RNA–Protein interactions for RNA: ENST00000484305.1

HDAC1-209, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-209ENST00000484305 ITPK1Q13572 414 aa17.34■□□□□ 0.37
HDAC1-209ENST00000484305 COL24A1Q17RW2 1714 aa17.34■□□□□ 0.37
HDAC1-209ENST00000484305 UBR3Q6ZT12 1888 aa17.34■□□□□ 0.37
HDAC1-209ENST00000484305 COL23A1Q86Y22 540 aaPredicted RBP17.34■□□□□ 0.37
HDAC1-209ENST00000484305 LINC00116Q8NCU8 138 aa17.34■□□□□ 0.37
HDAC1-209ENST00000484305 SLC16A10Q8TF71 515 aa17.34■□□□□ 0.37
HDAC1-209ENST00000484305 LGR6Q9HBX8 967 aa17.34■□□□□ 0.37
HDAC1-209ENST00000484305 HMGB2P26583 209 aaKnown RBP17.33■□□□□ 0.36
HDAC1-209ENST00000484305 MSH5O43196 834 aa17.32■□□□□ 0.36
HDAC1-209ENST00000484305 AMIGO3Q86WK7 504 aa17.32■□□□□ 0.36
HDAC1-209ENST00000484305 SLC4A9Q96Q91 983 aa17.32■□□□□ 0.36
HDAC1-209ENST00000484305 RBM42Q9BTD8 480 aaKnown RBP17.32■□□□□ 0.36
HDAC1-209ENST00000484305 ZNF831Q5JPB2 1677 aa17.32■□□□□ 0.36
HDAC1-209ENST00000484305 RNMTO43148 476 aaKnown RBP17.31■□□□□ 0.36
HDAC1-209ENST00000484305 DDX10Q13206 875 aaKnown RBP17.31■□□□□ 0.36
HDAC1-209ENST00000484305 SMIM5Q71RC9 77 aa17.31■□□□□ 0.36
HDAC1-209ENST00000484305 AK7Q96M32 723 aa17.31■□□□□ 0.36
HDAC1-209ENST00000484305 ADAMTS7Q9UKP4 1686 aa17.31■□□□□ 0.36
HDAC1-209ENST00000484305 SLC52A2Q9HAB3 445 aa17.3■□□□□ 0.36
HDAC1-209ENST00000484305 NUDCQ9Y266 331 aa17.3■□□□□ 0.36
HDAC1-209ENST00000484305 PTCD1O75127 700 aaKnown RBP17.29■□□□□ 0.36
HDAC1-209ENST00000484305 PRKAR2BP31323 418 aa17.29■□□□□ 0.36
HDAC1-209ENST00000484305 FLAD1Q8NFF5 587 aa17.29■□□□□ 0.36
HDAC1-209ENST00000484305 PHACTR3Q96KR7 559 aa17.29■□□□□ 0.36
HDAC1-209ENST00000484305 ARXQ96QS3 562 aa17.29■□□□□ 0.36
HDAC1-209ENST00000484305 FHDC1Q9C0D6 1143 aaPredicted RBP17.29■□□□□ 0.36
HDAC1-209ENST00000484305 RSPH6AQ9H0K4 717 aa17.29■□□□□ 0.36
HDAC1-209ENST00000484305 COL5A3P25940 1745 aaPredicted RBP17.29■□□□□ 0.36
HDAC1-209ENST00000484305 PHF14O94880 888 aa17.28■□□□□ 0.36
HDAC1-209ENST00000484305 U2AF1L5P0DN76 240 aaPredicted RBP17.28■□□□□ 0.36
HDAC1-209ENST00000484305 U2AF1Q01081 240 aaKnown RBP eCLIP17.28■□□□□ 0.36
HDAC1-209ENST00000484305 MRC1P22897 1456 aa17.28■□□□□ 0.36
HDAC1-209ENST00000484305 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.27■□□□□ 0.36
HDAC1-209ENST00000484305 MSL1Q68DK7 614 aa17.27■□□□□ 0.36
HDAC1-209ENST00000484305 SYT17Q9BSW7 474 aa17.27■□□□□ 0.36
HDAC1-209ENST00000484305 MYH14Q7Z406 1995 aaKnown RBP17.27■□□□□ 0.36
HDAC1-209ENST00000484305 GNPATO15228 680 aa17.26■□□□□ 0.35
HDAC1-209ENST00000484305 POLD1P28340 1107 aa17.26■□□□□ 0.35
HDAC1-209ENST00000484305 GAS2L2Q8NHY3 880 aa17.26■□□□□ 0.35
HDAC1-209ENST00000484305 MAP3K5Q99683 1374 aa17.26■□□□□ 0.35
HDAC1-209ENST00000484305 TJP1Q07157 1748 aa17.25■□□□□ 0.35
HDAC1-209ENST00000484305 GNAT3A8MTJ3 354 aa17.25■□□□□ 0.35
HDAC1-209ENST00000484305 FCHSD2O94868 740 aa17.25■□□□□ 0.35
HDAC1-209ENST00000484305 SSFA2P28290 1259 aa17.25■□□□□ 0.35
HDAC1-209ENST00000484305 SLC39A6Q13433 755 aa17.25■□□□□ 0.35
HDAC1-209ENST00000484305 IL17REQ8NFR9 667 aa17.25■□□□□ 0.35
HDAC1-209ENST00000484305 SIPA1L3O60292 1781 aaPredicted RBP17.23■□□□□ 0.35
HDAC1-209ENST00000484305 CICQ96RK0 1608 aaPredicted RBP17.23■□□□□ 0.35
HDAC1-209ENST00000484305 RALBP1Q15311 655 aa17.23■□□□□ 0.35
HDAC1-209ENST00000484305 RC3H1Q5TC82 1133 aaKnown RBP17.23■□□□□ 0.35
HDAC1-209ENST00000484305 PIAS4Q8N2W9 510 aaPredicted RBP17.23■□□□□ 0.35
HDAC1-209ENST00000484305 CNTNAP4Q9C0A0 1308 aa17.22■□□□□ 0.35
HDAC1-209ENST00000484305 ZEB1P37275 1124 aaPredicted RBP17.22■□□□□ 0.35
HDAC1-209ENST00000484305 KCPQ6ZWJ8 1503 aa17.21■□□□□ 0.35
HDAC1-209ENST00000484305 UBR2Q8IWV8 1755 aa17.21■□□□□ 0.35
HDAC1-209ENST00000484305 KLHL34Q8N239 644 aa17.21■□□□□ 0.35
HDAC1-209ENST00000484305 RTCBQ9Y3I0 505 aaKnown RBP17.21■□□□□ 0.35
HDAC1-209ENST00000484305 RPS6KA4O75676 772 aa17.2■□□□□ 0.34
HDAC1-209ENST00000484305 CRKLP46109 303 aaKnown RBP17.2■□□□□ 0.34
HDAC1-209ENST00000484305 TEFQ10587 303 aa17.2■□□□□ 0.34
HDAC1-209ENST00000484305 TRAPPC3LQ5T215 181 aa17.2■□□□□ 0.34
HDAC1-209ENST00000484305 CEMIPQ8WUJ3 1361 aa17.19■□□□□ 0.34
HDAC1-209ENST00000484305 DNAJC10Q8IXB1 793 aa17.19■□□□□ 0.34
HDAC1-209ENST00000484305 ARHGEF1Q92888 912 aaKnown RBP17.19■□□□□ 0.34
HDAC1-209ENST00000484305 C4AP0C0L4 1744 aa17.18■□□□□ 0.34
HDAC1-209ENST00000484305 DLG5Q8TDM6 1919 aa17.18■□□□□ 0.34
HDAC1-209ENST00000484305 DCAF8L1A6NGE4 600 aa17.18■□□□□ 0.34
HDAC1-209ENST00000484305 INTS5Q6P9B9 1019 aaKnown RBP17.18■□□□□ 0.34
HDAC1-209ENST00000484305 ZNF790Q6PG37 636 aa17.16■□□□□ 0.34
HDAC1-209ENST00000484305 MCM10Q7L590 875 aa17.16■□□□□ 0.34
HDAC1-209ENST00000484305 TTC5Q8N0Z6 440 aa17.16■□□□□ 0.34
HDAC1-209ENST00000484305 NLGN2Q8NFZ4 835 aa17.16■□□□□ 0.34
HDAC1-209ENST00000484305 PLEKHF1Q96S99 279 aa17.16■□□□□ 0.34
HDAC1-209ENST00000484305 MYBBP1AQ9BQG0 1328 aaKnown RBP17.16■□□□□ 0.34
HDAC1-209ENST00000484305 CYP19A1P11511 503 aaPredicted RBP17.15■□□□□ 0.34
HDAC1-209ENST00000484305 RFC4P35249 363 aa17.15■□□□□ 0.34
HDAC1-209ENST00000484305 DCTN1Q14203 1278 aa17.15■□□□□ 0.34
HDAC1-209ENST00000484305 VSIG10Q8N0Z9 540 aa17.15■□□□□ 0.34
HDAC1-209ENST00000484305 RTF1Q92541 710 aaKnown RBP17.15■□□□□ 0.34
HDAC1-209ENST00000484305 ZNF496Q96IT1 587 aaPredicted RBP17.15■□□□□ 0.34
HDAC1-209ENST00000484305 CCDC87Q9NVE4 849 aa17.15■□□□□ 0.34
HDAC1-209ENST00000484305 BTBD11A6QL63 1104 aa17.13■□□□□ 0.33
HDAC1-209ENST00000484305 KCNQ3O43525 872 aa17.13■□□□□ 0.33
HDAC1-209ENST00000484305 HTATSF1O43719 755 aaKnown RBP17.13■□□□□ 0.33
HDAC1-209ENST00000484305 NEFMP07197 916 aa17.13■□□□□ 0.33
HDAC1-209ENST00000484305 GYS1P13807 737 aa17.13■□□□□ 0.33
HDAC1-209ENST00000484305 NLGN1Q8N2Q7 840 aa17.12■□□□□ 0.33
HDAC1-209ENST00000484305 SRP68Q9UHB9 627 aaKnown RBP17.12■□□□□ 0.33
HDAC1-209ENST00000484305 CD2APQ9Y5K6 639 aa17.12■□□□□ 0.33
HDAC1-209ENST00000484305 HEG1Q9ULI3 1381 aa17.12■□□□□ 0.33
HDAC1-209ENST00000484305 MMP10P09238 476 aa17.11■□□□□ 0.33
HDAC1-209ENST00000484305 PRKRIP1Q9H875 184 aaPredicted RBP17.11■□□□□ 0.33
HDAC1-209ENST00000484305 ZBTB1Q9Y2K1 713 aa17.11■□□□□ 0.33
HDAC1-209ENST00000484305 SOS1Q07889 1333 aaPredicted RBP17.11■□□□□ 0.33
HDAC1-209ENST00000484305 NFE2L2Q16236 605 aa17.1■□□□□ 0.33
HDAC1-209ENST00000484305 GPR162Q16538 588 aa17.1■□□□□ 0.33
HDAC1-209ENST00000484305 FMNL2Q96PY5 1086 aa17.1■□□□□ 0.33
HDAC1-209ENST00000484305 PNNQ9H307 717 aaKnown RBP17.1■□□□□ 0.33
HDAC1-209ENST00000484305 USP42Q9H9J4 1324 aaKnown RBP17.1■□□□□ 0.33
HDAC1-209ENST00000484305 UTRNP46939 3433 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms