RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 ZKSCAN5Q9Y2L8 839 aa14.87□□□□□ -0.03
COL3A1-206ENST00000487010 PEAK1Q9H792 1746 aa14.87□□□□□ -0.03
COL3A1-206ENST00000487010 ANAPC15P60006 121 aa14.86□□□□□ -0.03
COL3A1-206ENST00000487010 INTS4Q96HW7 963 aaKnown RBP14.86□□□□□ -0.03
COL3A1-206ENST00000487010 EXOC6BQ9Y2D4 811 aa14.86□□□□□ -0.03
COL3A1-206ENST00000487010 OVOS2A0A0J9YW53 1432 aa14.86□□□□□ -0.03
COL3A1-206ENST00000487010 OVOS2Q6IE36 1432 aa14.86□□□□□ -0.03
COL3A1-206ENST00000487010 MLECQ14165 292 aa14.86□□□□□ -0.03
COL3A1-206ENST00000487010 HSP90AB2PQ58FF8 381 aa14.86□□□□□ -0.03
COL3A1-206ENST00000487010 LRRCC1Q9C099 1032 aa14.86□□□□□ -0.03
COL3A1-206ENST00000487010 R3HCC1Q9Y3T6 440 aaKnown RBP14.86□□□□□ -0.03
COL3A1-206ENST00000487010 XPCQ01831 940 aaPredicted RBP14.85□□□□□ -0.03
COL3A1-206ENST00000487010 TSHZ3Q63HK5 1081 aa14.85□□□□□ -0.03
COL3A1-206ENST00000487010 CCDC39Q9UFE4 941 aa14.85□□□□□ -0.03
COL3A1-206ENST00000487010 TSPYL4Q9UJ04 414 aa14.85□□□□□ -0.03
COL3A1-206ENST00000487010 PALD1Q9ULE6 856 aa14.85□□□□□ -0.03
COL3A1-206ENST00000487010 MX1P20591 662 aa14.85□□□□□ -0.03
COL3A1-206ENST00000487010 CHMLP26374 656 aa14.85□□□□□ -0.03
COL3A1-206ENST00000487010 IL17RAQ96F46 866 aa14.85□□□□□ -0.03
COL3A1-206ENST00000487010 NALCNQ8IZF0 1738 aa14.84□□□□□ -0.03
COL3A1-206ENST00000487010 FAM69CQ0P6D2 419 aa14.84□□□□□ -0.03
COL3A1-206ENST00000487010 SSH2Q76I76 1423 aa14.84□□□□□ -0.03
COL3A1-206ENST00000487010 ARHGEF10O15013 1369 aa14.84□□□□□ -0.03
COL3A1-206ENST00000487010 CSPP1Q1MSJ5 1256 aa14.83□□□□□ -0.03
COL3A1-206ENST00000487010 FOXO3O43524 673 aa14.83□□□□□ -0.04
COL3A1-206ENST00000487010 ATP8B2P98198 1209 aa14.83□□□□□ -0.04
COL3A1-206ENST00000487010 MTHFSDQ2M296 383 aaKnown RBP14.83□□□□□ -0.04
COL3A1-206ENST00000487010 RTF1Q92541 710 aaKnown RBP14.83□□□□□ -0.04
COL3A1-206ENST00000487010 ZMYND15Q9H091 742 aa14.83□□□□□ -0.04
COL3A1-206ENST00000487010 STAP2Q9UGK3 403 aa14.83□□□□□ -0.04
COL3A1-206ENST00000487010 USP31Q70CQ4 1352 aa14.83□□□□□ -0.04
COL3A1-206ENST00000487010 TSPOAP1O95153 1857 aa14.82□□□□□ -0.04
COL3A1-206ENST00000487010 ACEP12821 1306 aa14.82□□□□□ -0.04
COL3A1-206ENST00000487010 GNAI3P08754 354 aa14.82□□□□□ -0.04
COL3A1-206ENST00000487010 RILPL2Q969X0 211 aa14.82□□□□□ -0.04
COL3A1-206ENST00000487010 SYAP1Q96A49 352 aaPredicted RBP14.82□□□□□ -0.04
COL3A1-206ENST00000487010 TSPY26PQ9H489 355 aa14.82□□□□□ -0.04
COL3A1-206ENST00000487010 ANO2Q9NQ90 1003 aa14.82□□□□□ -0.04
COL3A1-206ENST00000487010 MAP3K19Q56UN5 1328 aa14.82□□□□□ -0.04
COL3A1-206ENST00000487010 PNMA6EA0A0J9YXQ4 647 aa14.81□□□□□ -0.04
COL3A1-206ENST00000487010 TRIM6-TRIM34B2RNG4 842 aa14.81□□□□□ -0.04
COL3A1-206ENST00000487010 RNF214Q8ND24 703 aa14.81□□□□□ -0.04
COL3A1-206ENST00000487010 STK31Q9BXU1 1019 aa14.81□□□□□ -0.04
COL3A1-206ENST00000487010 SRCIN1Q9C0H9 1055 aa14.81□□□□□ -0.04
COL3A1-206ENST00000487010 TOPAZ1Q8N9V7 1692 aa14.81□□□□□ -0.04
COL3A1-206ENST00000487010 PLEKHG3A1L390 1219 aa14.81□□□□□ -0.04
COL3A1-206ENST00000487010 HDGFP51858 240 aaKnown RBP14.81□□□□□ -0.04
COL3A1-206ENST00000487010 NOL8Q76FK4 1167 aaKnown RBP14.81□□□□□ -0.04
COL3A1-206ENST00000487010 XRN1Q8IZH2 1706 aaKnown RBP14.81□□□□□ -0.04
COL3A1-206ENST00000487010 RIMS1Q86UR5 1692 aaKnown RBP14.8□□□□□ -0.04
COL3A1-206ENST00000487010 USP6P35125 1406 aa14.8□□□□□ -0.04
COL3A1-206ENST00000487010 ROBO2Q9HCK4 1378 aa14.8□□□□□ -0.04
COL3A1-206ENST00000487010 FMN2Q9NZ56 1722 aa14.8□□□□□ -0.04
COL3A1-206ENST00000487010 RBM10P98175 930 aaKnown RBP14.8□□□□□ -0.04
COL3A1-206ENST00000487010 CYB5RLQ6IPT4 315 aa14.8□□□□□ -0.04
COL3A1-206ENST00000487010 DIP2BQ9P265 1576 aa14.79□□□□□ -0.04
COL3A1-206ENST00000487010 UQCRHLA0A096LP55 91 aa14.79□□□□□ -0.04
COL3A1-206ENST00000487010 EPB41L2O43491 1005 aaKnown RBP14.79□□□□□ -0.04
COL3A1-206ENST00000487010 UQCRHP07919 91 aa14.79□□□□□ -0.04
COL3A1-206ENST00000487010 FLIIQ13045 1269 aa14.79□□□□□ -0.04
COL3A1-206ENST00000487010 UNC5CLQ8IV45 518 aa14.79□□□□□ -0.04
COL3A1-206ENST00000487010 AOX1Q06278 1338 aa14.79□□□□□ -0.04
COL3A1-206ENST00000487010 FAM208AQ9UK61 1670 aaKnown RBP14.78□□□□□ -0.04
COL3A1-206ENST00000487010 PHF14O94880 888 aa14.78□□□□□ -0.04
COL3A1-206ENST00000487010 FKBP5Q13451 457 aaPredicted RBP14.78□□□□□ -0.04
COL3A1-206ENST00000487010 CCDC30Q5VVM6 783 aa14.78□□□□□ -0.04
COL3A1-206ENST00000487010 UPF3BQ9BZI7 483 aaKnown RBP14.78□□□□□ -0.04
COL3A1-206ENST00000487010 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.78□□□□□ -0.04
COL3A1-206ENST00000487010 WDR33Q9C0J8 1336 aaKnown RBP14.78□□□□□ -0.04
COL3A1-206ENST00000487010 GADD45BO75293 160 aaPredicted RBP14.78□□□□□ -0.04
COL3A1-206ENST00000487010 USP48Q86UV5 1035 aa14.78□□□□□ -0.04
COL3A1-206ENST00000487010 PKNOX2Q96KN3 472 aa14.78□□□□□ -0.04
COL3A1-206ENST00000487010 MAP7D2Q96T17 732 aa14.78□□□□□ -0.04
COL3A1-206ENST00000487010 KDRP35968 1356 aa14.77□□□□□ -0.04
COL3A1-206ENST00000487010 N4BP2Q86UW6 1770 aaPredicted RBP14.77□□□□□ -0.04
COL3A1-206ENST00000487010 PLEKHG5O94827 1062 aa14.77□□□□□ -0.04
COL3A1-206ENST00000487010 HSPA4P34932 840 aa14.77□□□□□ -0.04
COL3A1-206ENST00000487010 LRRFIP2Q9Y608 721 aaKnown RBP14.77□□□□□ -0.04
COL3A1-206ENST00000487010 CACNA1FO60840 1977 aa14.77□□□□□ -0.05
COL3A1-206ENST00000487010 SOX12O15370 315 aa14.77□□□□□ -0.05
COL3A1-206ENST00000487010 GDPD2Q9HCC8 539 aa14.77□□□□□ -0.05
COL3A1-206ENST00000487010 FAM13BQ9NYF5 915 aa14.77□□□□□ -0.05
COL3A1-206ENST00000487010 NUTM2FA1L443 756 aa14.76□□□□□ -0.05
COL3A1-206ENST00000487010 HTATSF1O43719 755 aaKnown RBP14.76□□□□□ -0.05
COL3A1-206ENST00000487010 PTMAP06454 111 aaKnown RBP14.76□□□□□ -0.05
COL3A1-206ENST00000487010 SASS6Q6UVJ0 657 aa14.76□□□□□ -0.05
COL3A1-206ENST00000487010 TMEM87AQ8NBN3 555 aa14.76□□□□□ -0.05
COL3A1-206ENST00000487010 ESF1Q9H501 851 aaKnown RBP14.76□□□□□ -0.05
COL3A1-206ENST00000487010 TCHHQ07283 1943 aa14.76□□□□□ -0.05
COL3A1-206ENST00000487010 DYNC1I1O14576 645 aa14.75□□□□□ -0.05
COL3A1-206ENST00000487010 UVSSAQ2YD98 709 aa14.75□□□□□ -0.05
COL3A1-206ENST00000487010 FOXD4L6Q3SYB3 417 aaPredicted RBP14.75□□□□□ -0.05
COL3A1-206ENST00000487010 FOXD4L3Q6VB84 417 aaPredicted RBP14.75□□□□□ -0.05
COL3A1-206ENST00000487010 IL25Q9H293 177 aa14.75□□□□□ -0.05
COL3A1-206ENST00000487010 LRRC37A3O60309 1634 aa14.75□□□□□ -0.05
COL3A1-206ENST00000487010 SBNO1A3KN83 1393 aa14.75□□□□□ -0.05
COL3A1-206ENST00000487010 FLT4P35916 1363 aa14.75□□□□□ -0.05
COL3A1-206ENST00000487010 FAM184AQ8NB25 1140 aa14.75□□□□□ -0.05
COL3A1-206ENST00000487010 EYA1Q99502 592 aa14.75□□□□□ -0.05
COL3A1-206ENST00000487010 USP44Q9H0E7 712 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms