RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 MKNK1Q9BUB5 465 aa13.09□□□□□ -0.31
MCF2-207ENST00000483690 J3QL48 77 aa13.08□□□□□ -0.32
MCF2-207ENST00000483690 GDF9O60383 454 aa13.08□□□□□ -0.32
MCF2-207ENST00000483690 ZIC2O95409 532 aaPredicted RBP13.08□□□□□ -0.32
MCF2-207ENST00000483690 EPHA4P54764 986 aa13.08□□□□□ -0.32
MCF2-207ENST00000483690 CBLBQ13191 982 aa13.08□□□□□ -0.32
MCF2-207ENST00000483690 FKBP5Q13451 457 aaPredicted RBP13.08□□□□□ -0.32
MCF2-207ENST00000483690 SOWAHDA6NJG2 315 aa13.07□□□□□ -0.32
MCF2-207ENST00000483690 TNFRSF10AO00220 468 aa13.07□□□□□ -0.32
MCF2-207ENST00000483690 FOXO3O43524 673 aa13.07□□□□□ -0.32
MCF2-207ENST00000483690 PTCD1O75127 700 aaKnown RBP13.07□□□□□ -0.32
MCF2-207ENST00000483690 WDR4P57081 412 aaKnown RBP13.07□□□□□ -0.32
MCF2-207ENST00000483690 ITPKCQ96DU7 683 aa13.07□□□□□ -0.32
MCF2-207ENST00000483690 ABL1P00519 1130 aa13.06□□□□□ -0.32
MCF2-207ENST00000483690 RGS22Q8NE09 1264 aa13.06□□□□□ -0.32
MCF2-207ENST00000483690 GAS2L2Q8NHY3 880 aa13.06□□□□□ -0.32
MCF2-207ENST00000483690 XAGE2Q96GT9 111 aa13.06□□□□□ -0.32
MCF2-207ENST00000483690 TSPAN10Q9H1Z9 355 aaPredicted RBP13.06□□□□□ -0.32
MCF2-207ENST00000483690 ATAD2Q6PL18 1390 aa13.06□□□□□ -0.32
MCF2-207ENST00000483690 A6NJY4 79 aa13.05□□□□□ -0.32
MCF2-207ENST00000483690 IL2RAP01589 272 aa13.05□□□□□ -0.32
MCF2-207ENST00000483690 SMTNP53814 917 aa13.05□□□□□ -0.32
MCF2-207ENST00000483690 Q6ZVU0 165 aa13.05□□□□□ -0.32
MCF2-207ENST00000483690 PURBQ96QR8 312 aaKnown RBP13.05□□□□□ -0.32
MCF2-207ENST00000483690 KLF16Q9BXK1 252 aaPredicted RBP13.05□□□□□ -0.32
MCF2-207ENST00000483690 EGFL7Q9UHF1 273 aa13.05□□□□□ -0.32
MCF2-207ENST00000483690 CNKSR1Q969H4 720 aa13.04□□□□□ -0.32
MCF2-207ENST00000483690 COL26A1Q96A83 441 aa13.04□□□□□ -0.32
MCF2-207ENST00000483690 VTI1AQ96AJ9 217 aa13.04□□□□□ -0.32
MCF2-207ENST00000483690 ESYT1Q9BSJ8 1104 aa13.04□□□□□ -0.32
MCF2-207ENST00000483690 ZFAND3Q9H8U3 227 aa13.04□□□□□ -0.32
MCF2-207ENST00000483690 TOR4AQ9NXH8 423 aa13.04□□□□□ -0.32
MCF2-207ENST00000483690 SCHIP1Q9P0W5 487 aaPredicted RBP13.04□□□□□ -0.32
MCF2-207ENST00000483690 SEPT3Q9UH03 358 aa13.04□□□□□ -0.32
MCF2-207ENST00000483690 A0A1W2PRU2 124 aa13.03□□□□□ -0.32
MCF2-207ENST00000483690 CLN3Q13286 438 aa13.03□□□□□ -0.32
MCF2-207ENST00000483690 MTFR1Q15390 333 aa13.03□□□□□ -0.32
MCF2-207ENST00000483690 TLR1Q15399 786 aa13.03□□□□□ -0.32
MCF2-207ENST00000483690 SLC9A9Q8IVB4 645 aa13.03□□□□□ -0.32
MCF2-207ENST00000483690 CHMP7Q8WUX9 453 aaPredicted RBP13.03□□□□□ -0.32
MCF2-207ENST00000483690 C21orf2O43822 256 aa13.02□□□□□ -0.33
MCF2-207ENST00000483690 PPP1R12BO60237 982 aaPredicted RBP13.02□□□□□ -0.33
MCF2-207ENST00000483690 FOXK2Q01167 660 aa13.02□□□□□ -0.33
MCF2-207ENST00000483690 NPM2Q86SE8 214 aaKnown RBP13.02□□□□□ -0.33
MCF2-207ENST00000483690 KDF1Q8NAX2 398 aaPredicted RBP13.02□□□□□ -0.33
MCF2-207ENST00000483690 GTF3C2Q8WUA4 911 aaPredicted RBP13.02□□□□□ -0.33
MCF2-207ENST00000483690 BIN2Q9UBW5 565 aaPredicted RBP13.02□□□□□ -0.33
MCF2-207ENST00000483690 TIMP2P16035 220 aa13.01□□□□□ -0.33
MCF2-207ENST00000483690 SMPD1P17405 629 aa13.01□□□□□ -0.33
MCF2-207ENST00000483690 PTGIRP43119 386 aa13.01□□□□□ -0.33
MCF2-207ENST00000483690 PRR20EP86478 221 aa13.01□□□□□ -0.33
MCF2-207ENST00000483690 PRR20CP86479 221 aa13.01□□□□□ -0.33
MCF2-207ENST00000483690 PRR20DP86480 221 aa13.01□□□□□ -0.33
MCF2-207ENST00000483690 PRR20BP86481 221 aa13.01□□□□□ -0.33
MCF2-207ENST00000483690 PRR20AP86496 221 aa13.01□□□□□ -0.33
MCF2-207ENST00000483690 ZNF211Q13398 564 aaPredicted RBP13.01□□□□□ -0.33
MCF2-207ENST00000483690 AGBL1Q96MI9 1066 aa13.01□□□□□ -0.33
MCF2-207ENST00000483690 NLRP3Q96P20 1036 aa13.01□□□□□ -0.33
MCF2-207ENST00000483690 MEN1O00255 615 aa13□□□□□ -0.33
MCF2-207ENST00000483690 RELBQ01201 579 aa13□□□□□ -0.33
MCF2-207ENST00000483690 TBCELQ5QJ74 424 aa13□□□□□ -0.33
MCF2-207ENST00000483690 CAPN12Q6ZSI9 719 aa13□□□□□ -0.33
MCF2-207ENST00000483690 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13□□□□□ -0.33
MCF2-207ENST00000483690 H3BRB1 525 aa12.99□□□□□ -0.33
MCF2-207ENST00000483690 CDK2AP1O14519 115 aa12.99□□□□□ -0.33
MCF2-207ENST00000483690 NBPF15Q8N660 670 aa12.99□□□□□ -0.33
MCF2-207ENST00000483690 TUT1Q9H6E5 874 aaKnown RBP12.99□□□□□ -0.33
MCF2-207ENST00000483690 ANO2Q9NQ90 1003 aa12.99□□□□□ -0.33
MCF2-207ENST00000483690 CHMP3Q9Y3E7 222 aa12.99□□□□□ -0.33
MCF2-207ENST00000483690 HRH3Q9Y5N1 445 aa12.99□□□□□ -0.33
MCF2-207ENST00000483690 ICMTO60725 284 aa12.98□□□□□ -0.33
MCF2-207ENST00000483690 NAA30Q147X3 362 aaPredicted RBP12.98□□□□□ -0.33
MCF2-207ENST00000483690 TRIM67Q6ZTA4 783 aa12.98□□□□□ -0.33
MCF2-207ENST00000483690 GLYCTKQ8IVS8 523 aa12.98□□□□□ -0.33
MCF2-207ENST00000483690 STAG2Q8N3U4 1231 aa12.98□□□□□ -0.33
MCF2-207ENST00000483690 PSMA6P60900 246 aaKnown RBP12.97□□□□□ -0.33
MCF2-207ENST00000483690 DNMT3AQ9Y6K1 912 aaPredicted RBP12.97□□□□□ -0.33
MCF2-207ENST00000483690 CENPCQ03188 943 aa12.96□□□□□ -0.33
MCF2-207ENST00000483690 SF3B2Q13435 895 aaKnown RBP12.96□□□□□ -0.33
MCF2-207ENST00000483690 HPS1Q92902 700 aa12.96□□□□□ -0.33
MCF2-207ENST00000483690 C2orf49Q9BVC5 232 aaPredicted RBP12.96□□□□□ -0.33
MCF2-207ENST00000483690 ZNF395Q9H8N7 513 aaPredicted RBP12.96□□□□□ -0.33
MCF2-207ENST00000483690 FKBP4Q02790 459 aaKnown RBP eCLIP12.95□□□□□ -0.34
MCF2-207ENST00000483690 FOXD4L5Q5VV16 416 aaPredicted RBP12.95□□□□□ -0.34
MCF2-207ENST00000483690 MEIOBQ8N635 442 aa12.95□□□□□ -0.34
MCF2-207ENST00000483690 FOXD4L4Q8WXT5 416 aaPredicted RBP12.95□□□□□ -0.34
MCF2-207ENST00000483690 IQSEC3Q9UPP2 1182 aaPredicted RBP12.95□□□□□ -0.34
MCF2-207ENST00000483690 HELQQ8TDG4 1101 aa12.94□□□□□ -0.34
MCF2-207ENST00000483690 FHDC1Q9C0D6 1143 aaPredicted RBP12.94□□□□□ -0.34
MCF2-207ENST00000483690 USP3Q9Y6I4 520 aa12.94□□□□□ -0.34
MCF2-207ENST00000483690 GTF2E1P29083 439 aaPredicted RBP12.93□□□□□ -0.34
MCF2-207ENST00000483690 MARSP56192 900 aaKnown RBP12.93□□□□□ -0.34
MCF2-207ENST00000483690 RANGAP1P46060 587 aaPredicted RBP12.92□□□□□ -0.34
MCF2-207ENST00000483690 MTMR3Q13615 1198 aa12.92□□□□□ -0.34
MCF2-207ENST00000483690 C16orf46Q6P387 395 aa12.92□□□□□ -0.34
MCF2-207ENST00000483690 ZSCAN10Q96SZ4 725 aaPredicted RBP12.92□□□□□ -0.34
MCF2-207ENST00000483690 TSEN34Q9BSV6 310 aaKnown RBP12.92□□□□□ -0.34
MCF2-207ENST00000483690 SERTM1A2A2V5 107 aa12.91□□□□□ -0.34
MCF2-207ENST00000483690 TMEM214Q6NUQ4 689 aaKnown RBP12.91□□□□□ -0.34
MCF2-207ENST00000483690 CABP1Q9NZU7 370 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms