RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 ERVV-2B6SEH9 535 aa22.72■■□□□ 1.23
UPF3A-206ENST00000480362 MYT1Q01538 1121 aa22.72■■□□□ 1.23
UPF3A-206ENST00000480362 ZNF772Q68DY9 489 aaPredicted RBP22.72■■□□□ 1.23
UPF3A-206ENST00000480362 C8orf58Q8NAV2 365 aa22.72■■□□□ 1.23
UPF3A-206ENST00000480362 SIPA1L3O60292 1781 aaPredicted RBP22.71■■□□□ 1.23
UPF3A-206ENST00000480362 TSPYL6Q8N831 410 aa22.71■■□□□ 1.23
UPF3A-206ENST00000480362 MARCH10Q8NA82 808 aaPredicted RBP22.71■■□□□ 1.23
UPF3A-206ENST00000480362 ELL2O00472 640 aaPredicted RBP22.7■■□□□ 1.22
UPF3A-206ENST00000480362 ONECUT3O60422 494 aaPredicted RBP22.7■■□□□ 1.22
UPF3A-206ENST00000480362 MRC1P22897 1456 aa22.7■■□□□ 1.22
UPF3A-206ENST00000480362 KCNQ3O43525 872 aa22.69■■□□□ 1.22
UPF3A-206ENST00000480362 VAMP4O75379 141 aa22.69■■□□□ 1.22
UPF3A-206ENST00000480362 KRT24Q2M2I5 525 aa22.69■■□□□ 1.22
UPF3A-206ENST00000480362 TWISTNBQ3B726 338 aaPredicted RBP22.69■■□□□ 1.22
UPF3A-206ENST00000480362 THSD7AQ9UPZ6 1657 aa22.68■■□□□ 1.22
UPF3A-206ENST00000480362 RARSP54136 660 aaKnown RBP22.67■■□□□ 1.22
UPF3A-206ENST00000480362 KDM3BQ7LBC6 1761 aa22.67■■□□□ 1.22
UPF3A-206ENST00000480362 EIF4A1P60842 406 aaKnown RBP22.66■■□□□ 1.22
UPF3A-206ENST00000480362 TOGARAM1Q9Y4F4 1720 aa22.65■■□□□ 1.22
UPF3A-206ENST00000480362 RNF123Q5XPI4 1314 aa22.65■■□□□ 1.22
UPF3A-206ENST00000480362 BCAR3O75815 825 aa22.65■■□□□ 1.22
UPF3A-206ENST00000480362 SLC39A6Q13433 755 aa22.65■■□□□ 1.22
UPF3A-206ENST00000480362 SEPT12Q8IYM1 358 aa22.65■■□□□ 1.22
UPF3A-206ENST00000480362 ZNF790Q6PG37 636 aa22.64■■□□□ 1.21
UPF3A-206ENST00000480362 ZNF428Q96B54 188 aa22.64■■□□□ 1.21
UPF3A-206ENST00000480362 TMOD3Q9NYL9 352 aa22.64■■□□□ 1.21
UPF3A-206ENST00000480362 RBM6P78332 1123 aaKnown RBP22.63■■□□□ 1.21
UPF3A-206ENST00000480362 RRP1P56182 461 aaKnown RBP22.62■■□□□ 1.21
UPF3A-206ENST00000480362 SSH1Q8WYL5 1049 aa22.62■■□□□ 1.21
UPF3A-206ENST00000480362 BCL2L13Q9BXK5 485 aa22.62■■□□□ 1.21
UPF3A-206ENST00000480362 PRIM1P49642 420 aaKnown RBP22.61■■□□□ 1.21
UPF3A-206ENST00000480362 ALDH1L2Q3SY69 923 aa22.61■■□□□ 1.21
UPF3A-206ENST00000480362 TTC5Q8N0Z6 440 aa22.61■■□□□ 1.21
UPF3A-206ENST00000480362 PIGBQ92521 554 aa22.61■■□□□ 1.21
UPF3A-206ENST00000480362 ITGB4P16144 1822 aa22.6■■□□□ 1.21
UPF3A-206ENST00000480362 ACSBG1Q96GR2 724 aa22.6■■□□□ 1.21
UPF3A-206ENST00000480362 SMC4Q9NTJ3 1288 aa22.6■■□□□ 1.21
UPF3A-206ENST00000480362 RGS17Q9UGC6 210 aaPredicted RBP22.6■■□□□ 1.21
UPF3A-206ENST00000480362 SOS1Q07889 1333 aaPredicted RBP22.59■■□□□ 1.21
UPF3A-206ENST00000480362 SYTL4Q96C24 671 aaPredicted RBP22.59■■□□□ 1.21
UPF3A-206ENST00000480362 DOT1LQ8TEK3 1739 aa22.58■■□□□ 1.21
UPF3A-206ENST00000480362 TCERG1O14776 1098 aaKnown RBP22.58■■□□□ 1.21
UPF3A-206ENST00000480362 PLIN1O60240 522 aa22.58■■□□□ 1.21
UPF3A-206ENST00000480362 NEFLP07196 543 aa22.58■■□□□ 1.21
UPF3A-206ENST00000480362 HEG1Q9ULI3 1381 aa22.58■■□□□ 1.21
UPF3A-206ENST00000480362 BCL9O00512 1426 aa22.57■■□□□ 1.2
UPF3A-206ENST00000480362 GIGYF1O75420 1035 aaPredicted RBP22.57■■□□□ 1.2
UPF3A-206ENST00000480362 HOXB7P09629 217 aa22.57■■□□□ 1.2
UPF3A-206ENST00000480362 RXRBP28702 533 aa22.57■■□□□ 1.2
UPF3A-206ENST00000480362 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.57■■□□□ 1.2
UPF3A-206ENST00000480362 ZNF496Q96IT1 587 aaPredicted RBP22.57■■□□□ 1.2
UPF3A-206ENST00000480362 MRPL50Q8N5N7 158 aaKnown RBP22.56■■□□□ 1.2
UPF3A-206ENST00000480362 FMNL2Q96PY5 1086 aa22.56■■□□□ 1.2
UPF3A-206ENST00000480362 IRX6P78412 446 aaPredicted RBP22.55■■□□□ 1.2
UPF3A-206ENST00000480362 FAM182BQ5T319 152 aa22.55■■□□□ 1.2
UPF3A-206ENST00000480362 FRAT1Q92837 279 aaPredicted RBP22.55■■□□□ 1.2
UPF3A-206ENST00000480362 ATG3Q9NT62 314 aa22.55■■□□□ 1.2
UPF3A-206ENST00000480362 ASAP1Q9ULH1 1129 aa22.55■■□□□ 1.2
UPF3A-206ENST00000480362 KAT6BQ8WYB5 2073 aa22.54■■□□□ 1.2
UPF3A-206ENST00000480362 PAPPAQ13219 1627 aa22.54■■□□□ 1.2
UPF3A-206ENST00000480362 CCDC30Q5VVM6 783 aa22.54■■□□□ 1.2
UPF3A-206ENST00000480362 POTEAQ6S8J7 498 aa22.54■■□□□ 1.2
UPF3A-206ENST00000480362 PRAMEF22A3QJZ6 481 aa22.53■■□□□ 1.2
UPF3A-206ENST00000480362 EIF2S2P20042 333 aaKnown RBP22.53■■□□□ 1.2
UPF3A-206ENST00000480362 BRPF1P55201 1214 aaPredicted RBP22.53■■□□□ 1.2
UPF3A-206ENST00000480362 HDGFL1Q5TGJ6 251 aa22.53■■□□□ 1.2
UPF3A-206ENST00000480362 KRT27Q7Z3Y8 459 aa22.53■■□□□ 1.2
UPF3A-206ENST00000480362 NECTIN2Q92692 538 aa22.53■■□□□ 1.2
UPF3A-206ENST00000480362 GTF3C3Q9Y5Q9 886 aa22.53■■□□□ 1.2
UPF3A-206ENST00000480362 KCNQ2O43526 872 aa22.52■■□□□ 1.2
UPF3A-206ENST00000480362 PTCD1O75127 700 aaKnown RBP22.52■■□□□ 1.2
UPF3A-206ENST00000480362 SNRPA1P09661 255 aaKnown RBP22.52■■□□□ 1.2
UPF3A-206ENST00000480362 CANXP27824 592 aaKnown RBP22.52■■□□□ 1.2
UPF3A-206ENST00000480362 CHMP4AQ9BY43 222 aa22.52■■□□□ 1.2
UPF3A-206ENST00000480362 NOB1Q9ULX3 412 aaKnown RBP22.52■■□□□ 1.2
UPF3A-206ENST00000480362 UBR2Q8IWV8 1755 aa22.51■■□□□ 1.19
UPF3A-206ENST00000480362 FKBP8Q14318 412 aa22.51■■□□□ 1.19
UPF3A-206ENST00000480362 STK31Q9BXU1 1019 aa22.51■■□□□ 1.19
UPF3A-206ENST00000480362 KCPQ6ZWJ8 1503 aa22.51■■□□□ 1.19
UPF3A-206ENST00000480362 BRWD3Q6RI45 1802 aa22.5■■□□□ 1.19
UPF3A-206ENST00000480362 SLC4A2P04920 1241 aa22.5■■□□□ 1.19
UPF3A-206ENST00000480362 ZKSCAN2Q63HK3 967 aa22.5■■□□□ 1.19
UPF3A-206ENST00000480362 KIF16BQ96L93 1317 aa22.5■■□□□ 1.19
UPF3A-206ENST00000480362 IPO8O15397 1037 aaKnown RBP22.48■■□□□ 1.19
UPF3A-206ENST00000480362 C20orf194Q5TEA3 1177 aa22.48■■□□□ 1.19
UPF3A-206ENST00000480362 RBM42Q9BTD8 480 aaKnown RBP22.48■■□□□ 1.19
UPF3A-206ENST00000480362 USP16Q9Y5T5 823 aa22.48■■□□□ 1.19
UPF3A-206ENST00000480362 C5P01031 1676 aa22.47■■□□□ 1.19
UPF3A-206ENST00000480362 FAM196AQ6ZSG2 479 aa22.46■■□□□ 1.19
UPF3A-206ENST00000480362 TNNQ9UQP3 1299 aa22.46■■□□□ 1.19
UPF3A-206ENST00000480362 PDE3AQ14432 1141 aa22.45■■□□□ 1.18
UPF3A-206ENST00000480362 PTF1AQ7RTS3 328 aa22.45■■□□□ 1.18
UPF3A-206ENST00000480362 VSIG10Q8N0Z9 540 aa22.45■■□□□ 1.18
UPF3A-206ENST00000480362 ARHGAP45Q92619 1136 aa22.45■■□□□ 1.18
UPF3A-206ENST00000480362 SMARCC1Q92922 1105 aaPredicted RBP22.45■■□□□ 1.18
UPF3A-206ENST00000480362 CHPF2Q9P2E5 772 aa22.45■■□□□ 1.18
UPF3A-206ENST00000480362 NHSQ6T4R5 1651 aa22.44■■□□□ 1.18
UPF3A-206ENST00000480362 ATF7IPQ6VMQ6 1270 aa22.44■■□□□ 1.18
UPF3A-206ENST00000480362 G2E3Q7L622 706 aa22.44■■□□□ 1.18
UPF3A-206ENST00000480362 DBF4Q9UBU7 674 aaPredicted RBP22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms