RNA–Protein interactions for RNA: ENST00000482996.5

VARS-225, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-225ENST00000482996 RBM42Q9BTD8 480 aaKnown RBP18.6■□□□□ 0.57
VARS-225ENST00000482996 TAF1LQ8IZX4 1826 aa18.59■□□□□ 0.57
VARS-225ENST00000482996 TUBGCP6Q96RT7 1819 aa18.59■□□□□ 0.57
VARS-225ENST00000482996 COL23A1Q86Y22 540 aaPredicted RBP18.59■□□□□ 0.57
VARS-225ENST00000482996 SGIP1Q9BQI5 828 aa18.59■□□□□ 0.57
VARS-225ENST00000482996 RNMTO43148 476 aaKnown RBP18.58■□□□□ 0.56
VARS-225ENST00000482996 ZEB1P37275 1124 aaPredicted RBP18.58■□□□□ 0.56
VARS-225ENST00000482996 ITPK1Q13572 414 aa18.58■□□□□ 0.56
VARS-225ENST00000482996 LINC00116Q8NCU8 138 aa18.58■□□□□ 0.56
VARS-225ENST00000482996 GAS2L2Q8NHY3 880 aa18.58■□□□□ 0.56
VARS-225ENST00000482996 ARXQ96QS3 562 aa18.58■□□□□ 0.56
VARS-225ENST00000482996 C4BP0C0L5 1744 aa18.57■□□□□ 0.56
VARS-225ENST00000482996 DCAF8L1A6NGE4 600 aa18.57■□□□□ 0.56
VARS-225ENST00000482996 U2AF1L5P0DN76 240 aaPredicted RBP18.57■□□□□ 0.56
VARS-225ENST00000482996 U2AF1Q01081 240 aaKnown RBP eCLIP18.57■□□□□ 0.56
VARS-225ENST00000482996 SLC52A2Q9HAB3 445 aa18.57■□□□□ 0.56
VARS-225ENST00000482996 LGR6Q9HBX8 967 aa18.57■□□□□ 0.56
VARS-225ENST00000482996 DDX10Q13206 875 aaKnown RBP18.56■□□□□ 0.56
VARS-225ENST00000482996 SCN11AQ9UI33 1791 aa18.55■□□□□ 0.56
VARS-225ENST00000482996 PTCD1O75127 700 aaKnown RBP18.55■□□□□ 0.56
VARS-225ENST00000482996 SSFA2P28290 1259 aa18.55■□□□□ 0.56
VARS-225ENST00000482996 PRKAR2BP31323 418 aa18.55■□□□□ 0.56
VARS-225ENST00000482996 FHDC1Q9C0D6 1143 aaPredicted RBP18.55■□□□□ 0.56
VARS-225ENST00000482996 RSPH6AQ9H0K4 717 aa18.55■□□□□ 0.56
VARS-225ENST00000482996 GNPATO15228 680 aa18.54■□□□□ 0.56
VARS-225ENST00000482996 PHF14O94880 888 aa18.54■□□□□ 0.56
VARS-225ENST00000482996 SLC4A9Q96Q91 983 aa18.54■□□□□ 0.56
VARS-225ENST00000482996 MAP3K5Q99683 1374 aa18.54■□□□□ 0.56
VARS-225ENST00000482996 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.53■□□□□ 0.56
VARS-225ENST00000482996 GNAT3A8MTJ3 354 aa18.53■□□□□ 0.56
VARS-225ENST00000482996 FCHSD2O94868 740 aa18.53■□□□□ 0.56
VARS-225ENST00000482996 RALBP1Q15311 655 aa18.53■□□□□ 0.56
VARS-225ENST00000482996 RC3H1Q5TC82 1133 aaKnown RBP18.52■□□□□ 0.56
VARS-225ENST00000482996 MSL1Q68DK7 614 aa18.52■□□□□ 0.56
VARS-225ENST00000482996 SYT17Q9BSW7 474 aa18.52■□□□□ 0.56
VARS-225ENST00000482996 MRC1P22897 1456 aa18.52■□□□□ 0.55
VARS-225ENST00000482996 ZNF831Q5JPB2 1677 aa18.51■□□□□ 0.55
VARS-225ENST00000482996 TEFQ10587 303 aa18.51■□□□□ 0.55
VARS-225ENST00000482996 PHACTR3Q96KR7 559 aa18.51■□□□□ 0.55
VARS-225ENST00000482996 RTCBQ9Y3I0 505 aaKnown RBP18.51■□□□□ 0.55
VARS-225ENST00000482996 CNTNAP4Q9C0A0 1308 aa18.5■□□□□ 0.55
VARS-225ENST00000482996 UBR3Q6ZT12 1888 aa18.5■□□□□ 0.55
VARS-225ENST00000482996 AMIGO3Q86WK7 504 aa18.5■□□□□ 0.55
VARS-225ENST00000482996 KLHL34Q8N239 644 aa18.5■□□□□ 0.55
VARS-225ENST00000482996 NEFMP07197 916 aa18.49■□□□□ 0.55
VARS-225ENST00000482996 SMIM5Q71RC9 77 aa18.49■□□□□ 0.55
VARS-225ENST00000482996 COL24A1Q17RW2 1714 aa18.49■□□□□ 0.55
VARS-225ENST00000482996 ADAMTS7Q9UKP4 1686 aa18.48■□□□□ 0.55
VARS-225ENST00000482996 ADRA2BP18089 450 aa18.48■□□□□ 0.55
VARS-225ENST00000482996 SLC39A6Q13433 755 aa18.48■□□□□ 0.55
VARS-225ENST00000482996 TRAPPC3LQ5T215 181 aa18.48■□□□□ 0.55
VARS-225ENST00000482996 IL17REQ8NFR9 667 aa18.48■□□□□ 0.55
VARS-225ENST00000482996 RPS6KA4O75676 772 aa18.47■□□□□ 0.55
VARS-225ENST00000482996 TTC5Q8N0Z6 440 aa18.47■□□□□ 0.55
VARS-225ENST00000482996 RTF1Q92541 710 aaKnown RBP18.47■□□□□ 0.55
VARS-225ENST00000482996 CRKLP46109 303 aaKnown RBP18.46■□□□□ 0.55
VARS-225ENST00000482996 VIRMAQ69YN4 1812 aaKnown RBP18.46■□□□□ 0.55
VARS-225ENST00000482996 DNAJC10Q8IXB1 793 aa18.45■□□□□ 0.54
VARS-225ENST00000482996 PNNQ9H307 717 aaKnown RBP18.45■□□□□ 0.54
VARS-225ENST00000482996 COL5A3P25940 1745 aaPredicted RBP18.45■□□□□ 0.54
VARS-225ENST00000482996 RFC4P35249 363 aa18.44■□□□□ 0.54
VARS-225ENST00000482996 VSIG10Q8N0Z9 540 aa18.44■□□□□ 0.54
VARS-225ENST00000482996 MYBBP1AQ9BQG0 1328 aaKnown RBP18.44■□□□□ 0.54
VARS-225ENST00000482996 CEMIPQ8WUJ3 1361 aa18.43■□□□□ 0.54
VARS-225ENST00000482996 HTATSF1O43719 755 aaKnown RBP18.43■□□□□ 0.54
VARS-225ENST00000482996 ARHGEF1Q92888 912 aaKnown RBP18.43■□□□□ 0.54
VARS-225ENST00000482996 CICQ96RK0 1608 aaPredicted RBP18.42■□□□□ 0.54
VARS-225ENST00000482996 ZNF790Q6PG37 636 aa18.42■□□□□ 0.54
VARS-225ENST00000482996 CCDC87Q9NVE4 849 aa18.42■□□□□ 0.54
VARS-225ENST00000482996 KCPQ6ZWJ8 1503 aa18.42■□□□□ 0.54
VARS-225ENST00000482996 TJP1Q07157 1748 aa18.41■□□□□ 0.54
VARS-225ENST00000482996 MYH14Q7Z406 1995 aaKnown RBP18.41■□□□□ 0.54
VARS-225ENST00000482996 NLGN1Q8N2Q7 840 aa18.41■□□□□ 0.54
VARS-225ENST00000482996 CD2APQ9Y5K6 639 aa18.41■□□□□ 0.54
VARS-225ENST00000482996 BTBD11A6QL63 1104 aa18.4■□□□□ 0.54
VARS-225ENST00000482996 CYP19A1P11511 503 aaPredicted RBP18.4■□□□□ 0.54
VARS-225ENST00000482996 INTS5Q6P9B9 1019 aaKnown RBP18.4■□□□□ 0.54
VARS-225ENST00000482996 MCM10Q7L590 875 aa18.4■□□□□ 0.54
VARS-225ENST00000482996 MAPK8IP3Q9UPT6 1336 aa18.4■□□□□ 0.54
VARS-225ENST00000482996 STARD3NLO95772 234 aa18.39■□□□□ 0.53
VARS-225ENST00000482996 ZNF496Q96IT1 587 aaPredicted RBP18.39■□□□□ 0.53
VARS-225ENST00000482996 FMNL2Q96PY5 1086 aa18.39■□□□□ 0.53
VARS-225ENST00000482996 TEX13AQ9BXU3 409 aaPredicted RBP18.39■□□□□ 0.53
VARS-225ENST00000482996 MMP10P09238 476 aa18.38■□□□□ 0.53
VARS-225ENST00000482996 GPR162Q16538 588 aa18.38■□□□□ 0.53
VARS-225ENST00000482996 NLGN2Q8NFZ4 835 aa18.38■□□□□ 0.53
VARS-225ENST00000482996 PLEKHF1Q96S99 279 aa18.38■□□□□ 0.53
VARS-225ENST00000482996 HEG1Q9ULI3 1381 aa18.38■□□□□ 0.53
VARS-225ENST00000482996 GYS1P13807 737 aa18.37■□□□□ 0.53
VARS-225ENST00000482996 NFE2L2Q16236 605 aa18.37■□□□□ 0.53
VARS-225ENST00000482996 SOS1Q07889 1333 aaPredicted RBP18.37■□□□□ 0.53
VARS-225ENST00000482996 SIPA1L3O60292 1781 aaPredicted RBP18.37■□□□□ 0.53
VARS-225ENST00000482996 UBR2Q8IWV8 1755 aa18.37■□□□□ 0.53
VARS-225ENST00000482996 DCTN1Q14203 1278 aa18.36■□□□□ 0.53
VARS-225ENST00000482996 PELP1Q8IZL8 1130 aaKnown RBP18.36■□□□□ 0.53
VARS-225ENST00000482996 PRKRIP1Q9H875 184 aaPredicted RBP18.36■□□□□ 0.53
VARS-225ENST00000482996 ZBTB1Q9Y2K1 713 aa18.36■□□□□ 0.53
VARS-225ENST00000482996 USP42Q9H9J4 1324 aaKnown RBP18.35■□□□□ 0.53
VARS-225ENST00000482996 ZPR1O75312 459 aa18.35■□□□□ 0.53
VARS-225ENST00000482996 YY1P25490 414 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms