RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-206ENST00000474215 ITPK1Q13572 414 aa15.02■□□□□ -0
CKS1B-206ENST00000474215 LINC00116Q8NCU8 138 aa15.02■□□□□ -0
CKS1B-206ENST00000474215 RBM42Q9BTD8 480 aaKnown RBP15.02■□□□□ -0
CKS1B-206ENST00000474215 LGR6Q9HBX8 967 aa15.02■□□□□ -0
CKS1B-206ENST00000474215 NUDCQ9Y266 331 aa15.02■□□□□ -0
CKS1B-206ENST00000474215 QSER1Q2KHR3 1735 aa15.01□□□□□ -0.01
CKS1B-206ENST00000474215 C5P01031 1676 aa15.01□□□□□ -0.01
CKS1B-206ENST00000474215 POLD1P28340 1107 aa15.01□□□□□ -0.01
CKS1B-206ENST00000474215 FHDC1Q9C0D6 1143 aaPredicted RBP15.01□□□□□ -0.01
CKS1B-206ENST00000474215 RNMTO43148 476 aaKnown RBP15□□□□□ -0.01
CKS1B-206ENST00000474215 SLC4A9Q96Q91 983 aa15□□□□□ -0.01
CKS1B-206ENST00000474215 SYT17Q9BSW7 474 aa15□□□□□ -0.01
CKS1B-206ENST00000474215 SLC52A2Q9HAB3 445 aa15□□□□□ -0.01
CKS1B-206ENST00000474215 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.99□□□□□ -0.01
CKS1B-206ENST00000474215 DCAF8L1A6NGE4 600 aa14.99□□□□□ -0.01
CKS1B-206ENST00000474215 PTCD1O75127 700 aaKnown RBP14.99□□□□□ -0.01
CKS1B-206ENST00000474215 AMIGO3Q86WK7 504 aa14.99□□□□□ -0.01
CKS1B-206ENST00000474215 PIAS4Q8N2W9 510 aaPredicted RBP14.99□□□□□ -0.01
CKS1B-206ENST00000474215 C4BP0C0L5 1744 aa14.98□□□□□ -0.01
CKS1B-206ENST00000474215 PHF14O94880 888 aa14.98□□□□□ -0.01
CKS1B-206ENST00000474215 U2AF1L5P0DN76 240 aaPredicted RBP14.98□□□□□ -0.01
CKS1B-206ENST00000474215 SSFA2P28290 1259 aa14.98□□□□□ -0.01
CKS1B-206ENST00000474215 U2AF1Q01081 240 aaKnown RBP eCLIP14.98□□□□□ -0.01
CKS1B-206ENST00000474215 TAF1LQ8IZX4 1826 aa14.98□□□□□ -0.01
CKS1B-206ENST00000474215 TUBGCP6Q96RT7 1819 aa14.97□□□□□ -0.01
CKS1B-206ENST00000474215 GNPATO15228 680 aa14.97□□□□□ -0.01
CKS1B-206ENST00000474215 PRKAR2BP31323 418 aa14.97□□□□□ -0.01
CKS1B-206ENST00000474215 DDX10Q13206 875 aaKnown RBP14.97□□□□□ -0.01
CKS1B-206ENST00000474215 RC3H1Q5TC82 1133 aaKnown RBP14.97□□□□□ -0.01
CKS1B-206ENST00000474215 SMIM5Q71RC9 77 aa14.97□□□□□ -0.01
CKS1B-206ENST00000474215 GAS2L2Q8NHY3 880 aa14.97□□□□□ -0.01
CKS1B-206ENST00000474215 PHACTR3Q96KR7 559 aa14.97□□□□□ -0.01
CKS1B-206ENST00000474215 RSPH6AQ9H0K4 717 aa14.97□□□□□ -0.01
CKS1B-206ENST00000474215 GNAT3A8MTJ3 354 aa14.96□□□□□ -0.01
CKS1B-206ENST00000474215 FCHSD2O94868 740 aa14.96□□□□□ -0.01
CKS1B-206ENST00000474215 MSL1Q68DK7 614 aa14.96□□□□□ -0.01
CKS1B-206ENST00000474215 MAP3K5Q99683 1374 aa14.96□□□□□ -0.02
CKS1B-206ENST00000474215 ADRA2BP18089 450 aa14.95□□□□□ -0.02
CKS1B-206ENST00000474215 SCN11AQ9UI33 1791 aa14.94□□□□□ -0.02
CKS1B-206ENST00000474215 TRAPPC3LQ5T215 181 aa14.94□□□□□ -0.02
CKS1B-206ENST00000474215 IL17REQ8NFR9 667 aa14.94□□□□□ -0.02
CKS1B-206ENST00000474215 RTCBQ9Y3I0 505 aaKnown RBP14.94□□□□□ -0.02
CKS1B-206ENST00000474215 COL24A1Q17RW2 1714 aa14.94□□□□□ -0.02
CKS1B-206ENST00000474215 ZNF831Q5JPB2 1677 aa14.93□□□□□ -0.02
CKS1B-206ENST00000474215 CNTNAP4Q9C0A0 1308 aa14.93□□□□□ -0.02
CKS1B-206ENST00000474215 RPS6KA4O75676 772 aa14.93□□□□□ -0.02
CKS1B-206ENST00000474215 SLC39A6Q13433 755 aa14.93□□□□□ -0.02
CKS1B-206ENST00000474215 RALBP1Q15311 655 aa14.93□□□□□ -0.02
CKS1B-206ENST00000474215 KLHL34Q8N239 644 aa14.93□□□□□ -0.02
CKS1B-206ENST00000474215 TEFQ10587 303 aa14.92□□□□□ -0.02
CKS1B-206ENST00000474215 MRC1P22897 1456 aa14.92□□□□□ -0.02
CKS1B-206ENST00000474215 UBR3Q6ZT12 1888 aa14.91□□□□□ -0.02
CKS1B-206ENST00000474215 ZEB1P37275 1124 aaPredicted RBP14.91□□□□□ -0.02
CKS1B-206ENST00000474215 CRKLP46109 303 aaKnown RBP14.91□□□□□ -0.02
CKS1B-206ENST00000474215 ARHGEF1Q92888 912 aaKnown RBP14.91□□□□□ -0.02
CKS1B-206ENST00000474215 ADAMTS7Q9UKP4 1686 aa14.9□□□□□ -0.02
CKS1B-206ENST00000474215 DNAJC10Q8IXB1 793 aa14.9□□□□□ -0.02
CKS1B-206ENST00000474215 RFC4P35249 363 aa14.89□□□□□ -0.03
CKS1B-206ENST00000474215 INTS5Q6P9B9 1019 aaKnown RBP14.89□□□□□ -0.03
CKS1B-206ENST00000474215 TTC5Q8N0Z6 440 aa14.89□□□□□ -0.03
CKS1B-206ENST00000474215 VSIG10Q8N0Z9 540 aa14.89□□□□□ -0.03
CKS1B-206ENST00000474215 NLGN1Q8N2Q7 840 aa14.89□□□□□ -0.03
CKS1B-206ENST00000474215 CD2APQ9Y5K6 639 aa14.89□□□□□ -0.03
CKS1B-206ENST00000474215 CEMIPQ8WUJ3 1361 aa14.88□□□□□ -0.03
CKS1B-206ENST00000474215 CYP19A1P11511 503 aaPredicted RBP14.88□□□□□ -0.03
CKS1B-206ENST00000474215 ZNF790Q6PG37 636 aa14.88□□□□□ -0.03
CKS1B-206ENST00000474215 NLGN2Q8NFZ4 835 aa14.88□□□□□ -0.03
CKS1B-206ENST00000474215 RTF1Q92541 710 aaKnown RBP14.88□□□□□ -0.03
CKS1B-206ENST00000474215 CCDC87Q9NVE4 849 aa14.88□□□□□ -0.03
CKS1B-206ENST00000474215 COL5A3P25940 1745 aaPredicted RBP14.87□□□□□ -0.03
CKS1B-206ENST00000474215 HTATSF1O43719 755 aaKnown RBP14.87□□□□□ -0.03
CKS1B-206ENST00000474215 NEFMP07197 916 aa14.87□□□□□ -0.03
CKS1B-206ENST00000474215 MMP10P09238 476 aa14.86□□□□□ -0.03
CKS1B-206ENST00000474215 GYS1P13807 737 aa14.86□□□□□ -0.03
CKS1B-206ENST00000474215 GPR162Q16538 588 aa14.86□□□□□ -0.03
CKS1B-206ENST00000474215 MCM10Q7L590 875 aa14.86□□□□□ -0.03
CKS1B-206ENST00000474215 ZNF496Q96IT1 587 aaPredicted RBP14.86□□□□□ -0.03
CKS1B-206ENST00000474215 PNNQ9H307 717 aaKnown RBP14.86□□□□□ -0.03
CKS1B-206ENST00000474215 KCPQ6ZWJ8 1503 aa14.86□□□□□ -0.03
CKS1B-206ENST00000474215 BTBD11A6QL63 1104 aa14.85□□□□□ -0.03
CKS1B-206ENST00000474215 STARD3NLO95772 234 aa14.85□□□□□ -0.03
CKS1B-206ENST00000474215 PLEKHF1Q96S99 279 aa14.85□□□□□ -0.03
CKS1B-206ENST00000474215 TEX13AQ9BXU3 409 aaPredicted RBP14.85□□□□□ -0.03
CKS1B-206ENST00000474215 CICQ96RK0 1608 aaPredicted RBP14.84□□□□□ -0.03
CKS1B-206ENST00000474215 TJP1Q07157 1748 aa14.84□□□□□ -0.03
CKS1B-206ENST00000474215 YY1P25490 414 aa14.84□□□□□ -0.03
CKS1B-206ENST00000474215 FMNL2Q96PY5 1086 aa14.84□□□□□ -0.03
CKS1B-206ENST00000474215 MYBBP1AQ9BQG0 1328 aaKnown RBP14.84□□□□□ -0.03
CKS1B-206ENST00000474215 MYH14Q7Z406 1995 aaKnown RBP14.84□□□□□ -0.03
CKS1B-206ENST00000474215 DCTN1Q14203 1278 aa14.83□□□□□ -0.04
CKS1B-206ENST00000474215 PELP1Q8IZL8 1130 aaKnown RBP14.83□□□□□ -0.04
CKS1B-206ENST00000474215 SRP68Q9UHB9 627 aaKnown RBP14.83□□□□□ -0.04
CKS1B-206ENST00000474215 SOS1Q07889 1333 aaPredicted RBP14.83□□□□□ -0.04
CKS1B-206ENST00000474215 USP42Q9H9J4 1324 aaKnown RBP14.83□□□□□ -0.04
CKS1B-206ENST00000474215 HEG1Q9ULI3 1381 aa14.83□□□□□ -0.04
CKS1B-206ENST00000474215 VIRMAQ69YN4 1812 aaKnown RBP14.82□□□□□ -0.04
CKS1B-206ENST00000474215 KCNQ3O43525 872 aa14.82□□□□□ -0.04
CKS1B-206ENST00000474215 ZPR1O75312 459 aa14.82□□□□□ -0.04
CKS1B-206ENST00000474215 ZBTB1Q9Y2K1 713 aa14.82□□□□□ -0.04
CKS1B-206ENST00000474215 CANXP27824 592 aaKnown RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms