RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 KIF16BQ96L93 1317 aa15.52■□□□□ 0.07
HDAC6-230ENST00000488543 VIRMAQ69YN4 1812 aaKnown RBP15.51■□□□□ 0.07
HDAC6-230ENST00000488543 CYP27B1O15528 508 aa15.51■□□□□ 0.07
HDAC6-230ENST00000488543 MVPQ14764 893 aaKnown RBP15.51■□□□□ 0.07
HDAC6-230ENST00000488543 JCADQ9P266 1359 aa15.51■□□□□ 0.07
HDAC6-230ENST00000488543 TCERG1O14776 1098 aaKnown RBP15.5■□□□□ 0.07
HDAC6-230ENST00000488543 MS4A1P11836 297 aa15.5■□□□□ 0.07
HDAC6-230ENST00000488543 CENPQQ7L2Z9 268 aaPredicted RBP15.5■□□□□ 0.07
HDAC6-230ENST00000488543 C8orf37Q96NL8 207 aa15.5■□□□□ 0.07
HDAC6-230ENST00000488543 IL2RBP14784 551 aa15.49■□□□□ 0.07
HDAC6-230ENST00000488543 BACH2Q9BYV9 841 aa15.49■□□□□ 0.07
HDAC6-230ENST00000488543 TSPYL4Q9UJ04 414 aa15.49■□□□□ 0.07
HDAC6-230ENST00000488543 SPG7Q9UQ90 795 aa15.49■□□□□ 0.07
HDAC6-230ENST00000488543 RNMTO43148 476 aaKnown RBP15.49■□□□□ 0.07
HDAC6-230ENST00000488543 PHKG2P15735 406 aa15.49■□□□□ 0.07
HDAC6-230ENST00000488543 AAMPQ13685 434 aa15.49■□□□□ 0.07
HDAC6-230ENST00000488543 CEMIPQ8WUJ3 1361 aa15.48■□□□□ 0.07
HDAC6-230ENST00000488543 IPO8O15397 1037 aaKnown RBP15.48■□□□□ 0.07
HDAC6-230ENST00000488543 FTSJ3Q8IY81 847 aaKnown RBP15.48■□□□□ 0.07
HDAC6-230ENST00000488543 COL14A1Q05707 1796 aaKnown RBP15.48■□□□□ 0.07
HDAC6-230ENST00000488543 TAF7Q15545 349 aaPredicted RBP15.48■□□□□ 0.07
HDAC6-230ENST00000488543 DDX54Q8TDD1 881 aaKnown RBP15.48■□□□□ 0.07
HDAC6-230ENST00000488543 NGLY1Q96IV0 654 aa15.48■□□□□ 0.07
HDAC6-230ENST00000488543 ZCRB1Q8TBF4 217 aaKnown RBP15.47■□□□□ 0.07
HDAC6-230ENST00000488543 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.47■□□□□ 0.073e-6■■■□□ 15.9
HDAC6-230ENST00000488543 KCNQ3O43525 872 aa15.46■□□□□ 0.07
HDAC6-230ENST00000488543 IGHDP01880 384 aa15.46■□□□□ 0.07
HDAC6-230ENST00000488543 IFNL2Q8IZJ0 200 aa15.46■□□□□ 0.07
HDAC6-230ENST00000488543 KDM3BQ7LBC6 1761 aa15.46■□□□□ 0.07
HDAC6-230ENST00000488543 TMEM57Q8N5G2 664 aa15.46■□□□□ 0.07
HDAC6-230ENST00000488543 ARHGAP45Q92619 1136 aa15.46■□□□□ 0.07
HDAC6-230ENST00000488543 OVOS2A0A0G2JMS6 1433 aa15.46■□□□□ 0.07
HDAC6-230ENST00000488543 ADAMTS7Q9UKP4 1686 aa15.46■□□□□ 0.07
HDAC6-230ENST00000488543 TEFQ10587 303 aa15.45■□□□□ 0.06
HDAC6-230ENST00000488543 PCDHB15Q9Y5E8 787 aa15.45■□□□□ 0.06
HDAC6-230ENST00000488543 CCDC9Q9Y3X0 531 aaKnown RBP15.44■□□□□ 0.06
HDAC6-230ENST00000488543 LRP6O75581 1613 aa15.44■□□□□ 0.06
HDAC6-230ENST00000488543 NFATC2IPQ8NCF5 419 aa15.44■□□□□ 0.06
HDAC6-230ENST00000488543 BABAM1Q9NWV8 329 aa15.44■□□□□ 0.06
HDAC6-230ENST00000488543 SIPA1L3O60292 1781 aaPredicted RBP15.44■□□□□ 0.06
HDAC6-230ENST00000488543 KDM6AO15550 1401 aaPredicted RBP15.43■□□□□ 0.06
HDAC6-230ENST00000488543 ABCC4O15439 1325 aa15.43■□□□□ 0.06
HDAC6-230ENST00000488543 BTBD11A6QL63 1104 aa15.43■□□□□ 0.06
HDAC6-230ENST00000488543 SLC4A3P48751 1232 aa15.43■□□□□ 0.06
HDAC6-230ENST00000488543 ITPRIPQ8IWB1 547 aa15.43■□□□□ 0.06
HDAC6-230ENST00000488543 PODXL2Q9NZ53 605 aa15.43■□□□□ 0.06
HDAC6-230ENST00000488543 DDX19BQ9UMR2 479 aa15.43■□□□□ 0.06
HDAC6-230ENST00000488543 PLCH1Q4KWH8 1693 aa15.43■□□□□ 0.06
HDAC6-230ENST00000488543 RGS12O14924 1447 aa15.42■□□□□ 0.06
HDAC6-230ENST00000488543 SPATA31A1Q5TZJ5 1347 aa15.42■□□□□ 0.06
HDAC6-230ENST00000488543 SPATA31A6Q5VVP1 1343 aa15.42■□□□□ 0.06
HDAC6-230ENST00000488543 SLIT2O94813 1529 aa15.42■□□□□ 0.06
HDAC6-230ENST00000488543 PKD1L3Q7Z443 1732 aa15.42■□□□□ 0.06
HDAC6-230ENST00000488543 SLC39A6Q13433 755 aa15.41■□□□□ 0.06
HDAC6-230ENST00000488543 UNC5CLQ8IV45 518 aa15.41■□□□□ 0.06
HDAC6-230ENST00000488543 DCAF5Q96JK2 942 aa15.41■□□□□ 0.06
HDAC6-230ENST00000488543 RTL5Q5HYW3 569 aaPredicted RBP15.41■□□□□ 0.06
HDAC6-230ENST00000488543 NECTIN2Q92692 538 aa15.41■□□□□ 0.06
HDAC6-230ENST00000488543 PCDH11XQ9BZA7 1347 aa15.41■□□□□ 0.06
HDAC6-230ENST00000488543 PCDH11YQ9BZA8 1340 aa15.41■□□□□ 0.06
HDAC6-230ENST00000488543 SLC52A2Q9HAB3 445 aa15.4■□□□□ 0.06
HDAC6-230ENST00000488543 ZBTB40Q9NUA8 1239 aa15.4■□□□□ 0.06
HDAC6-230ENST00000488543 BCL9LQ86UU0 1499 aa15.4■□□□□ 0.06
HDAC6-230ENST00000488543 SCN11AQ9UI33 1791 aa15.4■□□□□ 0.06
HDAC6-230ENST00000488543 SPATA31A5Q5VU36 1347 aa15.4■□□□□ 0.06
HDAC6-230ENST00000488543 SPATA31A7Q8IWB4 1347 aa15.4■□□□□ 0.06
HDAC6-230ENST00000488543 RGS3P49796 1198 aa15.39■□□□□ 0.05
HDAC6-230ENST00000488543 MEX3CQ5U5Q3 659 aaKnown RBP15.39■□□□□ 0.05
HDAC6-230ENST00000488543 FNBP4Q8N3X1 1017 aaPredicted RBP15.39■□□□□ 0.05
HDAC6-230ENST00000488543 API5Q9BZZ5 524 aaKnown RBP15.39■□□□□ 0.05
HDAC6-230ENST00000488543 CACNA1FO60840 1977 aa15.39■□□□□ 0.05
HDAC6-230ENST00000488543 EIF4A1P60842 406 aaKnown RBP15.39■□□□□ 0.05
HDAC6-230ENST00000488543 USP21Q9UK80 565 aa15.38■□□□□ 0.05
HDAC6-230ENST00000488543 PLEKHG2Q9H7P9 1386 aa15.38■□□□□ 0.05
HDAC6-230ENST00000488543 PRAMEF22A3QJZ6 481 aa15.38■□□□□ 0.05
HDAC6-230ENST00000488543 EXOC5O00471 708 aa15.38■□□□□ 0.05
HDAC6-230ENST00000488543 DISP2A7MBM2 1401 aa15.38■□□□□ 0.05
HDAC6-230ENST00000488543 NRAPQ86VF7 1730 aa15.38■□□□□ 0.05
HDAC6-230ENST00000488543 EIF5BO60841 1220 aaKnown RBP15.37■□□□□ 0.05
HDAC6-230ENST00000488543 CABP4P57796 275 aa15.37■□□□□ 0.05
HDAC6-230ENST00000488543 FAM98CQ17RN3 349 aaKnown RBP15.37■□□□□ 0.05
HDAC6-230ENST00000488543 SOS1Q07889 1333 aaPredicted RBP15.37■□□□□ 0.05
HDAC6-230ENST00000488543 PARP4Q9UKK3 1724 aaKnown RBP15.37■□□□□ 0.05
HDAC6-230ENST00000488543 ZBTB7BO15156 539 aaPredicted RBP15.37■□□□□ 0.05
HDAC6-230ENST00000488543 HSP90AB1P08238 724 aaKnown RBP15.37■□□□□ 0.05
HDAC6-230ENST00000488543 NKX1-1Q15270 411 aaPredicted RBP15.36■□□□□ 0.05
HDAC6-230ENST00000488543 PTPRCP08575 1304 aa15.36■□□□□ 0.05
HDAC6-230ENST00000488543 SLC4A2P04920 1241 aa15.36■□□□□ 0.05
HDAC6-230ENST00000488543 G2E3Q7L622 706 aa15.36■□□□□ 0.05
HDAC6-230ENST00000488543 EIF2S2P20042 333 aaKnown RBP15.35■□□□□ 0.05
HDAC6-230ENST00000488543 ZNF790Q6PG37 636 aa15.35■□□□□ 0.05
HDAC6-230ENST00000488543 RWDD1Q9H446 243 aaPredicted RBP15.35■□□□□ 0.05
HDAC6-230ENST00000488543 HDAC1Q13547 482 aaPredicted RBP15.35■□□□□ 0.05
HDAC6-230ENST00000488543 VPS72Q15906 364 aa15.35■□□□□ 0.05
HDAC6-230ENST00000488543 THRAP3Q9Y2W1 955 aaKnown RBP15.35■□□□□ 0.05
HDAC6-230ENST00000488543 SHANK3Q9BYB0 1731 aa15.34■□□□□ 0.05
HDAC6-230ENST00000488543 AFF2P51816 1311 aa15.34■□□□□ 0.05
HDAC6-230ENST00000488543 DDB1Q16531 1140 aa15.34■□□□□ 0.05
HDAC6-230ENST00000488543 INTS3Q68E01 1043 aaKnown RBP15.34■□□□□ 0.05
HDAC6-230ENST00000488543 N4BP2Q86UW6 1770 aaPredicted RBP15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms