RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 SPATA31C2B4DYI2 1134 aa9.08□□□□□ -0.96
SMC4-220ENST00000488017 PIK3R2O00459 728 aa9.08□□□□□ -0.96
SMC4-220ENST00000488017 POU4F2Q12837 409 aa9.08□□□□□ -0.96
SMC4-220ENST00000488017 NBPF10Q6P3W6 841 aaKnown RBP9.08□□□□□ -0.96
SMC4-220ENST00000488017 CYP2U1Q7Z449 544 aa9.08□□□□□ -0.96
SMC4-220ENST00000488017 NBPF15Q8N660 670 aa9.08□□□□□ -0.96
SMC4-220ENST00000488017 KLRG1Q96E93 195 aa9.08□□□□□ -0.96
SMC4-220ENST00000488017 CLN3Q13286 438 aa9.07□□□□□ -0.96
SMC4-220ENST00000488017 ZNF592Q92610 1267 aa9.07□□□□□ -0.96
SMC4-220ENST00000488017 NUCKS1Q9H1E3 243 aaKnown RBP9.07□□□□□ -0.96
SMC4-220ENST00000488017 GOPCQ9HD26 462 aa9.07□□□□□ -0.96
SMC4-220ENST00000488017 CHRNA4P43681 627 aa9.06□□□□□ -0.96
SMC4-220ENST00000488017 GNB5O14775 395 aa9.05□□□□□ -0.96
SMC4-220ENST00000488017 FBXO45P0C2W1 286 aa9.05□□□□□ -0.96
SMC4-220ENST00000488017 KRTAP4-8A0A0G2JLE6 195 aa9.04□□□□□ -0.96
SMC4-220ENST00000488017 F11P03951 625 aa9.04□□□□□ -0.96
SMC4-220ENST00000488017 DOC2BQ14184 412 aa9.04□□□□□ -0.96
SMC4-220ENST00000488017 GOLGA6L1Q8N7Z2 621 aa9.04□□□□□ -0.96
SMC4-220ENST00000488017 TIMMDC1Q9NPL8 285 aa9.04□□□□□ -0.96
SMC4-220ENST00000488017 WASLO00401 505 aaPredicted RBP9.03□□□□□ -0.96
SMC4-220ENST00000488017 TAS1R3Q7RTX0 852 aa9.03□□□□□ -0.96
SMC4-220ENST00000488017 GJD4Q96KN9 370 aaPredicted RBP9.03□□□□□ -0.96
SMC4-220ENST00000488017 PCMTD1Q96MG8 357 aaPredicted RBP9.03□□□□□ -0.96
SMC4-220ENST00000488017 TRAK2O60296 914 aa9.02□□□□□ -0.97
SMC4-220ENST00000488017 SCO2A0A1W2PP80 73 aa9.01□□□□□ -0.97
SMC4-220ENST00000488017 SCTRP47872 440 aa9.01□□□□□ -0.97
SMC4-220ENST00000488017 NR1H3Q13133 447 aa9.01□□□□□ -0.97
SMC4-220ENST00000488017 FOXD4L6Q3SYB3 417 aaPredicted RBP9.01□□□□□ -0.97
SMC4-220ENST00000488017 FOXD4L3Q6VB84 417 aaPredicted RBP9.01□□□□□ -0.97
SMC4-220ENST00000488017 KRTAP19-1Q8IUB9 90 aa9.01□□□□□ -0.97
SMC4-220ENST00000488017 OSBPL3Q9H4L5 887 aa9.01□□□□□ -0.97
SMC4-220ENST00000488017 ESF1Q9H501 851 aaKnown RBP9.01□□□□□ -0.97
SMC4-220ENST00000488017 NOP53Q9NZM5 478 aaKnown RBP9.01□□□□□ -0.97
SMC4-220ENST00000488017 PHF24Q9UPV7 400 aa9.01□□□□□ -0.97
SMC4-220ENST00000488017 ZNF330Q9Y3S2 320 aaPredicted RBP9.01□□□□□ -0.97
SMC4-220ENST00000488017 THBS1P07996 1170 aa9□□□□□ -0.97
SMC4-220ENST00000488017 AMPD1P23109 780 aa9□□□□□ -0.97
SMC4-220ENST00000488017 ARHGEF10LQ9HCE6 1279 aa9□□□□□ -0.97
SMC4-220ENST00000488017 PCDHB11Q9Y5F2 797 aa9□□□□□ -0.97
SMC4-220ENST00000488017 GNRH1P01148 92 aa8.99□□□□□ -0.97
SMC4-220ENST00000488017 SLCO4C1Q6ZQN7 724 aa8.99□□□□□ -0.97
SMC4-220ENST00000488017 LBRQ14739 615 aaKnown RBP8.98□□□□□ -0.97
SMC4-220ENST00000488017 ARTNQ5T4W7 220 aa8.98□□□□□ -0.97
SMC4-220ENST00000488017 ESYT1Q9BSJ8 1104 aa8.98□□□□□ -0.97
SMC4-220ENST00000488017 ZFP64Q9NPA5 681 aa8.98□□□□□ -0.97
SMC4-220ENST00000488017 BTBD6Q96KE9 485 aa8.97□□□□□ -0.97
SMC4-220ENST00000488017 A0A1B0GTH6 734 aa8.96□□□□□ -0.98
SMC4-220ENST00000488017 SOCS7O14512 581 aa8.96□□□□□ -0.98
SMC4-220ENST00000488017 DGKGP49619 791 aa8.96□□□□□ -0.98
SMC4-220ENST00000488017 CNKSR1Q969H4 720 aa8.96□□□□□ -0.98
SMC4-220ENST00000488017 GATA4P43694 442 aa8.95□□□□□ -0.98
SMC4-220ENST00000488017 CENPCQ03188 943 aa8.95□□□□□ -0.98
SMC4-220ENST00000488017 IL2RAP01589 272 aa8.94□□□□□ -0.98
SMC4-220ENST00000488017 UBAP2LQ14157 1087 aaKnown RBP8.94□□□□□ -0.98
SMC4-220ENST00000488017 RSPO4Q2I0M5 234 aaPredicted RBP8.94□□□□□ -0.98
SMC4-220ENST00000488017 ZSCAN10Q96SZ4 725 aaPredicted RBP8.94□□□□□ -0.98
SMC4-220ENST00000488017 GGA1Q9UJY5 639 aa8.94□□□□□ -0.98
SMC4-220ENST00000488017 HRH3Q9Y5N1 445 aa8.94□□□□□ -0.98
SMC4-220ENST00000488017 C2CD2LO14523 706 aa8.93□□□□□ -0.98
SMC4-220ENST00000488017 MYCP01106 439 aaPredicted RBP8.93□□□□□ -0.98
SMC4-220ENST00000488017 EPXP11678 715 aa8.93□□□□□ -0.98
SMC4-220ENST00000488017 BMP4P12644 408 aa8.93□□□□□ -0.98
SMC4-220ENST00000488017 GTF2E1P29083 439 aaPredicted RBP8.93□□□□□ -0.98
SMC4-220ENST00000488017 XAGE2Q96GT9 111 aa8.93□□□□□ -0.98
SMC4-220ENST00000488017 GOLGA2P5Q9HBQ8 144 aa8.93□□□□□ -0.98
SMC4-220ENST00000488017 RAB6BQ9NRW1 208 aa8.93□□□□□ -0.98
SMC4-220ENST00000488017 CSB-PGBD3P0DP91 1061 aa8.92□□□□□ -0.98
SMC4-220ENST00000488017 GNASQ5JWF2 1037 aa8.92□□□□□ -0.98
SMC4-220ENST00000488017 NKAPLQ5M9Q1 402 aa8.92□□□□□ -0.98
SMC4-220ENST00000488017 PGBD3Q8N328 593 aa8.92□□□□□ -0.98
SMC4-220ENST00000488017 BANK1Q8NDB2 785 aa8.92□□□□□ -0.98
SMC4-220ENST00000488017 GPAMQ9HCL2 828 aa8.92□□□□□ -0.98
SMC4-220ENST00000488017 ATXN7L1Q9ULK2 861 aaPredicted RBP8.92□□□□□ -0.98
SMC4-220ENST00000488017 NBPF11Q86T75 865 aa8.91□□□□□ -0.98
SMC4-220ENST00000488017 FHDC1Q9C0D6 1143 aaPredicted RBP8.91□□□□□ -0.98
SMC4-220ENST00000488017 NDUFB9Q9Y6M9 179 aa8.91□□□□□ -0.98
SMC4-220ENST00000488017 PHKA2P46019 1235 aa8.9□□□□□ -0.98
SMC4-220ENST00000488017 ESCO1Q5FWF5 840 aa8.9□□□□□ -0.98
SMC4-220ENST00000488017 EFHC2Q5JST6 749 aa8.9□□□□□ -0.98
SMC4-220ENST00000488017 APBB1O00213 710 aa8.89□□□□□ -0.99
SMC4-220ENST00000488017 GPR37L1O60883 481 aa8.89□□□□□ -0.99
SMC4-220ENST00000488017 TMEM214Q6NUQ4 689 aaKnown RBP8.89□□□□□ -0.99
SMC4-220ENST00000488017 MSX1P28360 303 aa8.88□□□□□ -0.99
SMC4-220ENST00000488017 C4orf17Q53FE4 359 aa8.88□□□□□ -0.99
SMC4-220ENST00000488017 RNF135Q8IUD6 432 aa8.88□□□□□ -0.99
SMC4-220ENST00000488017 CEP126Q9P2H0 1117 aa8.88□□□□□ -0.99
SMC4-220ENST00000488017 ARAFP10398 606 aa8.87□□□□□ -0.99
SMC4-220ENST00000488017 CCDC85AQ96PX6 553 aaPredicted RBP8.87□□□□□ -0.99
SMC4-220ENST00000488017 RUBCNLQ9H714 662 aa8.87□□□□□ -0.99
SMC4-220ENST00000488017 NDFIP2Q9NV92 336 aa8.87□□□□□ -0.99
SMC4-220ENST00000488017 FGFR3P22607 806 aa8.86□□□□□ -0.99
SMC4-220ENST00000488017 CTBSQ01459 385 aa8.86□□□□□ -0.99
SMC4-220ENST00000488017 RHBDD1Q8TEB9 315 aa8.86□□□□□ -0.99
SMC4-220ENST00000488017 CDCA7Q9BWT1 371 aaPredicted RBP8.86□□□□□ -0.99
SMC4-220ENST00000488017 CRISPLD1Q9H336 500 aa8.86□□□□□ -0.99
SMC4-220ENST00000488017 DYRK3O43781 588 aa8.85□□□□□ -0.99
SMC4-220ENST00000488017 SPATA31C1P0DKV0 1188 aa8.85□□□□□ -0.99
SMC4-220ENST00000488017 CHSY3Q70JA7 882 aa8.85□□□□□ -0.99
SMC4-220ENST00000488017 PPARGC1BQ86YN6 1023 aaKnown RBP8.85□□□□□ -0.99
SMC4-220ENST00000488017 MTMR14Q8NCE2 650 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms