RNA–Protein interactions for RNA: ENST00000490387.1

RAPGEF3-212, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 5

Gene RAPGEF3, Length 699 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-212ENST00000490387 PLEKHO1Q53GL0 409 aaPredicted RBP22.64■■□□□ 1.21
RAPGEF3-212ENST00000490387 SMARCC1Q92922 1105 aaPredicted RBP22.64■■□□□ 1.21
RAPGEF3-212ENST00000490387 SLC16A10Q8TF71 515 aa22.63■■□□□ 1.21
RAPGEF3-212ENST00000490387 PIGBQ92521 554 aa22.63■■□□□ 1.21
RAPGEF3-212ENST00000490387 SGIP1Q9BQI5 828 aa22.63■■□□□ 1.21
RAPGEF3-212ENST00000490387 HMGB2P26583 209 aaKnown RBP22.62■■□□□ 1.21
RAPGEF3-212ENST00000490387 PNNQ9H307 717 aaKnown RBP22.62■■□□□ 1.21
RAPGEF3-212ENST00000490387 TMOD3Q9NYL9 352 aa22.62■■□□□ 1.21
RAPGEF3-212ENST00000490387 MTHFSDQ2M296 383 aaKnown RBP22.61■■□□□ 1.21
RAPGEF3-212ENST00000490387 DLG5Q8TDM6 1919 aa22.61■■□□□ 1.21
RAPGEF3-212ENST00000490387 ARXQ96QS3 562 aa22.6■■□□□ 1.21
RAPGEF3-212ENST00000490387 FHDC1Q9C0D6 1143 aaPredicted RBP22.6■■□□□ 1.21
RAPGEF3-212ENST00000490387 ADAMTS7Q9UKP4 1686 aa22.6■■□□□ 1.21
RAPGEF3-212ENST00000490387 MSH5O43196 834 aa22.59■■□□□ 1.21
RAPGEF3-212ENST00000490387 ZNF530Q6P9A1 599 aaPredicted RBP22.59■■□□□ 1.21
RAPGEF3-212ENST00000490387 CCDC146Q8IYE0 955 aa22.59■■□□□ 1.21
RAPGEF3-212ENST00000490387 RUNDC1Q96C34 613 aa22.59■■□□□ 1.21
RAPGEF3-212ENST00000490387 COL24A1Q17RW2 1714 aa22.59■■□□□ 1.21
RAPGEF3-212ENST00000490387 VIRMAQ69YN4 1812 aaKnown RBP22.59■■□□□ 1.21
RAPGEF3-212ENST00000490387 C4BP0C0L5 1744 aa22.58■■□□□ 1.21
RAPGEF3-212ENST00000490387 POLD1P28340 1107 aa22.58■■□□□ 1.21
RAPGEF3-212ENST00000490387 HSP90AB1P08238 724 aaKnown RBP22.57■■□□□ 1.2
RAPGEF3-212ENST00000490387 FAM9BQ8IZU0 186 aa22.57■■□□□ 1.2
RAPGEF3-212ENST00000490387 GAS2L2Q8NHY3 880 aa22.57■■□□□ 1.2
RAPGEF3-212ENST00000490387 SYT17Q9BSW7 474 aa22.57■■□□□ 1.2
RAPGEF3-212ENST00000490387 SCN11AQ9UI33 1791 aa22.56■■□□□ 1.2
RAPGEF3-212ENST00000490387 MAPK8IP3Q9UPT6 1336 aa22.56■■□□□ 1.2
RAPGEF3-212ENST00000490387 COL23A1Q86Y22 540 aaPredicted RBP22.55■■□□□ 1.2
RAPGEF3-212ENST00000490387 KDM6AO15550 1401 aaPredicted RBP22.55■■□□□ 1.2
RAPGEF3-212ENST00000490387 MAP3K5Q99683 1374 aa22.54■■□□□ 1.2
RAPGEF3-212ENST00000490387 LOC102724428A0A0B4J2F2 783 aa22.54■■□□□ 1.2
RAPGEF3-212ENST00000490387 SIK1P57059 783 aa22.54■■□□□ 1.2
RAPGEF3-212ENST00000490387 NFE2L2Q16236 605 aa22.54■■□□□ 1.2
RAPGEF3-212ENST00000490387 AKAP4Q5JQC9 854 aa22.54■■□□□ 1.2
RAPGEF3-212ENST00000490387 DCAF5Q96JK2 942 aa22.54■■□□□ 1.2
RAPGEF3-212ENST00000490387 AK7Q96M32 723 aa22.54■■□□□ 1.2
RAPGEF3-212ENST00000490387 ASAP1Q9ULH1 1129 aa22.54■■□□□ 1.2
RAPGEF3-212ENST00000490387 NEFMP07197 916 aa22.53■■□□□ 1.2
RAPGEF3-212ENST00000490387 C1orf141Q5JVX7 400 aa22.53■■□□□ 1.2
RAPGEF3-212ENST00000490387 UBR3Q6ZT12 1888 aa22.52■■□□□ 1.2
RAPGEF3-212ENST00000490387 ERVV-2B6SEH9 535 aa22.52■■□□□ 1.2
RAPGEF3-212ENST00000490387 TMPOP42166 694 aaKnown RBP22.52■■□□□ 1.2
RAPGEF3-212ENST00000490387 KLHL34Q8N239 644 aa22.52■■□□□ 1.2
RAPGEF3-212ENST00000490387 FLAD1Q8NFF5 587 aa22.52■■□□□ 1.2
RAPGEF3-212ENST00000490387 ATG3Q9NT62 314 aa22.51■■□□□ 1.19
RAPGEF3-212ENST00000490387 MRC1P22897 1456 aa22.5■■□□□ 1.19
RAPGEF3-212ENST00000490387 GNAT3A8MTJ3 354 aa22.5■■□□□ 1.19
RAPGEF3-212ENST00000490387 APAF1O14727 1248 aa22.5■■□□□ 1.19
RAPGEF3-212ENST00000490387 ATP6V1AP38606 617 aa22.5■■□□□ 1.19
RAPGEF3-212ENST00000490387 YY1P25490 414 aa22.49■■□□□ 1.19
RAPGEF3-212ENST00000490387 MSL1Q68DK7 614 aa22.49■■□□□ 1.19
RAPGEF3-212ENST00000490387 LINC00116Q8NCU8 138 aa22.49■■□□□ 1.19
RAPGEF3-212ENST00000490387 CEMIPQ8WUJ3 1361 aa22.49■■□□□ 1.19
RAPGEF3-212ENST00000490387 SIPA1L3O60292 1781 aaPredicted RBP22.48■■□□□ 1.19
RAPGEF3-212ENST00000490387 HTATSF1O43719 755 aaKnown RBP22.48■■□□□ 1.19
RAPGEF3-212ENST00000490387 PHF14O94880 888 aa22.48■■□□□ 1.19
RAPGEF3-212ENST00000490387 CABP4P57796 275 aa22.48■■□□□ 1.19
RAPGEF3-212ENST00000490387 RNMTO43148 476 aaKnown RBP22.47■■□□□ 1.19
RAPGEF3-212ENST00000490387 ITPK1Q13572 414 aa22.47■■□□□ 1.19
RAPGEF3-212ENST00000490387 LGR6Q9HBX8 967 aa22.47■■□□□ 1.19
RAPGEF3-212ENST00000490387 RRP7AQ9Y3A4 280 aaKnown RBP22.47■■□□□ 1.19
RAPGEF3-212ENST00000490387 RIPK4P57078 832 aa22.46■■□□□ 1.19
RAPGEF3-212ENST00000490387 IL17REQ8NFR9 667 aa22.46■■□□□ 1.19
RAPGEF3-212ENST00000490387 NCBP3Q53F19 620 aaKnown RBP22.45■■□□□ 1.18
RAPGEF3-212ENST00000490387 AMIGO3Q86WK7 504 aa22.45■■□□□ 1.18
RAPGEF3-212ENST00000490387 RBM42Q9BTD8 480 aaKnown RBP22.45■■□□□ 1.18
RAPGEF3-212ENST00000490387 TRIM35Q9UPQ4 493 aa22.45■■□□□ 1.18
RAPGEF3-212ENST00000490387 ZNF831Q5JPB2 1677 aa22.45■■□□□ 1.18
RAPGEF3-212ENST00000490387 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.44■■□□□ 1.18
RAPGEF3-212ENST00000490387 SSFA2P28290 1259 aa22.44■■□□□ 1.18
RAPGEF3-212ENST00000490387 GNPATO15228 680 aa22.43■■□□□ 1.18
RAPGEF3-212ENST00000490387 SMIM5Q71RC9 77 aa22.43■■□□□ 1.18
RAPGEF3-212ENST00000490387 DCTN1Q14203 1278 aa22.42■■□□□ 1.18
RAPGEF3-212ENST00000490387 NEUROD2Q15784 382 aa22.42■■□□□ 1.18
RAPGEF3-212ENST00000490387 MCM10Q7L590 875 aa22.42■■□□□ 1.18
RAPGEF3-212ENST00000490387 COL5A3P25940 1745 aaPredicted RBP22.42■■□□□ 1.18
RAPGEF3-212ENST00000490387 LMOD3Q0VAK6 560 aa22.41■■□□□ 1.18
RAPGEF3-212ENST00000490387 CCDC27Q2M243 656 aa22.41■■□□□ 1.18
RAPGEF3-212ENST00000490387 NFATC2IPQ8NCF5 419 aa22.41■■□□□ 1.18
RAPGEF3-212ENST00000490387 RTF1Q92541 710 aaKnown RBP22.41■■□□□ 1.18
RAPGEF3-212ENST00000490387 CHD4Q14839 1912 aa22.41■■□□□ 1.18
RAPGEF3-212ENST00000490387 SLC4A9Q96Q91 983 aa22.4■■□□□ 1.18
RAPGEF3-212ENST00000490387 SLC52A2Q9HAB3 445 aa22.4■■□□□ 1.18
RAPGEF3-212ENST00000490387 GPR162Q16538 588 aa22.39■■□□□ 1.17
RAPGEF3-212ENST00000490387 NGEFQ8N5V2 710 aa22.39■■□□□ 1.17
RAPGEF3-212ENST00000490387 NLGN2Q8NFZ4 835 aa22.39■■□□□ 1.17
RAPGEF3-212ENST00000490387 THUMPD2Q9BTF0 503 aaKnown RBP22.39■■□□□ 1.17
RAPGEF3-212ENST00000490387 SENP3-EIF4A1A0A087X0R7 540 aa22.38■■□□□ 1.17
RAPGEF3-212ENST00000490387 PELP1Q8IZL8 1130 aaKnown RBP22.38■■□□□ 1.17
RAPGEF3-212ENST00000490387 UTRNP46939 3433 aa22.38■■□□□ 1.17
RAPGEF3-212ENST00000490387 PTCD1O75127 700 aaKnown RBP22.37■■□□□ 1.17
RAPGEF3-212ENST00000490387 RTCBQ9Y3I0 505 aaKnown RBP22.37■■□□□ 1.17
RAPGEF3-212ENST00000490387 CNTNAP4Q9C0A0 1308 aa22.35■■□□□ 1.17
RAPGEF3-212ENST00000490387 RC3H1Q5TC82 1133 aaKnown RBP22.35■■□□□ 1.17
RAPGEF3-212ENST00000490387 WWC1Q8IX03 1113 aa22.35■■□□□ 1.17
RAPGEF3-212ENST00000490387 MYH14Q7Z406 1995 aaKnown RBP22.35■■□□□ 1.17
RAPGEF3-212ENST00000490387 KDM3BQ7LBC6 1761 aa22.35■■□□□ 1.17
RAPGEF3-212ENST00000490387 UBR2Q8IWV8 1755 aa22.35■■□□□ 1.17
RAPGEF3-212ENST00000490387 ZNF521Q96K83 1311 aa22.34■■□□□ 1.17
RAPGEF3-212ENST00000490387 TEFQ10587 303 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms