RNA–Protein interactions for RNA: ENST00000475558.5

SHQ1-207, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 5

Gene SHQ1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-207ENST00000475558 POTEJP0CG39 1038 aa9.31□□□□□ -0.92
SHQ1-207ENST00000475558 POLD1P28340 1107 aa9.31□□□□□ -0.92
SHQ1-207ENST00000475558 MTHFSP49914 203 aa9.31□□□□□ -0.92
SHQ1-207ENST00000475558 SLC27A3Q5K4L6 730 aa9.31□□□□□ -0.92
SHQ1-207ENST00000475558 GGNBP2Q9H3C7 697 aa9.31□□□□□ -0.92
SHQ1-207ENST00000475558 NHSQ6T4R5 1651 aa9.31□□□□□ -0.92
SHQ1-207ENST00000475558 USP31Q70CQ4 1352 aa9.3□□□□□ -0.92
SHQ1-207ENST00000475558 MAP3K13O43283 966 aa9.3□□□□□ -0.92
SHQ1-207ENST00000475558 GIGYF1O75420 1035 aaPredicted RBP9.3□□□□□ -0.92
SHQ1-207ENST00000475558 CNGB1Q14028 1251 aaPredicted RBP9.3□□□□□ -0.92
SHQ1-207ENST00000475558 FAM9BQ8IZU0 186 aa9.3□□□□□ -0.92
SHQ1-207ENST00000475558 PLCD3Q8N3E9 789 aa9.3□□□□□ -0.92
SHQ1-207ENST00000475558 BMP2KQ9NSY1 1161 aaPredicted RBP9.3□□□□□ -0.92
SHQ1-207ENST00000475558 NFAT5O94916 1531 aa9.3□□□□□ -0.92
SHQ1-207ENST00000475558 ERBB3P21860 1342 aa9.3□□□□□ -0.92
SHQ1-207ENST00000475558 KIF24Q5T7B8 1368 aa9.29□□□□□ -0.92
SHQ1-207ENST00000475558 NEFMP07197 916 aa9.29□□□□□ -0.92
SHQ1-207ENST00000475558 ZNF827Q17R98 1081 aa9.29□□□□□ -0.92
SHQ1-207ENST00000475558 RASEFQ8IZ41 740 aa9.29□□□□□ -0.92
SHQ1-207ENST00000475558 LRRC4BQ9NT99 713 aa9.29□□□□□ -0.92
SHQ1-207ENST00000475558 BTAF1O14981 1849 aa9.28□□□□□ -0.92
SHQ1-207ENST00000475558 CD163L1Q9NR16 1453 aa9.28□□□□□ -0.92
SHQ1-207ENST00000475558 PAPPAQ13219 1627 aa9.28□□□□□ -0.92
SHQ1-207ENST00000475558 TIE1P35590 1138 aa9.28□□□□□ -0.92
SHQ1-207ENST00000475558 IFFO2Q5TF58 517 aa9.28□□□□□ -0.92
SHQ1-207ENST00000475558 KLHL34Q8N239 644 aa9.28□□□□□ -0.92
SHQ1-207ENST00000475558 ANKRD24Q8TF21 1146 aa9.28□□□□□ -0.92
SHQ1-207ENST00000475558 GRIN3BO60391 1043 aa9.27□□□□□ -0.93
SHQ1-207ENST00000475558 DIAPH1O60610 1272 aaKnown RBP9.27□□□□□ -0.93
SHQ1-207ENST00000475558 NME9Q86XW9 330 aa9.27□□□□□ -0.93
SHQ1-207ENST00000475558 FAM163AQ96GL9 167 aaPredicted RBP9.27□□□□□ -0.93
SHQ1-207ENST00000475558 TFCP2L1Q9NZI6 479 aa9.27□□□□□ -0.93
SHQ1-207ENST00000475558 POLKQ9UBT6 870 aa9.27□□□□□ -0.93
SHQ1-207ENST00000475558 TRPC6Q9Y210 931 aa9.27□□□□□ -0.93
SHQ1-207ENST00000475558 FCHSD2O94868 740 aa9.26□□□□□ -0.93
SHQ1-207ENST00000475558 SEC24BO95487 1268 aa9.26□□□□□ -0.93
SHQ1-207ENST00000475558 TNNT2P45379 298 aaPredicted RBP9.26□□□□□ -0.93
SHQ1-207ENST00000475558 DDX54Q8TDD1 881 aaKnown RBP9.26□□□□□ -0.93
SHQ1-207ENST00000475558 PCDH10Q9P2E7 1040 aa9.26□□□□□ -0.93
SHQ1-207ENST00000475558 ADAMTS8Q9UP79 889 aa9.26□□□□□ -0.93
SHQ1-207ENST00000475558 PNPLA7Q6ZV29 1317 aa9.26□□□□□ -0.93
SHQ1-207ENST00000475558 QSER1Q2KHR3 1735 aa9.25□□□□□ -0.93
SHQ1-207ENST00000475558 HNRNPUQ00839 825 aaKnown RBP eCLIP9.25□□□□□ -0.93
SHQ1-207ENST00000475558 CCDC184Q52MB2 194 aa9.25□□□□□ -0.93
SHQ1-207ENST00000475558 COL24A1Q17RW2 1714 aa9.25□□□□□ -0.93
SHQ1-207ENST00000475558 MON2Q7Z3U7 1717 aa9.25□□□□□ -0.93
SHQ1-207ENST00000475558 USP54Q70EL1 1684 aa9.24□□□□□ -0.93
SHQ1-207ENST00000475558 HMGB2P26583 209 aaKnown RBP9.24□□□□□ -0.93
SHQ1-207ENST00000475558 AMPHP49418 695 aa9.24□□□□□ -0.93
SHQ1-207ENST00000475558 PRIM1P49642 420 aaKnown RBP9.24□□□□□ -0.93
SHQ1-207ENST00000475558 IP6K1Q92551 441 aa9.24□□□□□ -0.93
SHQ1-207ENST00000475558 SYTL4Q96C24 671 aaPredicted RBP9.24□□□□□ -0.93
SHQ1-207ENST00000475558 RUNDC1Q96C34 613 aa9.24□□□□□ -0.93
SHQ1-207ENST00000475558 YTHDC1Q96MU7 727 aaKnown RBP9.24□□□□□ -0.93
SHQ1-207ENST00000475558 ZBTB47Q9UFB7 747 aaPredicted RBP9.24□□□□□ -0.93
SHQ1-207ENST00000475558 LTN1O94822 1766 aa9.24□□□□□ -0.93
SHQ1-207ENST00000475558 PPM1GO15355 546 aaPredicted RBP9.23□□□□□ -0.93
SHQ1-207ENST00000475558 U2AF1L5P0DN76 240 aaPredicted RBP9.23□□□□□ -0.93
SHQ1-207ENST00000475558 U2AF1Q01081 240 aaKnown RBP eCLIP9.23□□□□□ -0.93
SHQ1-207ENST00000475558 NLGN2Q8NFZ4 835 aa9.23□□□□□ -0.93
SHQ1-207ENST00000475558 ZBED9Q6R2W3 1325 aa9.23□□□□□ -0.93
SHQ1-207ENST00000475558 KCNQ4P56696 695 aa9.22□□□□□ -0.93
SHQ1-207ENST00000475558 ZCRB1Q8TBF4 217 aaKnown RBP9.22□□□□□ -0.93
SHQ1-207ENST00000475558 LTV1Q96GA3 475 aaPredicted RBP9.22□□□□□ -0.93
SHQ1-207ENST00000475558 CCNL1Q9UK58 526 aaPredicted RBP9.22□□□□□ -0.93
SHQ1-207ENST00000475558 POTEFA5A3E0 1075 aa9.21□□□□□ -0.94
SHQ1-207ENST00000475558 TTLL13PA6NNM8 815 aa9.21□□□□□ -0.94
SHQ1-207ENST00000475558 YBX3P16989 372 aaKnown RBP eCLIP9.21□□□□□ -0.94
SHQ1-207ENST00000475558 COL23A1Q86Y22 540 aaPredicted RBP9.21□□□□□ -0.94
SHQ1-207ENST00000475558 PCDHB13Q9Y5F0 798 aa9.21□□□□□ -0.94
SHQ1-207ENST00000475558 SHANK3Q9BYB0 1731 aa9.21□□□□□ -0.94
SHQ1-207ENST00000475558 GOLGB1Q14789 3259 aaKnown RBP9.21□□□□□ -0.94
SHQ1-207ENST00000475558 FAM208AQ9UK61 1670 aaKnown RBP9.2□□□□□ -0.94
SHQ1-207ENST00000475558 TUBGCP6Q96RT7 1819 aa9.2□□□□□ -0.94
SHQ1-207ENST00000475558 U2SURPO15042 1029 aaKnown RBP9.2□□□□□ -0.94
SHQ1-207ENST00000475558 IL13P35225 146 aa9.2□□□□□ -0.94
SHQ1-207ENST00000475558 CALD1Q05682 793 aaKnown RBP9.2□□□□□ -0.94
SHQ1-207ENST00000475558 CCDC27Q2M243 656 aa9.2□□□□□ -0.94
SHQ1-207ENST00000475558 FLAD1Q8NFF5 587 aa9.2□□□□□ -0.94
SHQ1-207ENST00000475558 CD2APQ9Y5K6 639 aa9.2□□□□□ -0.94
SHQ1-207ENST00000475558 CEP350Q5VT06 3117 aa9.2□□□□□ -0.94
SHQ1-207ENST00000475558 LY75O60449 1722 aa9.19□□□□□ -0.94
SHQ1-207ENST00000475558 LMOD3Q0VAK6 560 aa9.19□□□□□ -0.94
SHQ1-207ENST00000475558 GPBP1L1Q9HC44 474 aaPredicted RBP9.19□□□□□ -0.94
SHQ1-207ENST00000475558 MAPK8IP3Q9UPT6 1336 aa9.19□□□□□ -0.94
SHQ1-207ENST00000475558 FLT4P35916 1363 aa9.19□□□□□ -0.94
SHQ1-207ENST00000475558 RTL1A6NKG5 1358 aa9.18□□□□□ -0.94
SHQ1-207ENST00000475558 HOXC9P31274 260 aa9.18□□□□□ -0.94
SHQ1-207ENST00000475558 RRS1Q15050 365 aaKnown RBP9.18□□□□□ -0.94
SHQ1-207ENST00000475558 MAP3K19Q56UN5 1328 aa9.18□□□□□ -0.94
SHQ1-207ENST00000475558 WDR63Q8IWG1 891 aa9.18□□□□□ -0.94
SHQ1-207ENST00000475558 ATP10DQ9P241 1426 aa9.18□□□□□ -0.94
SHQ1-207ENST00000475558 TRIM35Q9UPQ4 493 aa9.18□□□□□ -0.94
SHQ1-207ENST00000475558 EMILIN1Q9Y6C2 1016 aa9.18□□□□□ -0.94
SHQ1-207ENST00000475558 DOT1LQ8TEK3 1739 aa9.17□□□□□ -0.94
SHQ1-207ENST00000475558 SMG6Q86US8 1419 aaKnown RBP9.17□□□□□ -0.94
SHQ1-207ENST00000475558 HSPA6P17066 643 aa9.17□□□□□ -0.94
SHQ1-207ENST00000475558 MSL1Q68DK7 614 aa9.17□□□□□ -0.94
SHQ1-207ENST00000475558 RAPGEF4Q8WZA2 1011 aa9.17□□□□□ -0.94
SHQ1-207ENST00000475558 COLQQ9Y215 455 aaPredicted RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms