RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 SLC52A2Q9HAB3 445 aa13.14□□□□□ -0.31
USP39-215ENST00000481409 MBIPQ9NS73 344 aa13.14□□□□□ -0.31
USP39-215ENST00000481409 RCAN3Q9UKA8 241 aa13.14□□□□□ -0.31
USP39-215ENST00000481409 KDM6AO15550 1401 aaPredicted RBP13.13□□□□□ -0.31
USP39-215ENST00000481409 HOXB7P09629 217 aa13.13□□□□□ -0.31
USP39-215ENST00000481409 THUMPD2Q9BTF0 503 aaKnown RBP13.13□□□□□ -0.31
USP39-215ENST00000481409 QTRT2Q9H974 415 aaKnown RBP13.13□□□□□ -0.31
USP39-215ENST00000481409 LGR6Q9HBX8 967 aa13.13□□□□□ -0.31
USP39-215ENST00000481409 TSPYL4Q9UJ04 414 aa13.13□□□□□ -0.31
USP39-215ENST00000481409 LAS1LQ9Y4W2 734 aaKnown RBP13.13□□□□□ -0.31
USP39-215ENST00000481409 BCL9O00512 1426 aa13.13□□□□□ -0.31
USP39-215ENST00000481409 GLI3P10071 1580 aa13.12□□□□□ -0.31
USP39-215ENST00000481409 DDX54Q8TDD1 881 aaKnown RBP13.12□□□□□ -0.31
USP39-215ENST00000481409 CNKSR2Q8WXI2 1034 aa13.12□□□□□ -0.31
USP39-215ENST00000481409 KDM3BQ7LBC6 1761 aa13.12□□□□□ -0.31
USP39-215ENST00000481409 BTBD11A6QL63 1104 aa13.11□□□□□ -0.31
USP39-215ENST00000481409 CABP4P57796 275 aa13.11□□□□□ -0.31
USP39-215ENST00000481409 ALDH1L2Q3SY69 923 aa13.11□□□□□ -0.31
USP39-215ENST00000481409 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.11□□□□□ -0.31
USP39-215ENST00000481409 TSR2Q969E8 191 aaKnown RBP13.11□□□□□ -0.31
USP39-215ENST00000481409 RNF216Q9NWF9 866 aaPredicted RBP13.11□□□□□ -0.31
USP39-215ENST00000481409 RNF123Q5XPI4 1314 aa13.11□□□□□ -0.31
USP39-215ENST00000481409 BRPF1P55201 1214 aaPredicted RBP13.1□□□□□ -0.31
USP39-215ENST00000481409 EXOSC9Q06265 439 aaKnown RBP13.1□□□□□ -0.31
USP39-215ENST00000481409 FAM98CQ17RN3 349 aaKnown RBP13.1□□□□□ -0.31
USP39-215ENST00000481409 RBM6P78332 1123 aaKnown RBP13.09□□□□□ -0.31
USP39-215ENST00000481409 VAMP4O75379 141 aa13.08□□□□□ -0.32
USP39-215ENST00000481409 TWISTNBQ3B726 338 aaPredicted RBP13.08□□□□□ -0.32
USP39-215ENST00000481409 ZNF790Q6PG37 636 aa13.08□□□□□ -0.32
USP39-215ENST00000481409 NFATC2IPQ8NCF5 419 aa13.08□□□□□ -0.32
USP39-215ENST00000481409 TMOD3Q9NYL9 352 aa13.08□□□□□ -0.32
USP39-215ENST00000481409 HEG1Q9ULI3 1381 aa13.07□□□□□ -0.32
USP39-215ENST00000481409 CACNA1FO60840 1977 aa13.07□□□□□ -0.32
USP39-215ENST00000481409 RARSP54136 660 aaKnown RBP13.07□□□□□ -0.32
USP39-215ENST00000481409 EIF4A1P60842 406 aaKnown RBP13.07□□□□□ -0.32
USP39-215ENST00000481409 TTC5Q8N0Z6 440 aa13.07□□□□□ -0.32
USP39-215ENST00000481409 PAPPAQ13219 1627 aa13.06□□□□□ -0.32
USP39-215ENST00000481409 TOGARAM1Q9Y4F4 1720 aa13.06□□□□□ -0.32
USP39-215ENST00000481409 NEFLP07196 543 aa13.06□□□□□ -0.32
USP39-215ENST00000481409 MS4A1P11836 297 aa13.06□□□□□ -0.32
USP39-215ENST00000481409 ERICH6BQ5W0A0 696 aa13.06□□□□□ -0.32
USP39-215ENST00000481409 MARCH10Q8NA82 808 aaPredicted RBP13.06□□□□□ -0.32
USP39-215ENST00000481409 KIF16BQ96L93 1317 aa13.06□□□□□ -0.32
USP39-215ENST00000481409 ITGB4P16144 1822 aa13.06□□□□□ -0.32
USP39-215ENST00000481409 SEPT12Q8IYM1 358 aa13.05□□□□□ -0.32
USP39-215ENST00000481409 C8orf58Q8NAV2 365 aa13.05□□□□□ -0.32
USP39-215ENST00000481409 FMNL2Q96PY5 1086 aa13.05□□□□□ -0.32
USP39-215ENST00000481409 SUPT16HQ9Y5B9 1047 aaKnown RBP13.05□□□□□ -0.32
USP39-215ENST00000481409 UBR2Q8IWV8 1755 aa13.04□□□□□ -0.32
USP39-215ENST00000481409 A0A0G2JS52 829 aa13.04□□□□□ -0.32
USP39-215ENST00000481409 IPO8O15397 1037 aaKnown RBP13.04□□□□□ -0.32
USP39-215ENST00000481409 HMGB2P26583 209 aaKnown RBP13.04□□□□□ -0.32
USP39-215ENST00000481409 RXRBP28702 533 aa13.04□□□□□ -0.32
USP39-215ENST00000481409 MYT1Q01538 1121 aa13.04□□□□□ -0.32
USP39-215ENST00000481409 CCDC30Q5VVM6 783 aa13.04□□□□□ -0.32
USP39-215ENST00000481409 VSIG10Q8N0Z9 540 aa13.04□□□□□ -0.32
USP39-215ENST00000481409 ARHGAP45Q92619 1136 aa13.04□□□□□ -0.32
USP39-215ENST00000481409 TEX13AQ9BXU3 409 aaPredicted RBP13.04□□□□□ -0.32
USP39-215ENST00000481409 DOT1LQ8TEK3 1739 aa13.04□□□□□ -0.32
USP39-215ENST00000481409 SNRPA1P09661 255 aaKnown RBP13.03□□□□□ -0.32
USP39-215ENST00000481409 RRP1P56182 461 aaKnown RBP13.03□□□□□ -0.32
USP39-215ENST00000481409 TSPYL6Q8N831 410 aa13.03□□□□□ -0.32
USP39-215ENST00000481409 SMARCC1Q92922 1105 aaPredicted RBP13.03□□□□□ -0.32
USP39-215ENST00000481409 MIS18AQ9NYP9 233 aa13.03□□□□□ -0.32
USP39-215ENST00000481409 GIGYF1O75420 1035 aaPredicted RBP13.02□□□□□ -0.33
USP39-215ENST00000481409 PIGBQ92521 554 aa13.02□□□□□ -0.33
USP39-215ENST00000481409 STK31Q9BXU1 1019 aa13.02□□□□□ -0.33
USP39-215ENST00000481409 SMC4Q9NTJ3 1288 aa13.02□□□□□ -0.33
USP39-215ENST00000481409 ERBB4Q15303 1308 aa13.02□□□□□ -0.33
USP39-215ENST00000481409 PDE3AQ14432 1141 aa13.01□□□□□ -0.33
USP39-215ENST00000481409 FAM196AQ6ZSG2 479 aa13.01□□□□□ -0.33
USP39-215ENST00000481409 SSH1Q8WYL5 1049 aa13.01□□□□□ -0.33
USP39-215ENST00000481409 ZNF831Q5JPB2 1677 aa13.01□□□□□ -0.33
USP39-215ENST00000481409 NHSQ6T4R5 1651 aa13.01□□□□□ -0.33
USP39-215ENST00000481409 LAMB4A4D0S4 1761 aa13□□□□□ -0.33
USP39-215ENST00000481409 CICQ96RK0 1608 aaPredicted RBP13□□□□□ -0.33
USP39-215ENST00000481409 PTPRCP08575 1304 aa13□□□□□ -0.33
USP39-215ENST00000481409 PRIM1P49642 420 aaKnown RBP13□□□□□ -0.33
USP39-215ENST00000481409 HDGFL1Q5TGJ6 251 aa13□□□□□ -0.33
USP39-215ENST00000481409 ZKSCAN2Q63HK3 967 aa13□□□□□ -0.33
USP39-215ENST00000481409 KRT27Q7Z3Y8 459 aa13□□□□□ -0.33
USP39-215ENST00000481409 KCPQ6ZWJ8 1503 aa12.99□□□□□ -0.33
USP39-215ENST00000481409 ELL2O00472 640 aaPredicted RBP12.99□□□□□ -0.33
USP39-215ENST00000481409 SLC39A6Q13433 755 aa12.99□□□□□ -0.33
USP39-215ENST00000481409 AAMPQ13685 434 aa12.99□□□□□ -0.33
USP39-215ENST00000481409 MRPL50Q8N5N7 158 aaKnown RBP12.99□□□□□ -0.33
USP39-215ENST00000481409 ZNF496Q96IT1 587 aaPredicted RBP12.99□□□□□ -0.33
USP39-215ENST00000481409 ATG3Q9NT62 314 aa12.99□□□□□ -0.33
USP39-215ENST00000481409 DBF4Q9UBU7 674 aaPredicted RBP12.99□□□□□ -0.33
USP39-215ENST00000481409 KCNQ3O43525 872 aa12.98□□□□□ -0.33
USP39-215ENST00000481409 BCAR3O75815 825 aa12.98□□□□□ -0.33
USP39-215ENST00000481409 CANXP27824 592 aaKnown RBP12.98□□□□□ -0.33
USP39-215ENST00000481409 API5Q9BZZ5 524 aaKnown RBP12.98□□□□□ -0.33
USP39-215ENST00000481409 SBF2Q86WG5 1849 aa12.97□□□□□ -0.33
USP39-215ENST00000481409 KRT24Q2M2I5 525 aa12.97□□□□□ -0.33
USP39-215ENST00000481409 ATF7IPQ6VMQ6 1270 aa12.97□□□□□ -0.33
USP39-215ENST00000481409 SYTL4Q96C24 671 aaPredicted RBP12.97□□□□□ -0.33
USP39-215ENST00000481409 CHMP4BQ9H444 224 aaKnown RBP12.97□□□□□ -0.33
USP39-215ENST00000481409 HYPKQ9NX55 129 aa12.97□□□□□ -0.33
USP39-215ENST00000481409 RGS17Q9UGC6 210 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms