RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.82□□□□□ -0.04
C9orf3-220ENST00000489318 N4BP2Q86UW6 1770 aaPredicted RBP14.81□□□□□ -0.04
C9orf3-220ENST00000489318 BCAR3O75815 825 aa14.81□□□□□ -0.04
C9orf3-220ENST00000489318 TEFQ10587 303 aa14.81□□□□□ -0.04
C9orf3-220ENST00000489318 VPS72Q15906 364 aa14.81□□□□□ -0.04
C9orf3-220ENST00000489318 TSPYL6Q8N831 410 aa14.81□□□□□ -0.04
C9orf3-220ENST00000489318 C8orf58Q8NAV2 365 aa14.81□□□□□ -0.04
C9orf3-220ENST00000489318 HEG1Q9ULI3 1381 aa14.81□□□□□ -0.04
C9orf3-220ENST00000489318 SSH1Q8WYL5 1049 aa14.8□□□□□ -0.04
C9orf3-220ENST00000489318 C8orf37Q96NL8 207 aa14.8□□□□□ -0.04
C9orf3-220ENST00000489318 SLC52A2Q9HAB3 445 aa14.8□□□□□ -0.04
C9orf3-220ENST00000489318 ATRNO75882 1429 aa14.79□□□□□ -0.04
C9orf3-220ENST00000489318 KIF16BQ96L93 1317 aa14.79□□□□□ -0.04
C9orf3-220ENST00000489318 USP35Q9P2H5 1018 aa14.79□□□□□ -0.04
C9orf3-220ENST00000489318 CICQ96RK0 1608 aaPredicted RBP14.78□□□□□ -0.04
C9orf3-220ENST00000489318 HOXB7P09629 217 aa14.78□□□□□ -0.04
C9orf3-220ENST00000489318 NGLY1Q96IV0 654 aa14.78□□□□□ -0.04
C9orf3-220ENST00000489318 MIS18AQ9NYP9 233 aa14.78□□□□□ -0.04
C9orf3-220ENST00000489318 KCPQ6ZWJ8 1503 aa14.77□□□□□ -0.04
C9orf3-220ENST00000489318 BTBD11A6QL63 1104 aa14.77□□□□□ -0.05
C9orf3-220ENST00000489318 ERVV-2B6SEH9 535 aa14.77□□□□□ -0.05
C9orf3-220ENST00000489318 PLIN1O60240 522 aa14.77□□□□□ -0.05
C9orf3-220ENST00000489318 EIF4A1P60842 406 aaKnown RBP14.77□□□□□ -0.05
C9orf3-220ENST00000489318 IRX6P78412 446 aaPredicted RBP14.77□□□□□ -0.05
C9orf3-220ENST00000489318 PDE3AQ14432 1141 aa14.77□□□□□ -0.05
C9orf3-220ENST00000489318 KRT24Q2M2I5 525 aa14.77□□□□□ -0.05
C9orf3-220ENST00000489318 SMC4Q9NTJ3 1288 aa14.77□□□□□ -0.05
C9orf3-220ENST00000489318 MRPL50Q8N5N7 158 aaKnown RBP14.76□□□□□ -0.05
C9orf3-220ENST00000489318 BCL2L13Q9BXK5 485 aa14.75□□□□□ -0.05
C9orf3-220ENST00000489318 USP21Q9UK80 565 aa14.75□□□□□ -0.05
C9orf3-220ENST00000489318 RGS12O14924 1447 aa14.75□□□□□ -0.05
C9orf3-220ENST00000489318 C20orf194Q5TEA3 1177 aa14.74□□□□□ -0.05
C9orf3-220ENST00000489318 ZKSCAN2Q63HK3 967 aa14.74□□□□□ -0.05
C9orf3-220ENST00000489318 ARHGAP45Q92619 1136 aa14.74□□□□□ -0.05
C9orf3-220ENST00000489318 AFF2P51816 1311 aa14.73□□□□□ -0.05
C9orf3-220ENST00000489318 EXOC5O00471 708 aa14.73□□□□□ -0.05
C9orf3-220ENST00000489318 ELL2O00472 640 aaPredicted RBP14.73□□□□□ -0.05
C9orf3-220ENST00000489318 ZNF790Q6PG37 636 aa14.73□□□□□ -0.05
C9orf3-220ENST00000489318 ZNF831Q5JPB2 1677 aa14.72□□□□□ -0.05
C9orf3-220ENST00000489318 NHSQ6T4R5 1651 aa14.72□□□□□ -0.05
C9orf3-220ENST00000489318 KCNQ3O43525 872 aa14.72□□□□□ -0.05
C9orf3-220ENST00000489318 MS4A1P11836 297 aa14.72□□□□□ -0.05
C9orf3-220ENST00000489318 CABP4P57796 275 aa14.72□□□□□ -0.05
C9orf3-220ENST00000489318 DDB1Q16531 1140 aa14.72□□□□□ -0.05
C9orf3-220ENST00000489318 MEX3CQ5U5Q3 659 aaKnown RBP14.72□□□□□ -0.05
C9orf3-220ENST00000489318 NFATC2IPQ8NCF5 419 aa14.72□□□□□ -0.05
C9orf3-220ENST00000489318 DDX54Q8TDD1 881 aaKnown RBP14.72□□□□□ -0.05
C9orf3-220ENST00000489318 BCL9O00512 1426 aa14.72□□□□□ -0.05
C9orf3-220ENST00000489318 IPO8O15397 1037 aaKnown RBP14.71□□□□□ -0.05
C9orf3-220ENST00000489318 TRIM27P14373 513 aa14.71□□□□□ -0.05
C9orf3-220ENST00000489318 CANXP27824 592 aaKnown RBP14.71□□□□□ -0.05
C9orf3-220ENST00000489318 ATF7IPQ6VMQ6 1270 aa14.71□□□□□ -0.05
C9orf3-220ENST00000489318 FRAT1Q92837 279 aaPredicted RBP14.71□□□□□ -0.05
C9orf3-220ENST00000489318 CRBNQ96SW2 442 aa14.71□□□□□ -0.05
C9orf3-220ENST00000489318 CHMP4AQ9BY43 222 aa14.71□□□□□ -0.05
C9orf3-220ENST00000489318 PXDNLA1KZ92 1463 aa14.7□□□□□ -0.06
C9orf3-220ENST00000489318 ABCC4O15439 1325 aa14.7□□□□□ -0.06
C9orf3-220ENST00000489318 TJP1Q07157 1748 aa14.7□□□□□ -0.06
C9orf3-220ENST00000489318 GIGYF1O75420 1035 aaPredicted RBP14.7□□□□□ -0.06
C9orf3-220ENST00000489318 CCDC30Q5VVM6 783 aa14.7□□□□□ -0.06
C9orf3-220ENST00000489318 EXOC6Q8TAG9 804 aa14.7□□□□□ -0.06
C9orf3-220ENST00000489318 PPP4R2Q9NY27 417 aa14.7□□□□□ -0.06
C9orf3-220ENST00000489318 NOB1Q9ULX3 412 aaKnown RBP14.7□□□□□ -0.06
C9orf3-220ENST00000489318 CCDC9Q9Y3X0 531 aaKnown RBP14.7□□□□□ -0.06
C9orf3-220ENST00000489318 PTPRCP08575 1304 aa14.69□□□□□ -0.06
C9orf3-220ENST00000489318 SBF2Q86WG5 1849 aa14.69□□□□□ -0.06
C9orf3-220ENST00000489318 TRPC5Q9UL62 973 aaPredicted RBP14.69□□□□□ -0.06
C9orf3-220ENST00000489318 ONECUT3O60422 494 aaPredicted RBP14.68□□□□□ -0.06
C9orf3-220ENST00000489318 RLBP1P12271 317 aa14.68□□□□□ -0.06
C9orf3-220ENST00000489318 AAMPQ13685 434 aa14.68□□□□□ -0.06
C9orf3-220ENST00000489318 FAM98CQ17RN3 349 aaKnown RBP14.68□□□□□ -0.06
C9orf3-220ENST00000489318 DZIP1LQ8IYY4 767 aaKnown RBP14.68□□□□□ -0.06
C9orf3-220ENST00000489318 GJD4Q96KN9 370 aaPredicted RBP14.68□□□□□ -0.06
C9orf3-220ENST00000489318 TNNQ9UQP3 1299 aa14.68□□□□□ -0.06
C9orf3-220ENST00000489318 SLC39A6Q13433 755 aa14.67□□□□□ -0.06
C9orf3-220ENST00000489318 HDGFL1Q5TGJ6 251 aa14.67□□□□□ -0.06
C9orf3-220ENST00000489318 TTC5Q8N0Z6 440 aa14.67□□□□□ -0.06
C9orf3-220ENST00000489318 MARCH10Q8NA82 808 aaPredicted RBP14.67□□□□□ -0.06
C9orf3-220ENST00000489318 PANK1Q8TE04 598 aa14.67□□□□□ -0.06
C9orf3-220ENST00000489318 FBXO41Q8TF61 875 aa14.67□□□□□ -0.06
C9orf3-220ENST00000489318 ZNF496Q96IT1 587 aaPredicted RBP14.67□□□□□ -0.06
C9orf3-220ENST00000489318 FMNL2Q96PY5 1086 aa14.67□□□□□ -0.06
C9orf3-220ENST00000489318 STK31Q9BXU1 1019 aa14.67□□□□□ -0.06
C9orf3-220ENST00000489318 API5Q9BZZ5 524 aaKnown RBP14.67□□□□□ -0.06
C9orf3-220ENST00000489318 TMOD3Q9NYL9 352 aa14.67□□□□□ -0.06
C9orf3-220ENST00000489318 RREB1Q92766 1687 aa14.67□□□□□ -0.06
C9orf3-220ENST00000489318 BRWD3Q6RI45 1802 aa14.66□□□□□ -0.06
C9orf3-220ENST00000489318 MVPQ14764 893 aaKnown RBP14.66□□□□□ -0.06
C9orf3-220ENST00000489318 BTAF1O14981 1849 aa14.65□□□□□ -0.06
C9orf3-220ENST00000489318 TCERG1O14776 1098 aaKnown RBP14.65□□□□□ -0.06
C9orf3-220ENST00000489318 SLC4A2P04920 1241 aa14.65□□□□□ -0.06
C9orf3-220ENST00000489318 FTSJ3Q8IY81 847 aaKnown RBP14.65□□□□□ -0.06
C9orf3-220ENST00000489318 COL5A3P25940 1745 aaPredicted RBP14.65□□□□□ -0.06
C9orf3-220ENST00000489318 NUP188Q5SRE5 1749 aa14.64□□□□□ -0.07
C9orf3-220ENST00000489318 SNRPA1P09661 255 aaKnown RBP14.64□□□□□ -0.07
C9orf3-220ENST00000489318 PIGBQ92521 554 aa14.64□□□□□ -0.07
C9orf3-220ENST00000489318 COG6Q9Y2V7 657 aa14.64□□□□□ -0.07
C9orf3-220ENST00000489318 ERBB4Q15303 1308 aa14.64□□□□□ -0.07
C9orf3-220ENST00000489318 PRAMEF22A3QJZ6 481 aa14.63□□□□□ -0.07
C9orf3-220ENST00000489318 FLIIQ13045 1269 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms