aaKnown RBP24.06■■□□□ 1.44
COL9A3-214ENST00000490398 CCDC87Q9NVE4 849 aa24.06■■□□□ 1.44
COL9A3-214ENST00000490398 SRP68Q9UHB9 627 aaKnown RBP24.06■■□□□ 1.44
COL9A3-214ENST00000490398 ZBTB1Q9Y2K1 713 aa24.06■■□□□ 1.44
COL9A3-214ENST00000490398 HTATSF1O43719 755 aaKnown RBP24.05■■□□□ 1.44
COL9A3-214ENST00000490398 VSIG10Q8N0Z9 540 aa24.05■■□□□ 1.44
COL9A3-214ENST00000490398 HEG1Q9ULI3 1381 aa24.04■■□□□ 1.44
COL9A3-214ENST00000490398 GYS1P13807 737 aa24.04■■□□□ 1.44
COL9A3-214ENST00000490398 CCDC146Q8IYE0 955 aa24.04■■□□□ 1.44
COL9A3-214ENST00000490398 MIS18AQ9NYP9 233 aa24.04■■□□□ 1.44
COL9A3-214ENST00000490398 PRAMEF22A3QJZ6 481 aa24.03■■□□□ 1.44
COL9A3-214ENST00000490398 ADRA2BP18089 450 aa24.03■■□□□ 1.44
COL9A3-214ENST00000490398 RFC4P35249 363 aa24.03■■□□□ 1.44
COL9A3-214ENST00000490398 SOS1Q07889 1333 aaPredicted RBP24.03■■□□□ 1.44
COL9A3-214ENST00000490398 MAPK8IP3Q9UPT6 1336 aa24.02■■□□□ 1.44
COL9A3-214ENST00000490398 C4AP0C0L4 1744 aa24.01■■□□□ 1.43
COL9A3-214ENST00000490398 NEFMP07197 916 aa24.01■■□□□ 1.43
COL9A3-214ENST00000490398 CCDC184Q52MB2 194 aa24.01■■□□□ 1.43
COL9A3-214ENST00000490398 ADAMTS8Q9UP79 889 aa24.01■■□□□ 1.43
COL9A3-214ENST00000490398 DLG5Q8TDM6 1919 aa24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms