RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 CDCA7Q9BWT1 371 aaPredicted RBP7.36□□□□□ -1.23
VPS50-216ENST00000484954 RRAGCQ9HB90 399 aa7.36□□□□□ -1.23
VPS50-216ENST00000484954 PRM3Q9NNZ6 103 aa7.36□□□□□ -1.23
VPS50-216ENST00000484954 ZNF330Q9Y3S2 320 aaPredicted RBP7.36□□□□□ -1.23
VPS50-216ENST00000484954 SHISA8B8ZZ34 492 aa7.35□□□□□ -1.23
VPS50-216ENST00000484954 H7C1W4 665 aa7.35□□□□□ -1.23
VPS50-216ENST00000484954 ERVK-9P63128 1117 aa7.35□□□□□ -1.23
VPS50-216ENST00000484954 POU4F2Q12837 409 aa7.35□□□□□ -1.23
VPS50-216ENST00000484954 GRIN2CQ14957 1233 aa7.35□□□□□ -1.23
VPS50-216ENST00000484954 OXCT2Q9BYC2 517 aaPredicted RBP7.35□□□□□ -1.23
VPS50-216ENST00000484954 MKL2Q9ULH7 1088 aa7.35□□□□□ -1.23
VPS50-216ENST00000484954 NSFL1CQ9UNZ2 370 aaKnown RBP7.35□□□□□ -1.23
VPS50-216ENST00000484954 MCCD1P59942 119 aaPredicted RBP7.34□□□□□ -1.23
VPS50-216ENST00000484954 RNF20Q5VTR2 975 aa7.34□□□□□ -1.23
VPS50-216ENST00000484954 PHTF2Q8N3S3 785 aa7.34□□□□□ -1.23
VPS50-216ENST00000484954 OSBPL3Q9H4L5 887 aa7.34□□□□□ -1.23
VPS50-216ENST00000484954 DYRK1BQ9Y463 629 aa7.34□□□□□ -1.23
VPS50-216ENST00000484954 EIF4G2P78344 907 aaKnown RBP eCLIP7.33□□□□□ -1.24
VPS50-216ENST00000484954 CC2D2BQ6DHV5 1058 aa7.33□□□□□ -1.24
VPS50-216ENST00000484954 ATP5J2-PTCD1G3V325 749 aa7.32□□□□□ -1.24
VPS50-216ENST00000484954 C1orf229Q6ZS94 237 aaPredicted RBP7.32□□□□□ -1.24
VPS50-216ENST00000484954 SUV39H2Q9H5I1 410 aa7.32□□□□□ -1.24
VPS50-216ENST00000484954 LRRC4BQ9NT99 713 aa7.32□□□□□ -1.24
VPS50-216ENST00000484954 TRAK2O60296 914 aa7.31□□□□□ -1.24
VPS50-216ENST00000484954 SLC27A3Q5K4L6 730 aa7.31□□□□□ -1.24
VPS50-216ENST00000484954 NUCKS1Q9H1E3 243 aaKnown RBP7.31□□□□□ -1.24
VPS50-216ENST00000484954 A0A1W2PRU2 124 aa7.3□□□□□ -1.24
VPS50-216ENST00000484954 POM121CA8CG34 1229 aa7.3□□□□□ -1.24
VPS50-216ENST00000484954 PIK3CDO00329 1044 aa7.3□□□□□ -1.24
VPS50-216ENST00000484954 STAU1O95793 577 aaKnown RBP7.3□□□□□ -1.24
VPS50-216ENST00000484954 UBTFP17480 764 aaKnown RBP7.3□□□□□ -1.24
VPS50-216ENST00000484954 MAP2K3P46734 347 aa7.3□□□□□ -1.24
VPS50-216ENST00000484954 FLIIQ13045 1269 aa7.3□□□□□ -1.24
VPS50-216ENST00000484954 WASHC4Q2M389 1173 aa7.3□□□□□ -1.24
VPS50-216ENST00000484954 ZNF592Q92610 1267 aa7.3□□□□□ -1.24
VPS50-216ENST00000484954 KLRG1Q96E93 195 aa7.3□□□□□ -1.24
VPS50-216ENST00000484954 ARHGEF10LQ9HCE6 1279 aa7.3□□□□□ -1.24
VPS50-216ENST00000484954 RAB6BQ9NRW1 208 aa7.3□□□□□ -1.24
VPS50-216ENST00000484954 C1QTNF9BB2RNN3 333 aa7.29□□□□□ -1.24
VPS50-216ENST00000484954 SLFNL1Q499Z3 407 aa7.29□□□□□ -1.24
VPS50-216ENST00000484954 RNF135Q8IUD6 432 aa7.29□□□□□ -1.24
VPS50-216ENST00000484954 ADAMTS19Q8TE59 1207 aa7.29□□□□□ -1.24
VPS50-216ENST00000484954 CLUAP1Q96AJ1 413 aa7.29□□□□□ -1.24
VPS50-216ENST00000484954 CHIC2Q9UKJ5 165 aa7.29□□□□□ -1.24
VPS50-216ENST00000484954 ITGB7P26010 798 aa7.28□□□□□ -1.24
VPS50-216ENST00000484954 GPC1P35052 558 aa7.28□□□□□ -1.24
VPS50-216ENST00000484954 NBPF10Q6P3W6 841 aaKnown RBP7.28□□□□□ -1.24
VPS50-216ENST00000484954 CCDC125Q86Z20 511 aa7.28□□□□□ -1.24
VPS50-216ENST00000484954 NBPF15Q8N660 670 aa7.28□□□□□ -1.24
VPS50-216ENST00000484954 EDARADDQ8WWZ3 215 aa7.28□□□□□ -1.24
VPS50-216ENST00000484954 NLRP3Q96P20 1036 aa7.28□□□□□ -1.24
VPS50-216ENST00000484954 SEMA6BQ9H3T3 888 aa7.28□□□□□ -1.24
VPS50-216ENST00000484954 TIMMDC1Q9NPL8 285 aa7.28□□□□□ -1.24
VPS50-216ENST00000484954 DOLKQ9UPQ8 538 aa7.28□□□□□ -1.24
VPS50-216ENST00000484954 AMPD1P23109 780 aa7.27□□□□□ -1.25
VPS50-216ENST00000484954 SEMA3FQ13275 785 aa7.27□□□□□ -1.25
VPS50-216ENST00000484954 OXLD1Q5BKU9 147 aa7.27□□□□□ -1.25
VPS50-216ENST00000484954 CYP2U1Q7Z449 544 aa7.27□□□□□ -1.25
VPS50-216ENST00000484954 ALYREFQ86V81 257 aaKnown RBP7.27□□□□□ -1.25
VPS50-216ENST00000484954 ALG2Q9H553 416 aa7.27□□□□□ -1.25
VPS50-216ENST00000484954 GPAMQ9HCL2 828 aa7.27□□□□□ -1.25
VPS50-216ENST00000484954 RAD21O60216 631 aa7.26□□□□□ -1.25
VPS50-216ENST00000484954 IL2RAP01589 272 aa7.26□□□□□ -1.25
VPS50-216ENST00000484954 F11P03951 625 aa7.26□□□□□ -1.25
VPS50-216ENST00000484954 CLN3Q13286 438 aa7.26□□□□□ -1.25
VPS50-216ENST00000484954 DOC2BQ14184 412 aa7.26□□□□□ -1.25
VPS50-216ENST00000484954 CD163Q86VB7 1156 aa7.26□□□□□ -1.25
VPS50-216ENST00000484954 THBS1P07996 1170 aa7.25□□□□□ -1.25
VPS50-216ENST00000484954 CHRNA4P43681 627 aa7.25□□□□□ -1.25
VPS50-216ENST00000484954 ZMYM1Q5SVZ6 1142 aa7.25□□□□□ -1.25
VPS50-216ENST00000484954 LINC00114Q6XXX2 140 aa7.25□□□□□ -1.25
VPS50-216ENST00000484954 PLPP7Q8NBV4 271 aa7.25□□□□□ -1.25
VPS50-216ENST00000484954 GRIP2Q9C0E4 1043 aa7.25□□□□□ -1.25
VPS50-216ENST00000484954 MYCP01106 439 aaPredicted RBP7.24□□□□□ -1.25
VPS50-216ENST00000484954 SOX11P35716 441 aa7.24□□□□□ -1.25
VPS50-216ENST00000484954 LCE1DQ5T752 114 aa7.24□□□□□ -1.25
VPS50-216ENST00000484954 TAS1R3Q7RTX0 852 aa7.24□□□□□ -1.25
VPS50-216ENST00000484954 CFHR5Q9BXR6 569 aa7.24□□□□□ -1.25
VPS50-216ENST00000484954 GDF2Q9UK05 429 aaPredicted RBP7.24□□□□□ -1.25
VPS50-216ENST00000484954 WASLO00401 505 aaPredicted RBP7.23□□□□□ -1.25
VPS50-216ENST00000484954 HOXB4P17483 251 aaPredicted RBP7.23□□□□□ -1.25
VPS50-216ENST00000484954 PHKA2P46019 1235 aa7.23□□□□□ -1.25
VPS50-216ENST00000484954 FNBP4Q8N3X1 1017 aaPredicted RBP7.23□□□□□ -1.25
VPS50-216ENST00000484954 CNKSR1Q969H4 720 aa7.23□□□□□ -1.25
VPS50-216ENST00000484954 TRIM52Q96A61 297 aa7.23□□□□□ -1.25
VPS50-216ENST00000484954 ESF1Q9H501 851 aaKnown RBP7.23□□□□□ -1.25
VPS50-216ENST00000484954 ETNK1Q9HBU6 452 aa7.23□□□□□ -1.25
VPS50-216ENST00000484954 HRH3Q9Y5N1 445 aa7.23□□□□□ -1.25
VPS50-216ENST00000484954 GNRH1P01148 92 aa7.22□□□□□ -1.25
VPS50-216ENST00000484954 USP4Q13107 963 aa7.22□□□□□ -1.25
VPS50-216ENST00000484954 GOLGA6L1Q8N7Z2 621 aa7.22□□□□□ -1.25
VPS50-216ENST00000484954 PHF24Q9UPV7 400 aa7.22□□□□□ -1.25
VPS50-216ENST00000484954 SCO2A0A1W2PP80 73 aa7.21□□□□□ -1.26
VPS50-216ENST00000484954 SPATA31C2B4DYI2 1134 aa7.21□□□□□ -1.26
VPS50-216ENST00000484954 BMP4P12644 408 aa7.21□□□□□ -1.26
VPS50-216ENST00000484954 SKIP12755 728 aa7.21□□□□□ -1.26
VPS50-216ENST00000484954 CENPCQ03188 943 aa7.21□□□□□ -1.26
VPS50-216ENST00000484954 HDGFL1Q5TGJ6 251 aa7.21□□□□□ -1.26
VPS50-216ENST00000484954 UCN2Q96RP3 112 aa7.21□□□□□ -1.26
VPS50-216ENST00000484954 ESYT1Q9BSJ8 1104 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms