RNA–Protein interactions for RNA: ENST00000485746.1

PTCD1-205, Transcript of pentatricopeptide repeat domain 1, humanhuman

TSL 3

Gene PTCD1, Length 721 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-205ENST00000485746 PTCD1O75127 700 aaKnown RBP16.65■□□□□ 0.26
PTCD1-205ENST00000485746 MTFR1LQ9H019 292 aa16.65■□□□□ 0.26
PTCD1-205ENST00000485746 SLC52A2Q9HAB3 445 aa16.65■□□□□ 0.26
PTCD1-205ENST00000485746 PHACTR3Q96KR7 559 aa16.64■□□□□ 0.25
PTCD1-205ENST00000485746 PNNQ9H307 717 aaKnown RBP16.64■□□□□ 0.25
PTCD1-205ENST00000485746 TOGARAM1Q9Y4F4 1720 aa16.64■□□□□ 0.25
PTCD1-205ENST00000485746 MYBBP1AQ9BQG0 1328 aaKnown RBP16.64■□□□□ 0.25
PTCD1-205ENST00000485746 TEFQ10587 303 aa16.63■□□□□ 0.25
PTCD1-205ENST00000485746 LINC00116Q8NCU8 138 aa16.63■□□□□ 0.25
PTCD1-205ENST00000485746 FLAD1Q8NFF5 587 aa16.63■□□□□ 0.25
PTCD1-205ENST00000485746 SLC16A10Q8TF71 515 aa16.63■□□□□ 0.25
PTCD1-205ENST00000485746 RTF1Q92541 710 aaKnown RBP16.63■□□□□ 0.25
PTCD1-205ENST00000485746 PNPLA7Q6ZV29 1317 aa16.63■□□□□ 0.25
PTCD1-205ENST00000485746 MAP3K5Q99683 1374 aa16.63■□□□□ 0.25
PTCD1-205ENST00000485746 PHF14O94880 888 aa16.62■□□□□ 0.25
PTCD1-205ENST00000485746 POLD1P28340 1107 aa16.61■□□□□ 0.25
PTCD1-205ENST00000485746 ITPK1Q13572 414 aa16.61■□□□□ 0.25
PTCD1-205ENST00000485746 ITGB4P16144 1822 aa16.61■□□□□ 0.25
PTCD1-205ENST00000485746 GNPATO15228 680 aa16.6■□□□□ 0.25
PTCD1-205ENST00000485746 SLC39A6Q13433 755 aa16.6■□□□□ 0.25
PTCD1-205ENST00000485746 COL23A1Q86Y22 540 aaPredicted RBP16.6■□□□□ 0.25
PTCD1-205ENST00000485746 TTC5Q8N0Z6 440 aa16.6■□□□□ 0.25
PTCD1-205ENST00000485746 MAPK8IP3Q9UPT6 1336 aa16.6■□□□□ 0.25
PTCD1-205ENST00000485746 LRP5O75197 1615 aa16.59■□□□□ 0.25
PTCD1-205ENST00000485746 PAPPAQ13219 1627 aa16.59■□□□□ 0.25
PTCD1-205ENST00000485746 LY75O60449 1722 aa16.59■□□□□ 0.25
PTCD1-205ENST00000485746 IL17REQ8NFR9 667 aa16.59■□□□□ 0.25
PTCD1-205ENST00000485746 WDR43Q15061 677 aaKnown RBP eCLIP16.58■□□□□ 0.24
PTCD1-205ENST00000485746 PRKRIP1Q9H875 184 aaPredicted RBP16.58■□□□□ 0.24
PTCD1-205ENST00000485746 RTCBQ9Y3I0 505 aaKnown RBP16.58■□□□□ 0.24
PTCD1-205ENST00000485746 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.57■□□□□ 0.24
PTCD1-205ENST00000485746 PTGER2P43116 358 aa16.57■□□□□ 0.24
PTCD1-205ENST00000485746 SMIM5Q71RC9 77 aa16.57■□□□□ 0.24
PTCD1-205ENST00000485746 KLHL34Q8N239 644 aa16.57■□□□□ 0.24
PTCD1-205ENST00000485746 SLC4A9Q96Q91 983 aa16.57■□□□□ 0.24
PTCD1-205ENST00000485746 DCAF8L1A6NGE4 600 aa16.56■□□□□ 0.24
PTCD1-205ENST00000485746 SSFA2P28290 1259 aa16.56■□□□□ 0.24
PTCD1-205ENST00000485746 MSL1Q68DK7 614 aa16.56■□□□□ 0.24
PTCD1-205ENST00000485746 MCM10Q7L590 875 aa16.56■□□□□ 0.24
PTCD1-205ENST00000485746 ARXQ96QS3 562 aa16.56■□□□□ 0.24
PTCD1-205ENST00000485746 BTBD11A6QL63 1104 aa16.55■□□□□ 0.24
PTCD1-205ENST00000485746 HTATSF1O43719 755 aaKnown RBP16.55■□□□□ 0.24
PTCD1-205ENST00000485746 TRAPPC3LQ5T215 181 aa16.55■□□□□ 0.24
PTCD1-205ENST00000485746 RC3H1Q5TC82 1133 aaKnown RBP16.55■□□□□ 0.24
PTCD1-205ENST00000485746 CASZ1Q86V15 1759 aa16.54■□□□□ 0.24
PTCD1-205ENST00000485746 DCTN1Q14203 1278 aa16.54■□□□□ 0.24
PTCD1-205ENST00000485746 ANP32CO43423 234 aa16.53■□□□□ 0.24
PTCD1-205ENST00000485746 CRKLP46109 303 aaKnown RBP16.53■□□□□ 0.24
PTCD1-205ENST00000485746 NFE2L2Q16236 605 aa16.53■□□□□ 0.24
PTCD1-205ENST00000485746 DNAJC10Q8IXB1 793 aa16.53■□□□□ 0.24
PTCD1-205ENST00000485746 PLEKHF1Q96S99 279 aa16.53■□□□□ 0.24
PTCD1-205ENST00000485746 C4BP0C0L5 1744 aa16.53■□□□□ 0.24
PTCD1-205ENST00000485746 C5P01031 1676 aa16.53■□□□□ 0.24
PTCD1-205ENST00000485746 CNTNAP4Q9C0A0 1308 aa16.52■□□□□ 0.24
PTCD1-205ENST00000485746 RPS6KA4O75676 772 aa16.52■□□□□ 0.24
PTCD1-205ENST00000485746 RFC4P35249 363 aa16.52■□□□□ 0.24
PTCD1-205ENST00000485746 ZNF790Q6PG37 636 aa16.52■□□□□ 0.24
PTCD1-205ENST00000485746 AMIGO3Q86WK7 504 aa16.52■□□□□ 0.24
PTCD1-205ENST00000485746 FHDC1Q9C0D6 1143 aaPredicted RBP16.52■□□□□ 0.24
PTCD1-205ENST00000485746 CCDC146Q8IYE0 955 aa16.51■□□□□ 0.23
PTCD1-205ENST00000485746 FMNL2Q96PY5 1086 aa16.51■□□□□ 0.23
PTCD1-205ENST00000485746 SGIP1Q9BQI5 828 aa16.51■□□□□ 0.23
PTCD1-205ENST00000485746 SCN11AQ9UI33 1791 aa16.51■□□□□ 0.23
PTCD1-205ENST00000485746 MRC1P22897 1456 aa16.5■□□□□ 0.23
PTCD1-205ENST00000485746 STARD3NLO95772 234 aa16.5■□□□□ 0.23
PTCD1-205ENST00000485746 ADRA2BP18089 450 aa16.5■□□□□ 0.23
PTCD1-205ENST00000485746 TAF7Q15545 349 aaPredicted RBP16.5■□□□□ 0.23
PTCD1-205ENST00000485746 VSIG10Q8N0Z9 540 aa16.5■□□□□ 0.23
PTCD1-205ENST00000485746 ARHGEF1Q92888 912 aaKnown RBP16.5■□□□□ 0.23
PTCD1-205ENST00000485746 TEX13AQ9BXU3 409 aaPredicted RBP16.5■□□□□ 0.23
PTCD1-205ENST00000485746 CCDC87Q9NVE4 849 aa16.5■□□□□ 0.23
PTCD1-205ENST00000485746 CEMIPQ8WUJ3 1361 aa16.5■□□□□ 0.23
PTCD1-205ENST00000485746 RIPK4P57078 832 aa16.49■□□□□ 0.23
PTCD1-205ENST00000485746 ZNF496Q96IT1 587 aaPredicted RBP16.49■□□□□ 0.23
PTCD1-205ENST00000485746 SYT17Q9BSW7 474 aa16.49■□□□□ 0.23
PTCD1-205ENST00000485746 KCNQ3O43525 872 aa16.48■□□□□ 0.23
PTCD1-205ENST00000485746 CYP19A1P11511 503 aaPredicted RBP16.48■□□□□ 0.23
PTCD1-205ENST00000485746 NEUROD2Q15784 382 aa16.48■□□□□ 0.23
PTCD1-205ENST00000485746 NPM2Q86SE8 214 aaKnown RBP16.48■□□□□ 0.23
PTCD1-205ENST00000485746 RUNDC1Q96C34 613 aa16.48■□□□□ 0.23
PTCD1-205ENST00000485746 ADAMTS8Q9UP79 889 aa16.48■□□□□ 0.23
PTCD1-205ENST00000485746 CANXP27824 592 aaKnown RBP16.47■□□□□ 0.23
PTCD1-205ENST00000485746 LMOD3Q0VAK6 560 aa16.47■□□□□ 0.23
PTCD1-205ENST00000485746 INTS5Q6P9B9 1019 aaKnown RBP16.47■□□□□ 0.23
PTCD1-205ENST00000485746 PNISRQ8TF01 805 aaKnown RBP16.47■□□□□ 0.23
PTCD1-205ENST00000485746 MIS18AQ9NYP9 233 aa16.47■□□□□ 0.23
PTCD1-205ENST00000485746 SRCAPQ6ZRS2 3230 aa16.47■□□□□ 0.23
PTCD1-205ENST00000485746 QSER1Q2KHR3 1735 aa16.46■□□□□ 0.23
PTCD1-205ENST00000485746 ZPR1O75312 459 aa16.46■□□□□ 0.23
PTCD1-205ENST00000485746 TMPOP42166 694 aaKnown RBP16.46■□□□□ 0.23
PTCD1-205ENST00000485746 NLGN1Q8N2Q7 840 aa16.46■□□□□ 0.23
PTCD1-205ENST00000485746 RRP7AQ9Y3A4 280 aaKnown RBP16.46■□□□□ 0.23
PTCD1-205ENST00000485746 TAF1LQ8IZX4 1826 aa16.46■□□□□ 0.23
PTCD1-205ENST00000485746 HEG1Q9ULI3 1381 aa16.46■□□□□ 0.23
PTCD1-205ENST00000485746 THUMPD2Q9BTF0 503 aaKnown RBP16.45■□□□□ 0.22
PTCD1-205ENST00000485746 ZNF330Q9Y3S2 320 aaPredicted RBP16.45■□□□□ 0.22
PTCD1-205ENST00000485746 SNRPA1P09661 255 aaKnown RBP16.44■□□□□ 0.22
PTCD1-205ENST00000485746 PELP1Q8IZL8 1130 aaKnown RBP16.44■□□□□ 0.22
PTCD1-205ENST00000485746 SRP68Q9UHB9 627 aaKnown RBP16.44■□□□□ 0.22
PTCD1-205ENST00000485746 ZBTB1Q9Y2K1 713 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms