RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 MSH5O43196 834 aa9.38□□□□□ -0.91
LIMD1-204ENST00000474665 ANP32CO43423 234 aa9.38□□□□□ -0.91
LIMD1-204ENST00000474665 HMOX1P09601 288 aa9.38□□□□□ -0.91
LIMD1-204ENST00000474665 DIEXFQ68CQ4 756 aaKnown RBP9.38□□□□□ -0.91
LIMD1-204ENST00000474665 CFAP53Q96M91 514 aa9.38□□□□□ -0.91
LIMD1-204ENST00000474665 CD2APQ9Y5K6 639 aa9.38□□□□□ -0.91
LIMD1-204ENST00000474665 EXOC5O00471 708 aa9.37□□□□□ -0.91
LIMD1-204ENST00000474665 CYP27B1O15528 508 aa9.37□□□□□ -0.91
LIMD1-204ENST00000474665 C16orf71Q8IYS4 520 aaPredicted RBP9.37□□□□□ -0.91
LIMD1-204ENST00000474665 PHACTR3Q96KR7 559 aa9.37□□□□□ -0.91
LIMD1-204ENST00000474665 CDCA7Q9BWT1 371 aaPredicted RBP9.37□□□□□ -0.91
LIMD1-204ENST00000474665 RSPH6AQ9H0K4 717 aa9.37□□□□□ -0.91
LIMD1-204ENST00000474665 U2SURPO15042 1029 aaKnown RBP9.36□□□□□ -0.91
LIMD1-204ENST00000474665 FSTL1Q12841 308 aa9.36□□□□□ -0.91
LIMD1-204ENST00000474665 U2AF1L5P0DN76 240 aaPredicted RBP9.35□□□□□ -0.91
LIMD1-204ENST00000474665 TATP17735 454 aaPredicted RBP9.35□□□□□ -0.91
LIMD1-204ENST00000474665 U2AF1Q01081 240 aaKnown RBP eCLIP9.35□□□□□ -0.91
LIMD1-204ENST00000474665 COL23A1Q86Y22 540 aaPredicted RBP9.35□□□□□ -0.91
LIMD1-204ENST00000474665 MIER1Q8N108 512 aa9.35□□□□□ -0.91
LIMD1-204ENST00000474665 ZCRB1Q8TBF4 217 aaKnown RBP9.35□□□□□ -0.91
LIMD1-204ENST00000474665 PNISRQ8TF01 805 aaKnown RBP9.35□□□□□ -0.91
LIMD1-204ENST00000474665 RAPGEF4Q8WZA2 1011 aa9.35□□□□□ -0.91
LIMD1-204ENST00000474665 PLEKHF1Q96S99 279 aa9.35□□□□□ -0.91
LIMD1-204ENST00000474665 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.35□□□□□ -0.91
LIMD1-204ENST00000474665 ADAMTS8Q9UP79 889 aa9.35□□□□□ -0.91
LIMD1-204ENST00000474665 FCHSD2O94868 740 aa9.34□□□□□ -0.91
LIMD1-204ENST00000474665 PRKAR2BP31323 418 aa9.34□□□□□ -0.91
LIMD1-204ENST00000474665 MLLT1Q03111 559 aaPredicted RBP9.34□□□□□ -0.91
LIMD1-204ENST00000474665 NUDCQ9Y266 331 aa9.34□□□□□ -0.91
LIMD1-204ENST00000474665 PLEKHG2Q9H7P9 1386 aa9.34□□□□□ -0.91
LIMD1-204ENST00000474665 TOGARAM1Q9Y4F4 1720 aa9.34□□□□□ -0.92
LIMD1-204ENST00000474665 VIRMAQ69YN4 1812 aaKnown RBP9.33□□□□□ -0.92
LIMD1-204ENST00000474665 DLG5Q8TDM6 1919 aa9.33□□□□□ -0.92
LIMD1-204ENST00000474665 MTHFSDQ2M296 383 aaKnown RBP9.33□□□□□ -0.92
LIMD1-204ENST00000474665 DDX54Q8TDD1 881 aaKnown RBP9.33□□□□□ -0.92
LIMD1-204ENST00000474665 MRS2Q9HD23 443 aa9.33□□□□□ -0.92
LIMD1-204ENST00000474665 NHSQ6T4R5 1651 aa9.32□□□□□ -0.92
LIMD1-204ENST00000474665 FOXN1O15353 648 aa9.32□□□□□ -0.92
LIMD1-204ENST00000474665 PHKG2P15735 406 aa9.32□□□□□ -0.92
LIMD1-204ENST00000474665 NKX1-1Q15270 411 aaPredicted RBP9.32□□□□□ -0.92
LIMD1-204ENST00000474665 SLC27A3Q5K4L6 730 aa9.32□□□□□ -0.92
LIMD1-204ENST00000474665 KDM6AO15550 1401 aaPredicted RBP9.31□□□□□ -0.92
LIMD1-204ENST00000474665 QSER1Q2KHR3 1735 aa9.31□□□□□ -0.92
LIMD1-204ENST00000474665 ITGB4P16144 1822 aa9.31□□□□□ -0.92
LIMD1-204ENST00000474665 TUBGCP6Q96RT7 1819 aa9.31□□□□□ -0.92
LIMD1-204ENST00000474665 PLEKHO1Q53GL0 409 aaPredicted RBP9.31□□□□□ -0.92
LIMD1-204ENST00000474665 ZNF530Q6P9A1 599 aaPredicted RBP9.31□□□□□ -0.92
LIMD1-204ENST00000474665 ABHD8Q96I13 439 aa9.31□□□□□ -0.92
LIMD1-204ENST00000474665 RRAGCQ9HB90 399 aa9.31□□□□□ -0.92
LIMD1-204ENST00000474665 SPG7Q9UQ90 795 aa9.31□□□□□ -0.92
LIMD1-204ENST00000474665 ADAMTS7Q9UKP4 1686 aa9.31□□□□□ -0.92
LIMD1-204ENST00000474665 SCN11AQ9UI33 1791 aa9.31□□□□□ -0.92
LIMD1-204ENST00000474665 DOT1LQ8TEK3 1739 aa9.31□□□□□ -0.92
LIMD1-204ENST00000474665 PCDH11XQ9BZA7 1347 aa9.31□□□□□ -0.92
LIMD1-204ENST00000474665 PCDH11YQ9BZA8 1340 aa9.31□□□□□ -0.92
LIMD1-204ENST00000474665 AMOTQ4VCS5 1084 aa9.3□□□□□ -0.92
LIMD1-204ENST00000474665 CCDC146Q8IYE0 955 aa9.3□□□□□ -0.92
LIMD1-204ENST00000474665 BTAF1O14981 1849 aa9.3□□□□□ -0.92
LIMD1-204ENST00000474665 CCER2I3L3R5 266 aa9.29□□□□□ -0.92
LIMD1-204ENST00000474665 IFNL2Q8IZJ0 200 aa9.29□□□□□ -0.92
LIMD1-204ENST00000474665 SMC1BQ8NDV3 1235 aa9.29□□□□□ -0.92
LIMD1-204ENST00000474665 LGR6Q9HBX8 967 aa9.29□□□□□ -0.92
LIMD1-204ENST00000474665 PRDM10Q9NQV6 1147 aa9.29□□□□□ -0.92
LIMD1-204ENST00000474665 PRIM1P49642 420 aaKnown RBP9.28□□□□□ -0.92
LIMD1-204ENST00000474665 WDR43Q15061 677 aaKnown RBP eCLIP9.28□□□□□ -0.92
LIMD1-204ENST00000474665 MPRIPQ6WCQ1 1025 aa9.28□□□□□ -0.92
LIMD1-204ENST00000474665 ARHGAP27Q6ZUM4 889 aa9.28□□□□□ -0.92
LIMD1-204ENST00000474665 IL17REQ8NFR9 667 aa9.28□□□□□ -0.92
LIMD1-204ENST00000474665 SIPA1L3O60292 1781 aaPredicted RBP9.27□□□□□ -0.92
LIMD1-204ENST00000474665 CCDC85CA6NKD9 419 aa9.27□□□□□ -0.93
LIMD1-204ENST00000474665 RNMTO43148 476 aaKnown RBP9.27□□□□□ -0.93
LIMD1-204ENST00000474665 RGS19P49795 217 aa9.27□□□□□ -0.93
LIMD1-204ENST00000474665 AKAP4Q5JQC9 854 aa9.27□□□□□ -0.93
LIMD1-204ENST00000474665 RUNDC1Q96C34 613 aa9.27□□□□□ -0.93
LIMD1-204ENST00000474665 KCPQ6ZWJ8 1503 aa9.26□□□□□ -0.93
LIMD1-204ENST00000474665 CEMIPQ8WUJ3 1361 aa9.26□□□□□ -0.93
LIMD1-204ENST00000474665 APAF1O14727 1248 aa9.26□□□□□ -0.93
LIMD1-204ENST00000474665 TMPOP42166 694 aaKnown RBP9.26□□□□□ -0.93
LIMD1-204ENST00000474665 DCTN1Q14203 1278 aa9.26□□□□□ -0.93
LIMD1-204ENST00000474665 NFE2L2Q16236 605 aa9.26□□□□□ -0.93
LIMD1-204ENST00000474665 C9orf131Q5VYM1 1079 aa9.26□□□□□ -0.93
LIMD1-204ENST00000474665 SMIM5Q71RC9 77 aa9.26□□□□□ -0.93
LIMD1-204ENST00000474665 GAS2L2Q8NHY3 880 aa9.26□□□□□ -0.93
LIMD1-204ENST00000474665 PIGBQ92521 554 aa9.26□□□□□ -0.93
LIMD1-204ENST00000474665 DCAF5Q96JK2 942 aa9.26□□□□□ -0.93
LIMD1-204ENST00000474665 MKRN1Q9UHC7 482 aaKnown RBP9.26□□□□□ -0.93
LIMD1-204ENST00000474665 TRIM35Q9UPQ4 493 aa9.26□□□□□ -0.93
LIMD1-204ENST00000474665 RRP7AQ9Y3A4 280 aaKnown RBP9.26□□□□□ -0.93
LIMD1-204ENST00000474665 MRC1P22897 1456 aa9.26□□□□□ -0.93
LIMD1-204ENST00000474665 CICQ96RK0 1608 aaPredicted RBP9.25□□□□□ -0.93
LIMD1-204ENST00000474665 GNAT3A8MTJ3 354 aa9.25□□□□□ -0.93
LIMD1-204ENST00000474665 ERVV-2B6SEH9 535 aa9.25□□□□□ -0.93
LIMD1-204ENST00000474665 LBX1P52954 281 aa9.25□□□□□ -0.93
LIMD1-204ENST00000474665 C1orf141Q5JVX7 400 aa9.25□□□□□ -0.93
LIMD1-204ENST00000474665 MCM10Q7L590 875 aa9.25□□□□□ -0.93
LIMD1-204ENST00000474665 FAM9BQ8IZU0 186 aa9.25□□□□□ -0.93
LIMD1-204ENST00000474665 THUMPD2Q9BTF0 503 aaKnown RBP9.25□□□□□ -0.93
LIMD1-204ENST00000474665 BCS1LQ9Y276 419 aa9.25□□□□□ -0.93
LIMD1-204ENST00000474665 HSP90AB1P08238 724 aaKnown RBP9.24□□□□□ -0.93
LIMD1-204ENST00000474665 CTCFP49711 727 aaPredicted RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms