RNA–Protein interactions for RNA: ENST00000484087.5

BRCA1-216, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 1,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-216ENST00000484087 KCNQ4P56696 695 aa9.28□□□□□ -0.92
BRCA1-216ENST00000484087 AEBP1Q8IUX7 1158 aa9.28□□□□□ -0.92
BRCA1-216ENST00000484087 SYTL4Q96C24 671 aaPredicted RBP9.28□□□□□ -0.92
BRCA1-216ENST00000484087 ANO8Q9HCE9 1232 aaPredicted RBP9.28□□□□□ -0.92
BRCA1-216ENST00000484087 VIRMAQ69YN4 1812 aaKnown RBP9.28□□□□□ -0.92
BRCA1-216ENST00000484087 KIF24Q5T7B8 1368 aa9.28□□□□□ -0.92
BRCA1-216ENST00000484087 PAPPAQ13219 1627 aa9.28□□□□□ -0.92
BRCA1-216ENST00000484087 PROM2Q8N271 834 aa9.28□□□□□ -0.92
BRCA1-216ENST00000484087 ZCRB1Q8TBF4 217 aaKnown RBP9.28□□□□□ -0.92
BRCA1-216ENST00000484087 GTF3C3Q9Y5Q9 886 aa9.28□□□□□ -0.92
BRCA1-216ENST00000484087 LY75O60449 1722 aa9.27□□□□□ -0.93
BRCA1-216ENST00000484087 TATP17735 454 aaPredicted RBP9.27□□□□□ -0.93
BRCA1-216ENST00000484087 RAPGEF4Q8WZA2 1011 aa9.27□□□□□ -0.93
BRCA1-216ENST00000484087 BCL11BQ9C0K0 894 aaPredicted RBP9.27□□□□□ -0.93
BRCA1-216ENST00000484087 PDGFDQ9GZP0 370 aaPredicted RBP9.27□□□□□ -0.93
BRCA1-216ENST00000484087 MYBBP1AQ9BQG0 1328 aaKnown RBP9.27□□□□□ -0.93
BRCA1-216ENST00000484087 BCL9O00512 1426 aa9.27□□□□□ -0.93
BRCA1-216ENST00000484087 COL3A1P02461 1466 aaPredicted RBP9.27□□□□□ -0.93
BRCA1-216ENST00000484087 CYP27B1O15528 508 aa9.26□□□□□ -0.93
BRCA1-216ENST00000484087 HNRNPUQ00839 825 aaKnown RBP eCLIP9.26□□□□□ -0.93
BRCA1-216ENST00000484087 CASZ1Q86V15 1759 aa9.26□□□□□ -0.93
BRCA1-216ENST00000484087 IGSF1Q8N6C5 1336 aa9.25□□□□□ -0.93
BRCA1-216ENST00000484087 PRIM1P49642 420 aaKnown RBP9.25□□□□□ -0.93
BRCA1-216ENST00000484087 MTHFSP49914 203 aa9.25□□□□□ -0.93
BRCA1-216ENST00000484087 FAM9BQ8IZU0 186 aa9.25□□□□□ -0.93
BRCA1-216ENST00000484087 PCDH11XQ9BZA7 1347 aa9.24□□□□□ -0.93
BRCA1-216ENST00000484087 PCDH11YQ9BZA8 1340 aa9.24□□□□□ -0.93
BRCA1-216ENST00000484087 HMOX1P09601 288 aa9.24□□□□□ -0.93
BRCA1-216ENST00000484087 TXNRD1Q16881 649 aa9.24□□□□□ -0.93
BRCA1-216ENST00000484087 PHF12Q96QT6 1004 aa9.24□□□□□ -0.93
BRCA1-216ENST00000484087 C5P01031 1676 aa9.24□□□□□ -0.93
BRCA1-216ENST00000484087 LRP5O75197 1615 aa9.24□□□□□ -0.93
BRCA1-216ENST00000484087 PARD3Q8TEW0 1356 aa9.23□□□□□ -0.93
BRCA1-216ENST00000484087 TAF1LQ8IZX4 1826 aa9.23□□□□□ -0.93
BRCA1-216ENST00000484087 IL13P35225 146 aa9.23□□□□□ -0.93
BRCA1-216ENST00000484087 MNX1P50219 401 aaPredicted RBP9.23□□□□□ -0.93
BRCA1-216ENST00000484087 LRRC4BQ9NT99 713 aa9.23□□□□□ -0.93
BRCA1-216ENST00000484087 ZNF827Q17R98 1081 aa9.22□□□□□ -0.93
BRCA1-216ENST00000484087 CCDC184Q52MB2 194 aa9.22□□□□□ -0.93
BRCA1-216ENST00000484087 SULT6B1Q6IMI4 303 aa9.22□□□□□ -0.93
BRCA1-216ENST00000484087 KDM6AO15550 1401 aaPredicted RBP9.22□□□□□ -0.93
BRCA1-216ENST00000484087 PLSCR1O15162 318 aa9.21□□□□□ -0.93
BRCA1-216ENST00000484087 MPRIPQ6WCQ1 1025 aa9.21□□□□□ -0.93
BRCA1-216ENST00000484087 SCN11AQ9UI33 1791 aa9.21□□□□□ -0.93
BRCA1-216ENST00000484087 PHKG2P15735 406 aa9.21□□□□□ -0.94
BRCA1-216ENST00000484087 NPC1L1Q9UHC9 1359 aa9.2□□□□□ -0.94
BRCA1-216ENST00000484087 SMIM5Q71RC9 77 aa9.2□□□□□ -0.94
BRCA1-216ENST00000484087 IFNLR1Q8IU57 520 aaPredicted RBP9.2□□□□□ -0.94
BRCA1-216ENST00000484087 KDRP35968 1356 aa9.19□□□□□ -0.94
BRCA1-216ENST00000484087 PALLDQ8WX93 1383 aa9.19□□□□□ -0.94
BRCA1-216ENST00000484087 UTRNP46939 3433 aa9.19□□□□□ -0.94
BRCA1-216ENST00000484087 U2SURPO15042 1029 aaKnown RBP9.19□□□□□ -0.94
BRCA1-216ENST00000484087 ZBTB7AO95365 584 aa9.19□□□□□ -0.94
BRCA1-216ENST00000484087 PPP2R1AP30153 589 aa9.19□□□□□ -0.94
BRCA1-216ENST00000484087 ZNF530Q6P9A1 599 aaPredicted RBP9.19□□□□□ -0.94
BRCA1-216ENST00000484087 PNISRQ8TF01 805 aaKnown RBP9.19□□□□□ -0.94
BRCA1-216ENST00000484087 SPG7Q9UQ90 795 aa9.19□□□□□ -0.94
BRCA1-216ENST00000484087 GOLGB1Q14789 3259 aaKnown RBP9.19□□□□□ -0.94
BRCA1-216ENST00000484087 ZBED9Q6R2W3 1325 aa9.18□□□□□ -0.94
BRCA1-216ENST00000484087 C4BP0C0L5 1744 aa9.18□□□□□ -0.94
BRCA1-216ENST00000484087 QSER1Q2KHR3 1735 aa9.18□□□□□ -0.94
BRCA1-216ENST00000484087 DIAPH1O60610 1272 aaKnown RBP9.18□□□□□ -0.94
BRCA1-216ENST00000484087 NEFLP07196 543 aa9.18□□□□□ -0.94
BRCA1-216ENST00000484087 NBPF14Q5TI25 921 aa9.18□□□□□ -0.94
BRCA1-216ENST00000484087 PELP1Q8IZL8 1130 aaKnown RBP9.18□□□□□ -0.94
BRCA1-216ENST00000484087 PIGBQ92521 554 aa9.18□□□□□ -0.94
BRCA1-216ENST00000484087 SLC15A2Q16348 729 aa9.17□□□□□ -0.94
BRCA1-216ENST00000484087 AMIGO3Q86WK7 504 aa9.17□□□□□ -0.94
BRCA1-216ENST00000484087 IFNL2Q8IZJ0 200 aa9.17□□□□□ -0.94
BRCA1-216ENST00000484087 STK32BQ9NY57 414 aa9.17□□□□□ -0.94
BRCA1-216ENST00000484087 CCNL1Q9UK58 526 aaPredicted RBP9.17□□□□□ -0.94
BRCA1-216ENST00000484087 ASAP1Q9ULH1 1129 aa9.17□□□□□ -0.94
BRCA1-216ENST00000484087 UBR3Q6ZT12 1888 aa9.17□□□□□ -0.94
BRCA1-216ENST00000484087 COL5A3P25940 1745 aaPredicted RBP9.17□□□□□ -0.94
BRCA1-216ENST00000484087 TJP1Q07157 1748 aa9.17□□□□□ -0.94
BRCA1-216ENST00000484087 DLG5Q8TDM6 1919 aa9.16□□□□□ -0.94
BRCA1-216ENST00000484087 ADAMTS7Q9UKP4 1686 aa9.16□□□□□ -0.94
BRCA1-216ENST00000484087 NKX1-1Q15270 411 aaPredicted RBP9.15□□□□□ -0.94
BRCA1-216ENST00000484087 MTHFSDQ2M296 383 aaKnown RBP9.15□□□□□ -0.94
BRCA1-216ENST00000484087 LCE2DQ5TA82 110 aaPredicted RBP9.15□□□□□ -0.94
BRCA1-216ENST00000484087 TMOD3Q9NYL9 352 aa9.15□□□□□ -0.94
BRCA1-216ENST00000484087 SIPA1L3O60292 1781 aaPredicted RBP9.15□□□□□ -0.94
BRCA1-216ENST00000484087 PNPLA7Q6ZV29 1317 aa9.15□□□□□ -0.94
BRCA1-216ENST00000484087 PLEKHO1Q53GL0 409 aaPredicted RBP9.15□□□□□ -0.95
BRCA1-216ENST00000484087 LGR6Q9HBX8 967 aa9.15□□□□□ -0.95
BRCA1-216ENST00000484087 PRKAR2BP31323 418 aa9.14□□□□□ -0.95
BRCA1-216ENST00000484087 ITPK1Q13572 414 aa9.14□□□□□ -0.95
BRCA1-216ENST00000484087 WDR43Q15061 677 aaKnown RBP eCLIP9.14□□□□□ -0.95
BRCA1-216ENST00000484087 C1orf141Q5JVX7 400 aa9.14□□□□□ -0.95
BRCA1-216ENST00000484087 ASTLQ6HA08 431 aaPredicted RBP9.14□□□□□ -0.95
BRCA1-216ENST00000484087 LINC00116Q8NCU8 138 aa9.14□□□□□ -0.95
BRCA1-216ENST00000484087 PHACTR3Q96KR7 559 aa9.14□□□□□ -0.95
BRCA1-216ENST00000484087 SLC4A9Q96Q91 983 aa9.14□□□□□ -0.95
BRCA1-216ENST00000484087 ATG3Q9NT62 314 aa9.14□□□□□ -0.95
BRCA1-216ENST00000484087 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.14□□□□□ -0.954e-6■■■■■ 27.4
BRCA1-216ENST00000484087 METRNQ9UJH8 293 aa9.14□□□□□ -0.95
BRCA1-216ENST00000484087 C4AP0C0L4 1744 aa9.14□□□□□ -0.95
BRCA1-216ENST00000484087 MYH14Q7Z406 1995 aaKnown RBP9.14□□□□□ -0.95
BRCA1-216ENST00000484087 MRC1P22897 1456 aa9.13□□□□□ -0.95
BRCA1-216ENST00000484087 PHF14O94880 888 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms