RNA–Protein interactions for RNA: ENST00000477440.6

ARHGEF3-208, Transcript of Rho guanine nucleotide exchange factor 3, human

TSL 3

Gene ARHGEF3, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ARHGEF3-208	ENST00000477440	MAP3K5	Q99683	1374 aa		33.86	■■■■□ 3.01
ARHGEF3-208	ENST00000477440	RNMT	O43148	476 aa	Known RBP	33.86	■■■■□ 3.01
ARHGEF3-208	ENST00000477440	AKT1S1	Q96B36	256 aa		33.86	■■■■□ 3.01
ARHGEF3-208	ENST00000477440	PDGFD	Q9GZP0	370 aa	Predicted RBP	33.86	■■■■□ 3.01
ARHGEF3-208	ENST00000477440	NFATC2IP	Q8NCF5	419 aa		33.85	■■■■□ 3.01
ARHGEF3-208	ENST00000477440	C4B	P0C0L5	1744 aa		33.83	■■■■□ 3.01
ARHGEF3-208	ENST00000477440	LOC102724428	A0A0B4J2F2	783 aa		33.82	■■■■□ 3
ARHGEF3-208	ENST00000477440	SIK1	P57059	783 aa		33.82	■■■■□ 3
ARHGEF3-208	ENST00000477440	DLG5	Q8TDM6	1919 aa		33.81	■■■■□ 3
ARHGEF3-208	ENST00000477440	ZNF831	Q5JPB2	1677 aa		33.81	■■■■□ 3
ARHGEF3-208	ENST00000477440	SIPA1L3	O60292	1781 aa	Predicted RBP	33.81	■■■■□ 3
ARHGEF3-208	ENST00000477440	SLC52A2	Q9HAB3	445 aa		33.81	■■■■□ 3
ARHGEF3-208	ENST00000477440	GNAT3	A8MTJ3	354 aa		33.8	■■■■□ 3
ARHGEF3-208	ENST00000477440	COL5A3	P25940	1745 aa	Predicted RBP	33.76	■■■■□ 3
ARHGEF3-208	ENST00000477440	IL17RE	Q8NFR9	667 aa		33.76	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	UBR3	Q6ZT12	1888 aa		33.76	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	ATP6V1A	P38606	617 aa		33.75	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	ITPK1	Q13572	414 aa		33.75	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	SLC4A9	Q96Q91	983 aa		33.75	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	PLEKHF1	Q96S99	279 aa		33.75	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	RBM42	Q9BTD8	480 aa	Known RBP	33.75	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	TFCP2L1	Q9NZI6	479 aa		33.75	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	PNPLA7	Q6ZV29	1317 aa		33.75	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	TJP1	Q07157	1748 aa		33.73	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	LINC00116	Q8NCU8	138 aa		33.73	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	UBR2	Q8IWV8	1755 aa		33.72	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	ZBTB7A	O95365	584 aa		33.72	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	CEMIP	Q8WUJ3	1361 aa		33.72	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	CIC	Q96RK0	1608 aa	Predicted RBP	33.71	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	PTCD1	O75127	700 aa	Known RBP	33.71	■■■□□ 2.99
ARHGEF3-208	ENST00000477440	KCP	Q6ZWJ8	1503 aa		33.69	■■■□□ 2.98
ARHGEF3-208	ENST00000477440	NEFM	P07197	916 aa		33.69	■■■□□ 2.98
ARHGEF3-208	ENST00000477440	SLC39A6	Q13433	755 aa		33.69	■■■□□ 2.98
ARHGEF3-208	ENST00000477440	SPON1	Q9HCB6	807 aa		33.69	■■■□□ 2.98
ARHGEF3-208	ENST00000477440	HMGB2	P26583	209 aa	Known RBP	33.68	■■■□□ 2.98
ARHGEF3-208	ENST00000477440	TEF	Q10587	303 aa		33.68	■■■□□ 2.98
ARHGEF3-208	ENST00000477440	AK7	Q96M32	723 aa		33.67	■■■□□ 2.98
ARHGEF3-208	ENST00000477440	MCM10	Q7L590	875 aa		33.66	■■■□□ 2.98
ARHGEF3-208	ENST00000477440	MYH14	Q7Z406	1995 aa	Known RBP	33.66	■■■□□ 2.98
ARHGEF3-208	ENST00000477440	PNN	Q9H307	717 aa	Known RBP	33.66	■■■□□ 2.98
ARHGEF3-208	ENST00000477440	MAPK8IP3	Q9UPT6	1336 aa		33.66	■■■□□ 2.98
ARHGEF3-208	ENST00000477440	AMIGO3	Q86WK7	504 aa		33.65	■■■□□ 2.98
ARHGEF3-208	ENST00000477440	RTF1	Q92541	710 aa	Known RBP	33.65	■■■□□ 2.98
ARHGEF3-208	ENST00000477440	DCTN1	Q14203	1278 aa		33.64	■■■□□ 2.98
ARHGEF3-208	ENST00000477440	ATF5	Q9Y2D1	282 aa	Predicted RBP	33.64	■■■□□ 2.98
ARHGEF3-208	ENST00000477440	COL24A1	Q17RW2	1714 aa		33.63	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	WDR43	Q15061	677 aa	Known RBP eCLIP	33.63	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	NFE2L2	Q16236	605 aa		33.63	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	COL23A1	Q86Y22	540 aa	Predicted RBP	33.63	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	MTFR1L	Q9H019	292 aa		33.63	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	HTATSF1	O43719	755 aa	Known RBP	33.61	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	SMIM5	Q71RC9	77 aa		33.61	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	GNPAT	O15228	680 aa		33.59	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	ANP32C	O43423	234 aa		33.59	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	PTGER2	P43116	358 aa		33.59	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	CCDC146	Q8IYE0	955 aa		33.59	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	ADAMTS8	Q9UP79	889 aa		33.59	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	MSH5	O43196	834 aa		33.58	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	PHF14	O94880	888 aa		33.58	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	CCDC184	Q52MB2	194 aa		33.58	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	SLC16A10	Q8TF71	515 aa		33.58	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	CNTNAP4	Q9C0A0	1308 aa		33.57	■■■□□ 2.97
ARHGEF3-208	ENST00000477440	ZNF790	Q6PG37	636 aa		33.56	■■■□□ 2.96
ARHGEF3-208	ENST00000477440	TTC5	Q8N0Z6	440 aa		33.56	■■■□□ 2.96
ARHGEF3-208	ENST00000477440	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	33.55	■■■□□ 2.96
ARHGEF3-208	ENST00000477440	SSFA2	P28290	1259 aa		33.55	■■■□□ 2.96
ARHGEF3-208	ENST00000477440	DNAJC10	Q8IXB1	793 aa		33.55	■■■□□ 2.96
ARHGEF3-208	ENST00000477440	FLAD1	Q8NFF5	587 aa		33.55	■■■□□ 2.96
ARHGEF3-208	ENST00000477440	SGIP1	Q9BQI5	828 aa		33.55	■■■□□ 2.96
ARHGEF3-208	ENST00000477440	BTBD11	A6QL63	1104 aa		33.54	■■■□□ 2.96
ARHGEF3-208	ENST00000477440	RC3H1	Q5TC82	1133 aa	Known RBP	33.53	■■■□□ 2.96
ARHGEF3-208	ENST00000477440	C4A	P0C0L4	1744 aa		33.53	■■■□□ 2.96
ARHGEF3-208	ENST00000477440	CRKL	P46109	303 aa	Known RBP	33.52	■■■□□ 2.96
ARHGEF3-208	ENST00000477440	ZNF496	Q96IT1	587 aa	Predicted RBP	33.52	■■■□□ 2.96
ARHGEF3-208	ENST00000477440	PPP1R1B	Q9UD71	204 aa	Predicted RBP	33.52	■■■□□ 2.96
ARHGEF3-208	ENST00000477440	KDM3B	Q7LBC6	1761 aa		33.52	■■■□□ 2.96
ARHGEF3-208	ENST00000477440	KCNQ3	O43525	872 aa		33.51	■■■□□ 2.95
ARHGEF3-208	ENST00000477440	TMPO	P42166	694 aa	Known RBP	33.51	■■■□□ 2.95
ARHGEF3-208	ENST00000477440	RUNDC1	Q96C34	613 aa		33.51	■■■□□ 2.95
ARHGEF3-208	ENST00000477440	THUMPD2	Q9BTF0	503 aa	Known RBP	33.51	■■■□□ 2.95
ARHGEF3-208	ENST00000477440	VSIG10	Q8N0Z9	540 aa		33.5	■■■□□ 2.95
ARHGEF3-208	ENST00000477440	HEG1	Q9ULI3	1381 aa		33.49	■■■□□ 2.95
ARHGEF3-208	ENST00000477440	RIPK4	P57078	832 aa		33.49	■■■□□ 2.95
ARHGEF3-208	ENST00000477440	RRP7A	Q9Y3A4	280 aa	Known RBP	33.49	■■■□□ 2.95
ARHGEF3-208	ENST00000477440	RTCB	Q9Y3I0	505 aa	Known RBP	33.49	■■■□□ 2.95
ARHGEF3-208	ENST00000477440	MSL1	Q68DK7	614 aa		33.48	■■■□□ 2.95
ARHGEF3-208	ENST00000477440	RPS6KA4	O75676	772 aa		33.47	■■■□□ 2.95
ARHGEF3-208	ENST00000477440	CYP19A1	P11511	503 aa	Predicted RBP	33.46	■■■□□ 2.95
ARHGEF3-208	ENST00000477440	TAF7	Q15545	349 aa	Predicted RBP	33.46	■■■□□ 2.95
ARHGEF3-208	ENST00000477440	INTS5	Q6P9B9	1019 aa	Known RBP	33.46	■■■□□ 2.95
ARHGEF3-208	ENST00000477440	FMNL2	Q96PY5	1086 aa		33.46	■■■□□ 2.95
ARHGEF3-208	ENST00000477440	CCDC87	Q9NVE4	849 aa		33.44	■■■□□ 2.94
ARHGEF3-208	ENST00000477440	NEUROD2	Q15784	382 aa		33.43	■■■□□ 2.94
ARHGEF3-208	ENST00000477440	MRS2	Q9HD23	443 aa		33.43	■■■□□ 2.94
ARHGEF3-208	ENST00000477440	MIS18A	Q9NYP9	233 aa		33.43	■■■□□ 2.94
ARHGEF3-208	ENST00000477440	POLD1	P28340	1107 aa		33.42	■■■□□ 2.94
ARHGEF3-208	ENST00000477440	TRAPPC3L	Q5T215	181 aa		33.42	■■■□□ 2.94
ARHGEF3-208	ENST00000477440	ARHGEF1	Q92888	912 aa	Known RBP	33.42	■■■□□ 2.94
ARHGEF3-208	ENST00000477440	ADRA2B	P18089	450 aa		33.41	■■■□□ 2.94
ARHGEF3-208	ENST00000477440	ARX	Q96QS3	562 aa		33.41	■■■□□ 2.94

Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms