RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 PRKAR2BP31323 418 aa18.67■□□□□ 0.58
SYNE1-226ENST00000488376 RNMTO43148 476 aaKnown RBP18.66■□□□□ 0.58
SYNE1-226ENST00000488376 U2AF1L5P0DN76 240 aaPredicted RBP18.66■□□□□ 0.58
SYNE1-226ENST00000488376 U2AF1Q01081 240 aaKnown RBP eCLIP18.66■□□□□ 0.58
SYNE1-226ENST00000488376 TAF1LQ8IZX4 1826 aa18.65■□□□□ 0.58
SYNE1-226ENST00000488376 COL23A1Q86Y22 540 aaPredicted RBP18.65■□□□□ 0.58
SYNE1-226ENST00000488376 SGIP1Q9BQI5 828 aa18.65■□□□□ 0.58
SYNE1-226ENST00000488376 C4BP0C0L5 1744 aa18.65■□□□□ 0.58
SYNE1-226ENST00000488376 SCN11AQ9UI33 1791 aa18.65■□□□□ 0.58
SYNE1-226ENST00000488376 MRC1P22897 1456 aa18.65■□□□□ 0.58
SYNE1-226ENST00000488376 ADAMTS7Q9UKP4 1686 aa18.64■□□□□ 0.57
SYNE1-226ENST00000488376 ATP6V1AP38606 617 aa18.64■□□□□ 0.57
SYNE1-226ENST00000488376 RBM42Q9BTD8 480 aaKnown RBP18.64■□□□□ 0.57
SYNE1-226ENST00000488376 MTFR1LQ9H019 292 aa18.64■□□□□ 0.57
SYNE1-226ENST00000488376 QSER1Q2KHR3 1735 aa18.63■□□□□ 0.57
SYNE1-226ENST00000488376 SLC52A2Q9HAB3 445 aa18.63■□□□□ 0.57
SYNE1-226ENST00000488376 NUDCQ9Y266 331 aa18.63■□□□□ 0.57
SYNE1-226ENST00000488376 PTCD1O75127 700 aaKnown RBP18.62■□□□□ 0.57
SYNE1-226ENST00000488376 MAP3K5Q99683 1374 aa18.62■□□□□ 0.57
SYNE1-226ENST00000488376 SLC39A6Q13433 755 aa18.61■□□□□ 0.57
SYNE1-226ENST00000488376 RALBP1Q15311 655 aa18.61■□□□□ 0.57
SYNE1-226ENST00000488376 IL17REQ8NFR9 667 aa18.61■□□□□ 0.57
SYNE1-226ENST00000488376 PPP1R1BQ9UD71 204 aaPredicted RBP18.61■□□□□ 0.57
SYNE1-226ENST00000488376 MSH5O43196 834 aa18.6■□□□□ 0.57
SYNE1-226ENST00000488376 PHF14O94880 888 aa18.6■□□□□ 0.57
SYNE1-226ENST00000488376 AK7Q96M32 723 aa18.6■□□□□ 0.57
SYNE1-226ENST00000488376 GNAT3A8MTJ3 354 aa18.59■□□□□ 0.57
SYNE1-226ENST00000488376 FCHSD2O94868 740 aa18.59■□□□□ 0.57
SYNE1-226ENST00000488376 MSL1Q68DK7 614 aa18.59■□□□□ 0.57
SYNE1-226ENST00000488376 GAS2L2Q8NHY3 880 aa18.59■□□□□ 0.57
SYNE1-226ENST00000488376 MYBBP1AQ9BQG0 1328 aaKnown RBP18.57■□□□□ 0.56
SYNE1-226ENST00000488376 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.57■□□□□ 0.56
SYNE1-226ENST00000488376 GNPATO15228 680 aa18.57■□□□□ 0.56
SYNE1-226ENST00000488376 KCPQ6ZWJ8 1503 aa18.57■□□□□ 0.56
SYNE1-226ENST00000488376 UBR3Q6ZT12 1888 aa18.56■□□□□ 0.56
SYNE1-226ENST00000488376 SLC16A10Q8TF71 515 aa18.56■□□□□ 0.56
SYNE1-226ENST00000488376 PLEKHF1Q96S99 279 aa18.56■□□□□ 0.56
SYNE1-226ENST00000488376 TJP1Q07157 1748 aa18.56■□□□□ 0.56
SYNE1-226ENST00000488376 ZNF831Q5JPB2 1677 aa18.56■□□□□ 0.56
SYNE1-226ENST00000488376 VIRMAQ69YN4 1812 aaKnown RBP18.56■□□□□ 0.56
SYNE1-226ENST00000488376 CEMIPQ8WUJ3 1361 aa18.55■□□□□ 0.56
SYNE1-226ENST00000488376 COL5A3P25940 1745 aaPredicted RBP18.55■□□□□ 0.56
SYNE1-226ENST00000488376 FHDC1Q9C0D6 1143 aaPredicted RBP18.55■□□□□ 0.56
SYNE1-226ENST00000488376 DCTN1Q14203 1278 aa18.54■□□□□ 0.56
SYNE1-226ENST00000488376 MCM10Q7L590 875 aa18.54■□□□□ 0.56
SYNE1-226ENST00000488376 ARXQ96QS3 562 aa18.54■□□□□ 0.56
SYNE1-226ENST00000488376 PRKRIP1Q9H875 184 aaPredicted RBP18.54■□□□□ 0.56
SYNE1-226ENST00000488376 COL24A1Q17RW2 1714 aa18.54■□□□□ 0.56
SYNE1-226ENST00000488376 DNAJC10Q8IXB1 793 aa18.53■□□□□ 0.56
SYNE1-226ENST00000488376 CNTNAP4Q9C0A0 1308 aa18.52■□□□□ 0.56
SYNE1-226ENST00000488376 KCNQ3O43525 872 aa18.52■□□□□ 0.56
SYNE1-226ENST00000488376 SSFA2P28290 1259 aa18.52■□□□□ 0.56
SYNE1-226ENST00000488376 CRKLP46109 303 aaKnown RBP18.52■□□□□ 0.56
SYNE1-226ENST00000488376 TEFQ10587 303 aa18.52■□□□□ 0.56
SYNE1-226ENST00000488376 SIPA1L3O60292 1781 aaPredicted RBP18.52■□□□□ 0.55
SYNE1-226ENST00000488376 CICQ96RK0 1608 aaPredicted RBP18.52■□□□□ 0.55
SYNE1-226ENST00000488376 ZNF316A6NFI3 1004 aaPredicted RBP18.51■□□□□ 0.55
SYNE1-226ENST00000488376 FLAD1Q8NFF5 587 aa18.51■□□□□ 0.55
SYNE1-226ENST00000488376 RC3H1Q5TC82 1133 aaKnown RBP18.5■□□□□ 0.55
SYNE1-226ENST00000488376 INTS5Q6P9B9 1019 aaKnown RBP18.5■□□□□ 0.55
SYNE1-226ENST00000488376 ZNF496Q96IT1 587 aaPredicted RBP18.5■□□□□ 0.55
SYNE1-226ENST00000488376 SYT17Q9BSW7 474 aa18.5■□□□□ 0.55
SYNE1-226ENST00000488376 UBR2Q8IWV8 1755 aa18.5■□□□□ 0.55
SYNE1-226ENST00000488376 POLD1P28340 1107 aa18.49■□□□□ 0.55
SYNE1-226ENST00000488376 RTCBQ9Y3I0 505 aaKnown RBP18.49■□□□□ 0.55
SYNE1-226ENST00000488376 MYH14Q7Z406 1995 aaKnown RBP18.49■□□□□ 0.55
SYNE1-226ENST00000488376 RPS6KA4O75676 772 aa18.48■□□□□ 0.55
SYNE1-226ENST00000488376 CYP19A1P11511 503 aaPredicted RBP18.48■□□□□ 0.55
SYNE1-226ENST00000488376 HMGB2P26583 209 aaKnown RBP18.48■□□□□ 0.55
SYNE1-226ENST00000488376 ZNF790Q6PG37 636 aa18.48■□□□□ 0.55
SYNE1-226ENST00000488376 KLHL34Q8N239 644 aa18.48■□□□□ 0.55
SYNE1-226ENST00000488376 ARHGEF1Q92888 912 aaKnown RBP18.48■□□□□ 0.55
SYNE1-226ENST00000488376 THUMPD2Q9BTF0 503 aaKnown RBP18.48■□□□□ 0.55
SYNE1-226ENST00000488376 BTBD11A6QL63 1104 aa18.46■□□□□ 0.55
SYNE1-226ENST00000488376 NFE2L2Q16236 605 aa18.46■□□□□ 0.55
SYNE1-226ENST00000488376 TRAPPC3LQ5T215 181 aa18.46■□□□□ 0.55
SYNE1-226ENST00000488376 CCDC146Q8IYE0 955 aa18.46■□□□□ 0.55
SYNE1-226ENST00000488376 TTC5Q8N0Z6 440 aa18.46■□□□□ 0.55
SYNE1-226ENST00000488376 NLGN2Q8NFZ4 835 aa18.46■□□□□ 0.55
SYNE1-226ENST00000488376 RTF1Q92541 710 aaKnown RBP18.46■□□□□ 0.55
SYNE1-226ENST00000488376 CCDC184Q52MB2 194 aa18.45■□□□□ 0.54
SYNE1-226ENST00000488376 CCDC87Q9NVE4 849 aa18.45■□□□□ 0.54
SYNE1-226ENST00000488376 MIS18AQ9NYP9 233 aa18.45■□□□□ 0.54
SYNE1-226ENST00000488376 SRP68Q9UHB9 627 aaKnown RBP18.45■□□□□ 0.54
SYNE1-226ENST00000488376 HEG1Q9ULI3 1381 aa18.44■□□□□ 0.54
SYNE1-226ENST00000488376 C4AP0C0L4 1744 aa18.44■□□□□ 0.54
SYNE1-226ENST00000488376 PRAMEF22A3QJZ6 481 aa18.44■□□□□ 0.54
SYNE1-226ENST00000488376 HTATSF1O43719 755 aaKnown RBP18.44■□□□□ 0.54
SYNE1-226ENST00000488376 VSIG10Q8N0Z9 540 aa18.44■□□□□ 0.54
SYNE1-226ENST00000488376 ZBTB1Q9Y2K1 713 aa18.44■□□□□ 0.54
SYNE1-226ENST00000488376 MAPK8IP3Q9UPT6 1336 aa18.44■□□□□ 0.54
SYNE1-226ENST00000488376 GYS1P13807 737 aa18.43■□□□□ 0.54
SYNE1-226ENST00000488376 ADAMTS8Q9UP79 889 aa18.43■□□□□ 0.54
SYNE1-226ENST00000488376 RRP7AQ9Y3A4 280 aaKnown RBP18.43■□□□□ 0.54
SYNE1-226ENST00000488376 SOS1Q07889 1333 aaPredicted RBP18.43■□□□□ 0.54
SYNE1-226ENST00000488376 DLG5Q8TDM6 1919 aa18.43■□□□□ 0.54
SYNE1-226ENST00000488376 NEFMP07197 916 aa18.42■□□□□ 0.54
SYNE1-226ENST00000488376 ADRA2BP18089 450 aa18.42■□□□□ 0.54
SYNE1-226ENST00000488376 RFC4P35249 363 aa18.41■□□□□ 0.54
SYNE1-226ENST00000488376 FMNL2Q96PY5 1086 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms