RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 CASZ1Q86V15 1759 aa15.49■□□□□ 0.07
HLA-DOB-208ENST00000475235 ERVV-2B6SEH9 535 aa15.48■□□□□ 0.07
HLA-DOB-208ENST00000475235 KCNQ4P56696 695 aa15.48■□□□□ 0.07
HLA-DOB-208ENST00000475235 CNGB1Q14028 1251 aaPredicted RBP15.48■□□□□ 0.07
HLA-DOB-208ENST00000475235 C1orf141Q5JVX7 400 aa15.48■□□□□ 0.07
HLA-DOB-208ENST00000475235 MYCNP04198 464 aaPredicted RBP15.48■□□□□ 0.07
HLA-DOB-208ENST00000475235 SLC16A10Q8TF71 515 aa15.48■□□□□ 0.07
HLA-DOB-208ENST00000475235 LY75O60449 1722 aa15.47■□□□□ 0.07
HLA-DOB-208ENST00000475235 PKNOX2Q96KN3 472 aa15.47■□□□□ 0.07
HLA-DOB-208ENST00000475235 TOGARAM1Q9Y4F4 1720 aa15.46■□□□□ 0.07
HLA-DOB-208ENST00000475235 CFAP53Q96M91 514 aa15.46■□□□□ 0.07
HLA-DOB-208ENST00000475235 ATF5Q9Y2D1 282 aaPredicted RBP15.46■□□□□ 0.07
HLA-DOB-208ENST00000475235 PNPLA7Q6ZV29 1317 aa15.45■□□□□ 0.06
HLA-DOB-208ENST00000475235 PDIA4P13667 645 aaKnown RBP15.45■□□□□ 0.06
HLA-DOB-208ENST00000475235 PTGER2P43116 358 aa15.45■□□□□ 0.06
HLA-DOB-208ENST00000475235 LOC102724428A0A0B4J2F2 783 aa15.44■□□□□ 0.06
HLA-DOB-208ENST00000475235 HMOX1P09601 288 aa15.44■□□□□ 0.06
HLA-DOB-208ENST00000475235 SIK1P57059 783 aa15.44■□□□□ 0.06
HLA-DOB-208ENST00000475235 CABP4P57796 275 aa15.43■□□□□ 0.06
HLA-DOB-208ENST00000475235 AKAP4Q5JQC9 854 aa15.43■□□□□ 0.06
HLA-DOB-208ENST00000475235 FLAD1Q8NFF5 587 aa15.43■□□□□ 0.06
HLA-DOB-208ENST00000475235 ASAP1Q9ULH1 1129 aa15.43■□□□□ 0.06
HLA-DOB-208ENST00000475235 KDM6AO15550 1401 aaPredicted RBP15.43■□□□□ 0.06
HLA-DOB-208ENST00000475235 COL3A1P02461 1466 aaPredicted RBP15.43■□□□□ 0.06
HLA-DOB-208ENST00000475235 KAT6BQ8WYB5 2073 aa15.43■□□□□ 0.06
HLA-DOB-208ENST00000475235 U2SURPO15042 1029 aaKnown RBP15.43■□□□□ 0.06
HLA-DOB-208ENST00000475235 SGIP1Q9BQI5 828 aa15.43■□□□□ 0.06
HLA-DOB-208ENST00000475235 ATG3Q9NT62 314 aa15.43■□□□□ 0.06
HLA-DOB-208ENST00000475235 AK7Q96M32 723 aa15.42■□□□□ 0.06
HLA-DOB-208ENST00000475235 POLD1P28340 1107 aa15.41■□□□□ 0.06
HLA-DOB-208ENST00000475235 PPP2R1AP30153 589 aa15.41■□□□□ 0.06
HLA-DOB-208ENST00000475235 ATP6V1AP38606 617 aa15.41■□□□□ 0.06
HLA-DOB-208ENST00000475235 NUDCQ9Y266 331 aa15.41■□□□□ 0.06
HLA-DOB-208ENST00000475235 QSER1Q2KHR3 1735 aa15.39■□□□□ 0.05
HLA-DOB-208ENST00000475235 COL23A1Q86Y22 540 aaPredicted RBP15.39■□□□□ 0.05
HLA-DOB-208ENST00000475235 ITGB4P16144 1822 aa15.39■□□□□ 0.05
HLA-DOB-208ENST00000475235 MTHFSDQ2M296 383 aaKnown RBP15.38■□□□□ 0.05
HLA-DOB-208ENST00000475235 NFATC2IPQ8NCF5 419 aa15.38■□□□□ 0.05
HLA-DOB-208ENST00000475235 C5P01031 1676 aa15.38■□□□□ 0.05
HLA-DOB-208ENST00000475235 SSFA2P28290 1259 aa15.38■□□□□ 0.05
HLA-DOB-208ENST00000475235 LINC00116Q8NCU8 138 aa15.38■□□□□ 0.05
HLA-DOB-208ENST00000475235 GAS2L2Q8NHY3 880 aa15.38■□□□□ 0.05
HLA-DOB-208ENST00000475235 RBM42Q9BTD8 480 aaKnown RBP15.38■□□□□ 0.05
HLA-DOB-208ENST00000475235 ITPK1Q13572 414 aa15.37■□□□□ 0.05
HLA-DOB-208ENST00000475235 FHDC1Q9C0D6 1143 aaPredicted RBP15.37■□□□□ 0.05
HLA-DOB-208ENST00000475235 SLC52A2Q9HAB3 445 aa15.37■□□□□ 0.05
HLA-DOB-208ENST00000475235 C4BP0C0L5 1744 aa15.36■□□□□ 0.05
HLA-DOB-208ENST00000475235 RNMTO43148 476 aaKnown RBP15.36■□□□□ 0.05
HLA-DOB-208ENST00000475235 CACNB1Q02641 598 aaPredicted RBP15.36■□□□□ 0.05
HLA-DOB-208ENST00000475235 SYT17Q9BSW7 474 aa15.36■□□□□ 0.05
HLA-DOB-208ENST00000475235 MAP3K5Q99683 1374 aa15.36■□□□□ 0.05
HLA-DOB-208ENST00000475235 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.35■□□□□ 0.05
HLA-DOB-208ENST00000475235 LGR6Q9HBX8 967 aa15.35■□□□□ 0.05
HLA-DOB-208ENST00000475235 GNPATO15228 680 aa15.34■□□□□ 0.05
HLA-DOB-208ENST00000475235 U2AF1L5P0DN76 240 aaPredicted RBP15.34■□□□□ 0.05
HLA-DOB-208ENST00000475235 U2AF1Q01081 240 aaKnown RBP eCLIP15.34■□□□□ 0.05
HLA-DOB-208ENST00000475235 MRC1P22897 1456 aa15.34■□□□□ 0.05
HLA-DOB-208ENST00000475235 CNTNAP4Q9C0A0 1308 aa15.33■□□□□ 0.05
HLA-DOB-208ENST00000475235 PTCD1O75127 700 aaKnown RBP15.33■□□□□ 0.05
HLA-DOB-208ENST00000475235 PHF14O94880 888 aa15.33■□□□□ 0.05
HLA-DOB-208ENST00000475235 PRKAR2BP31323 418 aa15.33■□□□□ 0.05
HLA-DOB-208ENST00000475235 RC3H1Q5TC82 1133 aaKnown RBP15.33■□□□□ 0.05
HLA-DOB-208ENST00000475235 SLC4A9Q96Q91 983 aa15.33■□□□□ 0.05
HLA-DOB-208ENST00000475235 RSPH6AQ9H0K4 717 aa15.33■□□□□ 0.05
HLA-DOB-208ENST00000475235 GNAT3A8MTJ3 354 aa15.33■□□□□ 0.04
HLA-DOB-208ENST00000475235 FCHSD2O94868 740 aa15.33■□□□□ 0.04
HLA-DOB-208ENST00000475235 ZEB1P37275 1124 aaPredicted RBP15.33■□□□□ 0.04
HLA-DOB-208ENST00000475235 ERICH6BQ5W0A0 696 aa15.33■□□□□ 0.04
HLA-DOB-208ENST00000475235 SAMD1Q6SPF0 538 aaPredicted RBP15.33■□□□□ 0.04
HLA-DOB-208ENST00000475235 RTCBQ9Y3I0 505 aaKnown RBP15.33■□□□□ 0.04
HLA-DOB-208ENST00000475235 ZNF831Q5JPB2 1677 aa15.32■□□□□ 0.04
HLA-DOB-208ENST00000475235 RALBP1Q15311 655 aa15.32■□□□□ 0.04
HLA-DOB-208ENST00000475235 TAOK2Q9UL54 1235 aa15.32■□□□□ 0.04
HLA-DOB-208ENST00000475235 TUBGCP6Q96RT7 1819 aa15.32■□□□□ 0.04
HLA-DOB-208ENST00000475235 TAF1LQ8IZX4 1826 aa15.31■□□□□ 0.04
HLA-DOB-208ENST00000475235 TRAPPC3LQ5T215 181 aa15.31■□□□□ 0.04
HLA-DOB-208ENST00000475235 MSL1Q68DK7 614 aa15.31■□□□□ 0.04
HLA-DOB-208ENST00000475235 AMIGO3Q86WK7 504 aa15.31■□□□□ 0.04
HLA-DOB-208ENST00000475235 FBXO3Q9UK99 471 aa15.31■□□□□ 0.04
HLA-DOB-208ENST00000475235 TEFQ10587 303 aa15.3■□□□□ 0.04
HLA-DOB-208ENST00000475235 DDX10Q13206 875 aaKnown RBP15.3■□□□□ 0.04
HLA-DOB-208ENST00000475235 COL24A1Q17RW2 1714 aa15.29■□□□□ 0.04
HLA-DOB-208ENST00000475235 RPS6KA4O75676 772 aa15.29■□□□□ 0.04
HLA-DOB-208ENST00000475235 PHACTR3Q96KR7 559 aa15.29■□□□□ 0.04
HLA-DOB-208ENST00000475235 ADAMTS7Q9UKP4 1686 aa15.29■□□□□ 0.04
HLA-DOB-208ENST00000475235 SCN11AQ9UI33 1791 aa15.28■□□□□ 0.04
HLA-DOB-208ENST00000475235 NEFMP07197 916 aa15.28■□□□□ 0.04
HLA-DOB-208ENST00000475235 NPM2Q86SE8 214 aaKnown RBP15.28■□□□□ 0.04
HLA-DOB-208ENST00000475235 TTC5Q8N0Z6 440 aa15.28■□□□□ 0.04
HLA-DOB-208ENST00000475235 PDE4CQ08493 712 aa15.27■□□□□ 0.04
HLA-DOB-208ENST00000475235 SLC39A6Q13433 755 aa15.27■□□□□ 0.04
HLA-DOB-208ENST00000475235 SMIM5Q71RC9 77 aa15.27■□□□□ 0.04
HLA-DOB-208ENST00000475235 VSIG10Q8N0Z9 540 aa15.27■□□□□ 0.04
HLA-DOB-208ENST00000475235 IL17REQ8NFR9 667 aa15.27■□□□□ 0.04
HLA-DOB-208ENST00000475235 CRKLP46109 303 aaKnown RBP15.27■□□□□ 0.03
HLA-DOB-208ENST00000475235 RTF1Q92541 710 aaKnown RBP15.27■□□□□ 0.03
HLA-DOB-208ENST00000475235 PNNQ9H307 717 aaKnown RBP15.27■□□□□ 0.03
HLA-DOB-208ENST00000475235 CEMIPQ8WUJ3 1361 aa15.26■□□□□ 0.03
HLA-DOB-208ENST00000475235 UBR3Q6ZT12 1888 aa15.26■□□□□ 0.03
HLA-DOB-208ENST00000475235 RFC4P35249 363 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms