RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 RBM27Q9P2N5 1060 aaKnown RBP8.71□□□□□ -1.02
PTCD3-215ENST00000484203 TIMELESSQ9UNS1 1208 aa8.71□□□□□ -1.02
PTCD3-215ENST00000484203 CCDC9Q9Y3X0 531 aaKnown RBP8.71□□□□□ -1.02
PTCD3-215ENST00000484203 PUS7Q96PZ0 661 aaKnown RBP8.7□□□□□ -1.02
PTCD3-215ENST00000484203 CARD11Q9BXL7 1154 aa8.7□□□□□ -1.02
PTCD3-215ENST00000484203 BTG4Q9NY30 223 aa8.7□□□□□ -1.02
PTCD3-215ENST00000484203 HCSTQ9UBK5 93 aa8.7□□□□□ -1.02
PTCD3-215ENST00000484203 KIAA1210Q9ULL0 1709 aa8.7□□□□□ -1.02
PTCD3-215ENST00000484203 SBNO2Q9Y2G9 1366 aa8.7□□□□□ -1.02
PTCD3-215ENST00000484203 HRO43593 1189 aa8.69□□□□□ -1.02
PTCD3-215ENST00000484203 SF3B2Q13435 895 aaKnown RBP8.69□□□□□ -1.02
PTCD3-215ENST00000484203 CABP1Q9NZU7 370 aa8.69□□□□□ -1.02
PTCD3-215ENST00000484203 FAM198AQ9UFP1 575 aa8.69□□□□□ -1.02
PTCD3-215ENST00000484203 RABGEF1Q9UJ41 708 aa8.69□□□□□ -1.02
PTCD3-215ENST00000484203 CLSPNQ9HAW4 1339 aa8.69□□□□□ -1.02
PTCD3-215ENST00000484203 PPIP5K1Q6PFW1 1433 aa8.69□□□□□ -1.02
PTCD3-215ENST00000484203 SEPT12Q8IYM1 358 aa8.68□□□□□ -1.02
PTCD3-215ENST00000484203 CPDO75976 1380 aa8.68□□□□□ -1.02
PTCD3-215ENST00000484203 RALGAPBQ86X10 1494 aa8.68□□□□□ -1.02
PTCD3-215ENST00000484203 A0A0G2JS52 829 aa8.67□□□□□ -1.02
PTCD3-215ENST00000484203 C11orf95C9JLR9 678 aaPredicted RBP8.67□□□□□ -1.02
PTCD3-215ENST00000484203 USP19O94966 1318 aa8.67□□□□□ -1.02
PTCD3-215ENST00000484203 GCP02774 474 aa8.67□□□□□ -1.02
PTCD3-215ENST00000484203 EVA1CP58658 441 aa8.67□□□□□ -1.02
PTCD3-215ENST00000484203 MYT1Q01538 1121 aa8.67□□□□□ -1.02
PTCD3-215ENST00000484203 KRT27Q7Z3Y8 459 aa8.67□□□□□ -1.02
PTCD3-215ENST00000484203 KRI1Q8N9T8 703 aaKnown RBP8.67□□□□□ -1.02
PTCD3-215ENST00000484203 TTC13Q8NBP0 860 aa8.67□□□□□ -1.02
PTCD3-215ENST00000484203 KCNH5Q8NCM2 988 aa8.67□□□□□ -1.02
PTCD3-215ENST00000484203 TTC21AQ8NDW8 1320 aa8.67□□□□□ -1.02
PTCD3-215ENST00000484203 NBPF3Q9H094 633 aa8.67□□□□□ -1.02
PTCD3-215ENST00000484203 PNMA3Q9UL41 463 aa8.67□□□□□ -1.02
PTCD3-215ENST00000484203 USP32Q8NFA0 1604 aa8.66□□□□□ -1.02
PTCD3-215ENST00000484203 KIAA0232Q92628 1395 aa8.66□□□□□ -1.02
PTCD3-215ENST00000484203 SPATA31A5Q5VU36 1347 aa8.66□□□□□ -1.02
PTCD3-215ENST00000484203 SPATA31A7Q8IWB4 1347 aa8.66□□□□□ -1.02
PTCD3-215ENST00000484203 NBPF26B4DH59 902 aa8.66□□□□□ -1.02
PTCD3-215ENST00000484203 BHMG1C9JSJ3 638 aaPredicted RBP8.66□□□□□ -1.02
PTCD3-215ENST00000484203 ZMYND10O75800 440 aa8.66□□□□□ -1.02
PTCD3-215ENST00000484203 FAM161AQ3B820 660 aa8.66□□□□□ -1.02
PTCD3-215ENST00000484203 NUDT18Q6ZVK8 323 aa8.66□□□□□ -1.02
PTCD3-215ENST00000484203 TATDN2Q93075 761 aa8.66□□□□□ -1.02
PTCD3-215ENST00000484203 THRAP3Q9Y2W1 955 aaKnown RBP8.66□□□□□ -1.02
PTCD3-215ENST00000484203 USP6P35125 1406 aa8.65□□□□□ -1.02
PTCD3-215ENST00000484203 SMAPO00193 183 aa8.65□□□□□ -1.02
PTCD3-215ENST00000484203 ZC3H6P61129 1189 aaKnown RBP8.65□□□□□ -1.02
PTCD3-215ENST00000484203 CDCA8Q53HL2 280 aa8.65□□□□□ -1.02
PTCD3-215ENST00000484203 BARGINQ6ZT62 677 aa8.65□□□□□ -1.02
PTCD3-215ENST00000484203 HDGFL2Q7Z4V5 671 aaPredicted RBP8.65□□□□□ -1.02
PTCD3-215ENST00000484203 MRPL50Q8N5N7 158 aaKnown RBP8.65□□□□□ -1.02
PTCD3-215ENST00000484203 TERF2IPQ9NYB0 399 aa8.65□□□□□ -1.02
PTCD3-215ENST00000484203 SEPT9Q9UHD8 586 aaPredicted RBP8.65□□□□□ -1.02
PTCD3-215ENST00000484203 BLMP54132 1417 aaPredicted RBP8.64□□□□□ -1.03
PTCD3-215ENST00000484203 NINLQ9Y2I6 1382 aa8.64□□□□□ -1.03
PTCD3-215ENST00000484203 C3orf80F5H4A9 247 aa8.64□□□□□ -1.03
PTCD3-215ENST00000484203 FAM98CQ17RN3 349 aaKnown RBP8.64□□□□□ -1.03
PTCD3-215ENST00000484203 TPRNQ4KMQ1 711 aa8.64□□□□□ -1.03
PTCD3-215ENST00000484203 NUTM2GQ5VZR2 741 aa8.64□□□□□ -1.03
PTCD3-215ENST00000484203 ARHGEF28Q8N1W1 1705 aaKnown RBP8.63□□□□□ -1.03
PTCD3-215ENST00000484203 SPATA31A1Q5TZJ5 1347 aa8.63□□□□□ -1.03
PTCD3-215ENST00000484203 MAP2K5Q13163 448 aa8.63□□□□□ -1.03
PTCD3-215ENST00000484203 CHRNA2Q15822 529 aa8.63□□□□□ -1.03
PTCD3-215ENST00000484203 TCP11L2Q8N4U5 519 aa8.63□□□□□ -1.03
PTCD3-215ENST00000484203 RBM46Q8TBY0 533 aaKnown RBP8.63□□□□□ -1.03
PTCD3-215ENST00000484203 CDCA7Q9BWT1 371 aaPredicted RBP8.63□□□□□ -1.03
PTCD3-215ENST00000484203 STRN4Q9NRL3 753 aa8.63□□□□□ -1.03
PTCD3-215ENST00000484203 ADGRG1Q9Y653 693 aa8.63□□□□□ -1.03
PTCD3-215ENST00000484203 AATKQ6ZMQ8 1374 aa8.62□□□□□ -1.03
PTCD3-215ENST00000484203 TTC21BQ7Z4L5 1316 aa8.62□□□□□ -1.03
PTCD3-215ENST00000484203 GOLGA8CPA6NN73 597 aa8.62□□□□□ -1.03
PTCD3-215ENST00000484203 IRF6O14896 467 aa8.62□□□□□ -1.03
PTCD3-215ENST00000484203 BAG6P46379 1132 aa8.62□□□□□ -1.03
PTCD3-215ENST00000484203 PDE3BQ13370 1112 aa8.62□□□□□ -1.03
PTCD3-215ENST00000484203 FAM196AQ6ZSG2 479 aa8.62□□□□□ -1.03
PTCD3-215ENST00000484203 TMC1Q8TDI8 760 aa8.62□□□□□ -1.03
PTCD3-215ENST00000484203 KTN1Q86UP2 1357 aaKnown RBP8.61□□□□□ -1.03
PTCD3-215ENST00000484203 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.61□□□□□ -1.03
PTCD3-215ENST00000484203 OATP04181 439 aa8.61□□□□□ -1.03
PTCD3-215ENST00000484203 TMF1P82094 1093 aa8.61□□□□□ -1.03
PTCD3-215ENST00000484203 LAPTM4BQ86VI4 370 aa8.61□□□□□ -1.03
PTCD3-215ENST00000484203 KCTD12Q96CX2 325 aaKnown RBP8.61□□□□□ -1.03
PTCD3-215ENST00000484203 CPSF1Q10570 1443 aaKnown RBP8.61□□□□□ -1.03
PTCD3-215ENST00000484203 SSH2Q76I76 1423 aa8.61□□□□□ -1.03
PTCD3-215ENST00000484203 ITSN1Q15811 1721 aa8.6□□□□□ -1.03
PTCD3-215ENST00000484203 ST20-MTHFSA0A0A6YYL1 179 aa8.6□□□□□ -1.03
PTCD3-215ENST00000484203 EYA1Q99502 592 aa8.6□□□□□ -1.03
PTCD3-215ENST00000484203 COL14A1Q05707 1796 aaKnown RBP8.6□□□□□ -1.03
PTCD3-215ENST00000484203 EP400Q96L91 3159 aa8.6□□□□□ -1.03
PTCD3-215ENST00000484203 TRPM3Q9HCF6 1732 aaPredicted RBP8.6□□□□□ -1.03
PTCD3-215ENST00000484203 NWD2Q9ULI1 1742 aa8.6□□□□□ -1.03
PTCD3-215ENST00000484203 SRCAPQ6ZRS2 3230 aa8.59□□□□□ -1.03
PTCD3-215ENST00000484203 ALS2Q96Q42 1657 aa8.59□□□□□ -1.03
PTCD3-215ENST00000484203 TRPM1Q7Z4N2 1603 aa8.59□□□□□ -1.03
PTCD3-215ENST00000484203 LARP1Q6PKG0 1096 aaKnown RBP8.59□□□□□ -1.03
PTCD3-215ENST00000484203 METTL3Q86U44 580 aaKnown RBP8.59□□□□□ -1.03
PTCD3-215ENST00000484203 ARHGEF25Q86VW2 580 aa8.59□□□□□ -1.03
PTCD3-215ENST00000484203 PXYLP1Q8TE99 480 aa8.59□□□□□ -1.03
PTCD3-215ENST00000484203 CCDC102AQ96A19 550 aa8.59□□□□□ -1.03
PTCD3-215ENST00000484203 USP35Q9P2H5 1018 aa8.59□□□□□ -1.03
PTCD3-215ENST00000484203 USP31Q70CQ4 1352 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms