RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 GOLGA2Q08379 1002 aa15.97■□□□□ 0.15
SDC1-206ENST00000482879 TMOD3Q9NYL9 352 aa15.97■□□□□ 0.15
SDC1-206ENST00000482879 IL16Q14005 1332 aa15.96■□□□□ 0.15
SDC1-206ENST00000482879 KCNQ2O43526 872 aa15.96■□□□□ 0.15
SDC1-206ENST00000482879 MRC1P22897 1456 aa15.96■□□□□ 0.14
SDC1-206ENST00000482879 BTBD11A6QL63 1104 aa15.95■□□□□ 0.14
SDC1-206ENST00000482879 GNAI1P63096 354 aa15.95■□□□□ 0.14
SDC1-206ENST00000482879 PIGBQ92521 554 aa15.95■□□□□ 0.14
SDC1-206ENST00000482879 IFT57Q9NWB7 429 aa15.95■□□□□ 0.14
SDC1-206ENST00000482879 MIS18AQ9NYP9 233 aa15.95■□□□□ 0.14
SDC1-206ENST00000482879 ZNF853P0CG23 659 aa15.94■□□□□ 0.14
SDC1-206ENST00000482879 CDCA7LQ96GN5 454 aa15.94■□□□□ 0.14
SDC1-206ENST00000482879 CFAP44Q96MT7 982 aa15.94■□□□□ 0.14
SDC1-206ENST00000482879 NHSQ6T4R5 1651 aa15.93■□□□□ 0.14
SDC1-206ENST00000482879 E9PSI1 815 aa15.93■□□□□ 0.14
SDC1-206ENST00000482879 CHL1O00533 1208 aa15.93■□□□□ 0.14
SDC1-206ENST00000482879 SLFN5Q08AF3 891 aa15.93■□□□□ 0.14
SDC1-206ENST00000482879 SPINK5Q9NQ38 1064 aaPredicted RBP15.93■□□□□ 0.14
SDC1-206ENST00000482879 BABAM1Q9NWV8 329 aa15.93■□□□□ 0.14
SDC1-206ENST00000482879 TSPYL4Q9UJ04 414 aa15.93■□□□□ 0.14
SDC1-206ENST00000482879 TRIM37O94972 964 aa15.92■□□□□ 0.14
SDC1-206ENST00000482879 SLC39A6Q13433 755 aa15.92■□□□□ 0.14
SDC1-206ENST00000482879 PTF1AQ7RTS3 328 aa15.92■□□□□ 0.14
SDC1-206ENST00000482879 BCL11BQ9C0K0 894 aaPredicted RBP15.92■□□□□ 0.14
SDC1-206ENST00000482879 MYH16Q9H6N6 1097 aa15.92■□□□□ 0.14
SDC1-206ENST00000482879 BTAF1O14981 1849 aa15.91■□□□□ 0.14
SDC1-206ENST00000482879 KDM3BQ7LBC6 1761 aa15.91■□□□□ 0.14
SDC1-206ENST00000482879 TSR2Q969E8 191 aaKnown RBP15.91■□□□□ 0.14
SDC1-206ENST00000482879 MBIPQ9NS73 344 aa15.91■□□□□ 0.14
SDC1-206ENST00000482879 ASAP1Q9ULH1 1129 aa15.91■□□□□ 0.14
SDC1-206ENST00000482879 KCNQ3O43525 872 aa15.9■□□□□ 0.14
SDC1-206ENST00000482879 ZNF790Q6PG37 636 aa15.9■□□□□ 0.14
SDC1-206ENST00000482879 TTC5Q8N0Z6 440 aa15.9■□□□□ 0.14
SDC1-206ENST00000482879 ATG3Q9NT62 314 aa15.89■□□□□ 0.13
SDC1-206ENST00000482879 FANCIQ9NVI1 1328 aa15.89■□□□□ 0.13
SDC1-206ENST00000482879 TRMT2AQ8IZ69 625 aaKnown RBP15.88■□□□□ 0.13
SDC1-206ENST00000482879 SMARCC1Q92922 1105 aaPredicted RBP15.88■□□□□ 0.13
SDC1-206ENST00000482879 PAPPAQ13219 1627 aa15.87■□□□□ 0.13
SDC1-206ENST00000482879 DUSP27Q5VZP5 1158 aa15.87■□□□□ 0.13
SDC1-206ENST00000482879 PTCD1O75127 700 aaKnown RBP15.86■□□□□ 0.13
SDC1-206ENST00000482879 EIF4A1P60842 406 aaKnown RBP15.86■□□□□ 0.13
SDC1-206ENST00000482879 ZNF496Q96IT1 587 aaPredicted RBP15.86■□□□□ 0.13
SDC1-206ENST00000482879 RBM42Q9BTD8 480 aaKnown RBP15.86■□□□□ 0.13
SDC1-206ENST00000482879 UBR2Q8IWV8 1755 aa15.85■□□□□ 0.13
SDC1-206ENST00000482879 EXOSC9Q06265 439 aaKnown RBP15.85■□□□□ 0.13
SDC1-206ENST00000482879 FMNL2Q96PY5 1086 aa15.85■□□□□ 0.13
SDC1-206ENST00000482879 PALLDQ8WX93 1383 aa15.85■□□□□ 0.13
SDC1-206ENST00000482879 APBA3O96018 575 aa15.84■□□□□ 0.13
SDC1-206ENST00000482879 KRT24Q2M2I5 525 aa15.84■□□□□ 0.13
SDC1-206ENST00000482879 KCPQ6ZWJ8 1503 aa15.84■□□□□ 0.13
SDC1-206ENST00000482879 EP400Q96L91 3159 aa15.83■□□□□ 0.13
SDC1-206ENST00000482879 TNS1Q9HBL0 1735 aaKnown RBP15.83■□□□□ 0.13
SDC1-206ENST00000482879 ELL2O00472 640 aaPredicted RBP15.83■□□□□ 0.12
SDC1-206ENST00000482879 C8orf58Q8NAV2 365 aa15.83■□□□□ 0.12
SDC1-206ENST00000482879 LOC102724428A0A0B4J2F2 783 aa15.82■□□□□ 0.12
SDC1-206ENST00000482879 SIK1P57059 783 aa15.82■□□□□ 0.12
SDC1-206ENST00000482879 SF3B2Q13435 895 aaKnown RBP15.82■□□□□ 0.12
SDC1-206ENST00000482879 ILDR2Q71H61 639 aa15.82■□□□□ 0.12
SDC1-206ENST00000482879 TSPYL6Q8N831 410 aa15.82■□□□□ 0.12
SDC1-206ENST00000482879 HEG1Q9ULI3 1381 aa15.82■□□□□ 0.12
SDC1-206ENST00000482879 LY75O60449 1722 aa15.82■□□□□ 0.12
SDC1-206ENST00000482879 GIGYF1O75420 1035 aaPredicted RBP15.81■□□□□ 0.12
SDC1-206ENST00000482879 SNRPA1P09661 255 aaKnown RBP15.81■□□□□ 0.12
SDC1-206ENST00000482879 PLSCR1O15162 318 aa15.8■□□□□ 0.12
SDC1-206ENST00000482879 ATP6V1AP38606 617 aa15.8■□□□□ 0.12
SDC1-206ENST00000482879 TWISTNBQ3B726 338 aaPredicted RBP15.8■□□□□ 0.12
SDC1-206ENST00000482879 CCDC125Q86Z20 511 aa15.8■□□□□ 0.12
SDC1-206ENST00000482879 VSIG10Q8N0Z9 540 aa15.8■□□□□ 0.12
SDC1-206ENST00000482879 SLC4A9Q96Q91 983 aa15.8■□□□□ 0.12
SDC1-206ENST00000482879 PRAMEF22A3QJZ6 481 aa15.79■□□□□ 0.12
SDC1-206ENST00000482879 VAMP4O75379 141 aa15.79■□□□□ 0.12
SDC1-206ENST00000482879 CCNL1Q9UK58 526 aaPredicted RBP15.79■□□□□ 0.12
SDC1-206ENST00000482879 C5P01031 1676 aa15.79■□□□□ 0.12
SDC1-206ENST00000482879 SOS1Q07889 1333 aaPredicted RBP15.78■□□□□ 0.12
SDC1-206ENST00000482879 HOXB7P09629 217 aa15.78■□□□□ 0.12
SDC1-206ENST00000482879 EIF2S2P20042 333 aaKnown RBP15.78■□□□□ 0.12
SDC1-206ENST00000482879 KCNQ4P56696 695 aa15.78■□□□□ 0.12
SDC1-206ENST00000482879 DNAJC10Q8IXB1 793 aa15.78■□□□□ 0.12
SDC1-206ENST00000482879 TEX13AQ9BXU3 409 aaPredicted RBP15.78■□□□□ 0.12
SDC1-206ENST00000482879 USP16Q9Y5T5 823 aa15.78■□□□□ 0.12
SDC1-206ENST00000482879 ZNF831Q5JPB2 1677 aa15.77■□□□□ 0.12
SDC1-206ENST00000482879 BAG6P46379 1132 aa15.77■□□□□ 0.12
SDC1-206ENST00000482879 ITPK1Q13572 414 aa15.77■□□□□ 0.12
SDC1-206ENST00000482879 NECTIN2Q92692 538 aa15.77■□□□□ 0.12
SDC1-206ENST00000482879 TJP1Q07157 1748 aa15.77■□□□□ 0.11
SDC1-206ENST00000482879 CACNA1FO60840 1977 aa15.76■□□□□ 0.11
SDC1-206ENST00000482879 TAF1LQ8IZX4 1826 aa15.76■□□□□ 0.11
SDC1-206ENST00000482879 STARD3NLO95772 234 aa15.76■□□□□ 0.11
SDC1-206ENST00000482879 CT47B1P0C2W7 299 aaPredicted RBP15.76■□□□□ 0.11
SDC1-206ENST00000482879 EN1Q05925 392 aaPredicted RBP15.76■□□□□ 0.11
SDC1-206ENST00000482879 TXNRD1Q16881 649 aa15.76■□□□□ 0.11
SDC1-206ENST00000482879 SLC27A3Q5K4L6 730 aa15.76■□□□□ 0.11
SDC1-206ENST00000482879 PROM2Q8N271 834 aa15.76■□□□□ 0.11
SDC1-206ENST00000482879 UPF1Q92900 1129 aaKnown RBP eCLIP15.76■□□□□ 0.11
SDC1-206ENST00000482879 CHMP4AQ9BY43 222 aa15.76■□□□□ 0.11
SDC1-206ENST00000482879 LAMB4A4D0S4 1761 aa15.76■□□□□ 0.11
SDC1-206ENST00000482879 RGPD3A6NKT7 1758 aaPredicted RBP15.75■□□□□ 0.11
SDC1-206ENST00000482879 RGPD4Q7Z3J3 1758 aa15.75■□□□□ 0.11
SDC1-206ENST00000482879 HDGFL1Q5TGJ6 251 aa15.75■□□□□ 0.11
SDC1-206ENST00000482879 DEFB132Q7Z7B7 95 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms