RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 ABCA3Q99758 1704 aa15.4■□□□□ 0.06
SYNE1-222ENST00000474655 RNMTO43148 476 aaKnown RBP15.39■□□□□ 0.05
SYNE1-222ENST00000474655 EIF4A1P60842 406 aaKnown RBP15.39■□□□□ 0.05
SYNE1-222ENST00000474655 C1orf141Q5JVX7 400 aa15.39■□□□□ 0.05
SYNE1-222ENST00000474655 CHMP4AQ9BY43 222 aa15.39■□□□□ 0.05
SYNE1-222ENST00000474655 ATP10DQ9P241 1426 aa15.39■□□□□ 0.05
SYNE1-222ENST00000474655 PXDNLA1KZ92 1463 aa15.39■□□□□ 0.05
SYNE1-222ENST00000474655 HEG1Q9ULI3 1381 aa15.38■□□□□ 0.05
SYNE1-222ENST00000474655 CCT4P50991 539 aaKnown RBP15.38■□□□□ 0.05
SYNE1-222ENST00000474655 TEFQ10587 303 aa15.38■□□□□ 0.05
SYNE1-222ENST00000474655 CABLES1Q8TDN4 633 aa15.38■□□□□ 0.05
SYNE1-222ENST00000474655 PLEKHG5O94827 1062 aa15.37■□□□□ 0.05
SYNE1-222ENST00000474655 FLIIQ13045 1269 aa15.37■□□□□ 0.05
SYNE1-222ENST00000474655 MPRIPQ6WCQ1 1025 aa15.37■□□□□ 0.05
SYNE1-222ENST00000474655 CHD1LQ86WJ1 897 aa15.37■□□□□ 0.05
SYNE1-222ENST00000474655 RPAP2Q8IXW5 612 aaPredicted RBP15.37■□□□□ 0.05
SYNE1-222ENST00000474655 C1orf115Q9H7X2 142 aa15.37■□□□□ 0.05
SYNE1-222ENST00000474655 ANKRD44Q8N8A2 993 aa15.36■□□□□ 0.05
SYNE1-222ENST00000474655 NOP58Q9Y2X3 529 aaKnown RBP15.36■□□□□ 0.05
SYNE1-222ENST00000474655 NPM2Q86SE8 214 aaKnown RBP15.36■□□□□ 0.05
SYNE1-222ENST00000474655 RAPGEF4Q8WZA2 1011 aa15.36■□□□□ 0.05
SYNE1-222ENST00000474655 MEGF6O75095 1541 aa15.36■□□□□ 0.05
SYNE1-222ENST00000474655 BTBD11A6QL63 1104 aa15.35■□□□□ 0.05
SYNE1-222ENST00000474655 NLRP2Q9NX02 1062 aa15.35■□□□□ 0.05
SYNE1-222ENST00000474655 HDGFL1Q5TGJ6 251 aa15.34■□□□□ 0.05
SYNE1-222ENST00000474655 ANP32EQ9BTT0 268 aa15.34■□□□□ 0.05
SYNE1-222ENST00000474655 DCTPP1Q9H773 170 aa15.34■□□□□ 0.05
SYNE1-222ENST00000474655 PARP4Q9UKK3 1724 aaKnown RBP15.34■□□□□ 0.05
SYNE1-222ENST00000474655 TATP17735 454 aaPredicted RBP15.34■□□□□ 0.05
SYNE1-222ENST00000474655 CEP85Q6P2H3 762 aa15.34■□□□□ 0.05
SYNE1-222ENST00000474655 DDRGK1Q96HY6 314 aa15.34■□□□□ 0.05
SYNE1-222ENST00000474655 MEIS3Q99687 375 aa15.34■□□□□ 0.05
SYNE1-222ENST00000474655 ZBTB47Q9UFB7 747 aaPredicted RBP15.34■□□□□ 0.05
SYNE1-222ENST00000474655 MRC1P22897 1456 aa15.33■□□□□ 0.04
SYNE1-222ENST00000474655 F6X3S4 739 aa15.33■□□□□ 0.04
SYNE1-222ENST00000474655 SPG7Q9UQ90 795 aa15.33■□□□□ 0.04
SYNE1-222ENST00000474655 KDM6AO15550 1401 aaPredicted RBP15.33■□□□□ 0.04
SYNE1-222ENST00000474655 KCNQ3O43525 872 aa15.32■□□□□ 0.04
SYNE1-222ENST00000474655 FKBP5Q13451 457 aaPredicted RBP15.32■□□□□ 0.04
SYNE1-222ENST00000474655 CHRNA2Q15822 529 aa15.32■□□□□ 0.04
SYNE1-222ENST00000474655 SEC24BO95487 1268 aa15.31■□□□□ 0.04
SYNE1-222ENST00000474655 PHKG2P15735 406 aa15.31■□□□□ 0.04
SYNE1-222ENST00000474655 LNPKQ9C0E8 428 aa15.31■□□□□ 0.04
SYNE1-222ENST00000474655 GIGYF1O75420 1035 aaPredicted RBP15.31■□□□□ 0.04
SYNE1-222ENST00000474655 ANKRD45Q5TZF3 282 aa15.31■□□□□ 0.04
SYNE1-222ENST00000474655 CSB-PGBD3P0DP91 1061 aa15.3■□□□□ 0.04
SYNE1-222ENST00000474655 SLC4A10Q6U841 1118 aa15.3■□□□□ 0.04
SYNE1-222ENST00000474655 IFNL2Q8IZJ0 200 aa15.3■□□□□ 0.04
SYNE1-222ENST00000474655 COL5A2P05997 1499 aaPredicted RBP15.3■□□□□ 0.04
SYNE1-222ENST00000474655 WDR17Q8IZU2 1322 aa15.3■□□□□ 0.04
SYNE1-222ENST00000474655 NECTIN2Q92692 538 aa15.29■□□□□ 0.04
SYNE1-222ENST00000474655 SLC52A2Q9HAB3 445 aa15.29■□□□□ 0.04
SYNE1-222ENST00000474655 GNAI3P08754 354 aa15.29■□□□□ 0.04
SYNE1-222ENST00000474655 BMP2KLQ5H9B9 411 aa15.29■□□□□ 0.04
SYNE1-222ENST00000474655 ERICH6Q7L0X2 663 aa15.29■□□□□ 0.04
SYNE1-222ENST00000474655 PHAXQ9H814 394 aaKnown RBP15.29■□□□□ 0.04
SYNE1-222ENST00000474655 GNAI2P04899 355 aa15.28■□□□□ 0.04
SYNE1-222ENST00000474655 DCAF5Q96JK2 942 aa15.28■□□□□ 0.04
SYNE1-222ENST00000474655 PRDM11Q9NQV5 511 aa15.28■□□□□ 0.04
SYNE1-222ENST00000474655 CHPF2Q9P2E5 772 aa15.28■□□□□ 0.04
SYNE1-222ENST00000474655 DBF4Q9UBU7 674 aaPredicted RBP15.28■□□□□ 0.04
SYNE1-222ENST00000474655 C5P01031 1676 aa15.27■□□□□ 0.04
SYNE1-222ENST00000474655 CYP27B1O15528 508 aa15.27■□□□□ 0.04
SYNE1-222ENST00000474655 HMMRO75330 724 aa15.27■□□□□ 0.04
SYNE1-222ENST00000474655 HSP90AB1P08238 724 aaKnown RBP15.26■□□□□ 0.03
SYNE1-222ENST00000474655 EIF2S2P20042 333 aaKnown RBP15.26■□□□□ 0.03
SYNE1-222ENST00000474655 ZNF790Q6PG37 636 aa15.26■□□□□ 0.03
SYNE1-222ENST00000474655 SHANK3Q9BYB0 1731 aa15.26■□□□□ 0.03
SYNE1-222ENST00000474655 USP44Q9H0E7 712 aa15.26■□□□□ 0.03
SYNE1-222ENST00000474655 TBC1D32Q96NH3 1257 aa15.25■□□□□ 0.03
SYNE1-222ENST00000474655 UPF2Q9HAU5 1272 aaKnown RBP15.24■□□□□ 0.03
SYNE1-222ENST00000474655 ADCY9O60503 1353 aa15.24■□□□□ 0.03
SYNE1-222ENST00000474655 AHDC1Q5TGY3 1603 aaPredicted RBP15.24■□□□□ 0.03
SYNE1-222ENST00000474655 ATP8B2P98198 1209 aa15.24■□□□□ 0.03
SYNE1-222ENST00000474655 BEND3Q5T5X7 828 aa15.24■□□□□ 0.03
SYNE1-222ENST00000474655 PLEKHM2Q8IWE5 1019 aa15.24■□□□□ 0.03
SYNE1-222ENST00000474655 NFATC2IPQ8NCF5 419 aa15.24■□□□□ 0.03
SYNE1-222ENST00000474655 DNAAF4Q8WXU2 420 aa15.24■□□□□ 0.03
SYNE1-222ENST00000474655 CARD10Q9BWT7 1032 aa15.24■□□□□ 0.03
SYNE1-222ENST00000474655 COL22A1Q8NFW1 1626 aaPredicted RBP15.23■□□□□ 0.03
SYNE1-222ENST00000474655 GLI3P10071 1580 aa15.23■□□□□ 0.03
SYNE1-222ENST00000474655 SRCIN1Q9C0H9 1055 aa15.23■□□□□ 0.03
SYNE1-222ENST00000474655 HYPKQ9NX55 129 aa15.23■□□□□ 0.03
SYNE1-222ENST00000474655 ROBO1Q9Y6N7 1651 aa15.23■□□□□ 0.03
SYNE1-222ENST00000474655 IBTKQ9P2D0 1353 aaPredicted RBP15.23■□□□□ 0.03
SYNE1-222ENST00000474655 LAMB4A4D0S4 1761 aa15.22■□□□□ 0.03
SYNE1-222ENST00000474655 UBR2Q8IWV8 1755 aa15.22■□□□□ 0.03
SYNE1-222ENST00000474655 PI4KAP2A4QPH2 592 aa15.22■□□□□ 0.03
SYNE1-222ENST00000474655 PI4KAP1Q8N8J0 262 aa15.22■□□□□ 0.03
SYNE1-222ENST00000474655 DDX21Q9NR30 783 aaKnown RBP eCLIP15.22■□□□□ 0.03
SYNE1-222ENST00000474655 LTBP4Q8N2S1 1624 aa15.22■□□□□ 0.03
SYNE1-222ENST00000474655 TOM1L2Q6ZVM7 507 aa15.21■□□□□ 0.03
SYNE1-222ENST00000474655 PCDH11XQ9BZA7 1347 aa15.21■□□□□ 0.03
SYNE1-222ENST00000474655 PCDH11YQ9BZA8 1340 aa15.21■□□□□ 0.03
SYNE1-222ENST00000474655 PAPPAQ13219 1627 aa15.21■□□□□ 0.03
SYNE1-222ENST00000474655 PRAMEF22A3QJZ6 481 aa15.21■□□□□ 0.02
SYNE1-222ENST00000474655 UBTFL1P0CB47 393 aaPredicted RBP15.21■□□□□ 0.02
SYNE1-222ENST00000474655 PDIA6Q15084 440 aa15.21■□□□□ 0.02
SYNE1-222ENST00000474655 NKX1-1Q15270 411 aaPredicted RBP15.21■□□□□ 0.02
SYNE1-222ENST00000474655 COL14A1Q05707 1796 aaKnown RBP15.21■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms