RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 DCAF8L1A6NGE4 600 aa23.72■■□□□ 1.39
COL6A1-204ENST00000486023 MTHFSDQ2M296 383 aaKnown RBP23.72■■□□□ 1.39
COL6A1-204ENST00000486023 MSL1Q68DK7 614 aa23.72■■□□□ 1.39
COL6A1-204ENST00000486023 LGR6Q9HBX8 967 aa23.72■■□□□ 1.39
COL6A1-204ENST00000486023 KDM6AO15550 1401 aaPredicted RBP23.72■■□□□ 1.39
COL6A1-204ENST00000486023 ITGB4P16144 1822 aa23.72■■□□□ 1.39
COL6A1-204ENST00000486023 PTCD1O75127 700 aaKnown RBP23.71■■□□□ 1.39
COL6A1-204ENST00000486023 ITPK1Q13572 414 aa23.71■■□□□ 1.39
COL6A1-204ENST00000486023 SGIP1Q9BQI5 828 aa23.71■■□□□ 1.39
COL6A1-204ENST00000486023 FLAD1Q8NFF5 587 aa23.68■■□□□ 1.38
COL6A1-204ENST00000486023 SYT17Q9BSW7 474 aa23.68■■□□□ 1.38
COL6A1-204ENST00000486023 NUDCQ9Y266 331 aa23.68■■□□□ 1.38
COL6A1-204ENST00000486023 GNPATO15228 680 aa23.67■■□□□ 1.38
COL6A1-204ENST00000486023 DDX10Q13206 875 aaKnown RBP23.67■■□□□ 1.38
COL6A1-204ENST00000486023 AMIGO3Q86WK7 504 aa23.67■■□□□ 1.38
COL6A1-204ENST00000486023 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.66■■□□□ 1.38
COL6A1-204ENST00000486023 RNMTO43148 476 aaKnown RBP23.66■■□□□ 1.38
COL6A1-204ENST00000486023 U2AF1L5P0DN76 240 aaPredicted RBP23.66■■□□□ 1.38
COL6A1-204ENST00000486023 U2AF1Q01081 240 aaKnown RBP eCLIP23.66■■□□□ 1.38
COL6A1-204ENST00000486023 SLC4A9Q96Q91 983 aa23.66■■□□□ 1.38
COL6A1-204ENST00000486023 COL3A1P02461 1466 aaPredicted RBP23.65■■□□□ 1.38
COL6A1-204ENST00000486023 SLC52A2Q9HAB3 445 aa23.64■■□□□ 1.37
COL6A1-204ENST00000486023 C5P01031 1676 aa23.64■■□□□ 1.37
COL6A1-204ENST00000486023 PRKAR2BP31323 418 aa23.63■■□□□ 1.37
COL6A1-204ENST00000486023 SLC39A6Q13433 755 aa23.62■■□□□ 1.37
COL6A1-204ENST00000486023 GAS2L2Q8NHY3 880 aa23.61■■□□□ 1.37
COL6A1-204ENST00000486023 PHACTR3Q96KR7 559 aa23.61■■□□□ 1.37
COL6A1-204ENST00000486023 C4BP0C0L5 1744 aa23.61■■□□□ 1.37
COL6A1-204ENST00000486023 SSFA2P28290 1259 aa23.6■■□□□ 1.37
COL6A1-204ENST00000486023 RTCBQ9Y3I0 505 aaKnown RBP23.6■■□□□ 1.37
COL6A1-204ENST00000486023 TUBGCP6Q96RT7 1819 aa23.59■■□□□ 1.37
COL6A1-204ENST00000486023 GNAT3A8MTJ3 354 aa23.59■■□□□ 1.37
COL6A1-204ENST00000486023 TRAPPC3LQ5T215 181 aa23.59■■□□□ 1.37
COL6A1-204ENST00000486023 PELP1Q8IZL8 1130 aaKnown RBP23.59■■□□□ 1.37
COL6A1-204ENST00000486023 RSPH6AQ9H0K4 717 aa23.59■■□□□ 1.37
COL6A1-204ENST00000486023 TEFQ10587 303 aa23.56■■□□□ 1.36
COL6A1-204ENST00000486023 IL17REQ8NFR9 667 aa23.56■■□□□ 1.36
COL6A1-204ENST00000486023 TAF1LQ8IZX4 1826 aa23.56■■□□□ 1.36
COL6A1-204ENST00000486023 QSER1Q2KHR3 1735 aa23.56■■□□□ 1.36
COL6A1-204ENST00000486023 MAP3K5Q99683 1374 aa23.55■■□□□ 1.36
COL6A1-204ENST00000486023 GPR162Q16538 588 aa23.54■■□□□ 1.36
COL6A1-204ENST00000486023 DNAJC10Q8IXB1 793 aa23.54■■□□□ 1.36
COL6A1-204ENST00000486023 NLGN2Q8NFZ4 835 aa23.54■■□□□ 1.36
COL6A1-204ENST00000486023 ARHGEF1Q92888 912 aaKnown RBP23.54■■□□□ 1.36
COL6A1-204ENST00000486023 FCHSD2O94868 740 aa23.53■■□□□ 1.36
COL6A1-204ENST00000486023 RFC4P35249 363 aa23.53■■□□□ 1.36
COL6A1-204ENST00000486023 CRKLP46109 303 aaKnown RBP23.53■■□□□ 1.36
COL6A1-204ENST00000486023 RC3H1Q5TC82 1133 aaKnown RBP23.53■■□□□ 1.36
COL6A1-204ENST00000486023 TTC5Q8N0Z6 440 aa23.53■■□□□ 1.36
COL6A1-204ENST00000486023 RPS6KA4O75676 772 aa23.52■■□□□ 1.36
COL6A1-204ENST00000486023 CNTNAP4Q9C0A0 1308 aa23.52■■□□□ 1.36
COL6A1-204ENST00000486023 RTF1Q92541 710 aaKnown RBP23.51■■□□□ 1.35
COL6A1-204ENST00000486023 NEFMP07197 916 aa23.5■■□□□ 1.35
COL6A1-204ENST00000486023 YY1P25490 414 aa23.5■■□□□ 1.35
COL6A1-204ENST00000486023 RALBP1Q15311 655 aa23.49■■□□□ 1.35
COL6A1-204ENST00000486023 MCM10Q7L590 875 aa23.49■■□□□ 1.35
COL6A1-204ENST00000486023 SCN11AQ9UI33 1791 aa23.49■■□□□ 1.35
COL6A1-204ENST00000486023 DCTN1Q14203 1278 aa23.48■■□□□ 1.35
COL6A1-204ENST00000486023 MMP10P09238 476 aa23.47■■□□□ 1.35
COL6A1-204ENST00000486023 INTS5Q6P9B9 1019 aaKnown RBP23.47■■□□□ 1.35
COL6A1-204ENST00000486023 CCDC87Q9NVE4 849 aa23.47■■□□□ 1.35
COL6A1-204ENST00000486023 UBR3Q6ZT12 1888 aa23.47■■□□□ 1.35
COL6A1-204ENST00000486023 BTBD11A6QL63 1104 aa23.46■■□□□ 1.35
COL6A1-204ENST00000486023 ADRA2BP18089 450 aa23.46■■□□□ 1.35
COL6A1-204ENST00000486023 ZEB1P37275 1124 aaPredicted RBP23.46■■□□□ 1.35
COL6A1-204ENST00000486023 SRP68Q9UHB9 627 aaKnown RBP23.46■■□□□ 1.35
COL6A1-204ENST00000486023 WWC3Q9ULE0 1092 aa23.46■■□□□ 1.35
COL6A1-204ENST00000486023 CYP19A1P11511 503 aaPredicted RBP23.45■■□□□ 1.34
COL6A1-204ENST00000486023 ZNF790Q6PG37 636 aa23.45■■□□□ 1.34
COL6A1-204ENST00000486023 NLGN1Q8N2Q7 840 aa23.45■■□□□ 1.34
COL6A1-204ENST00000486023 CANXP27824 592 aaKnown RBP23.44■■□□□ 1.34
COL6A1-204ENST00000486023 ZNF496Q96IT1 587 aaPredicted RBP23.44■■□□□ 1.34
COL6A1-204ENST00000486023 CD2APQ9Y5K6 639 aa23.44■■□□□ 1.34
COL6A1-204ENST00000486023 MRC1P22897 1456 aa23.43■■□□□ 1.34
COL6A1-204ENST00000486023 KCNQ3O43525 872 aa23.43■■□□□ 1.34
COL6A1-204ENST00000486023 GYS1P13807 737 aa23.43■■□□□ 1.34
COL6A1-204ENST00000486023 ZBTB1Q9Y2K1 713 aa23.42■■□□□ 1.34
COL6A1-204ENST00000486023 ZPR1O75312 459 aa23.41■■□□□ 1.34
COL6A1-204ENST00000486023 STARD3NLO95772 234 aa23.41■■□□□ 1.34
COL6A1-204ENST00000486023 VSIG10Q8N0Z9 540 aa23.41■■□□□ 1.34
COL6A1-204ENST00000486023 ZNF330Q9Y3S2 320 aaPredicted RBP23.41■■□□□ 1.34
COL6A1-204ENST00000486023 PARP3Q9Y6F1 533 aa23.41■■□□□ 1.34
COL6A1-204ENST00000486023 MAPK8IP3Q9UPT6 1336 aa23.4■■□□□ 1.34
COL6A1-204ENST00000486023 FMNL2Q96PY5 1086 aa23.4■■□□□ 1.34
COL6A1-204ENST00000486023 PNNQ9H307 717 aaKnown RBP23.4■■□□□ 1.34
COL6A1-204ENST00000486023 UTRNP46939 3433 aa23.4■■□□□ 1.34
COL6A1-204ENST00000486023 KCPQ6ZWJ8 1503 aa23.39■■□□□ 1.34
COL6A1-204ENST00000486023 FKBP8Q14318 412 aa23.39■■□□□ 1.33
COL6A1-204ENST00000486023 MIS18AQ9NYP9 233 aa23.39■■□□□ 1.33
COL6A1-204ENST00000486023 COL24A1Q17RW2 1714 aa23.39■■□□□ 1.33
COL6A1-204ENST00000486023 CEMIPQ8WUJ3 1361 aa23.39■■□□□ 1.33
COL6A1-204ENST00000486023 MYBBP1AQ9BQG0 1328 aaKnown RBP23.38■■□□□ 1.33
COL6A1-204ENST00000486023 USPL1Q5W0Q7 1092 aa23.38■■□□□ 1.33
COL6A1-204ENST00000486023 COL5A3P25940 1745 aaPredicted RBP23.38■■□□□ 1.33
COL6A1-204ENST00000486023 ZNF831Q5JPB2 1677 aa23.38■■□□□ 1.33
COL6A1-204ENST00000486023 SOS1Q07889 1333 aaPredicted RBP23.37■■□□□ 1.33
COL6A1-204ENST00000486023 YBX3P16989 372 aaKnown RBP eCLIP23.37■■□□□ 1.33
COL6A1-204ENST00000486023 PLEKHF1Q96S99 279 aa23.37■■□□□ 1.33
COL6A1-204ENST00000486023 HEG1Q9ULI3 1381 aa23.37■■□□□ 1.33
COL6A1-204ENST00000486023 TJP1Q07157 1748 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms