RNA–Protein interactions for RNA: ENST00000473969.6

USF1-205, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-205ENST00000473969 NUP188Q5SRE5 1749 aa18.18■□□□□ 0.5
USF1-205ENST00000473969 ITGB4P16144 1822 aa18.17■□□□□ 0.5
USF1-205ENST00000473969 HTATSF1O43719 755 aaKnown RBP18.17■□□□□ 0.5
USF1-205ENST00000473969 ATP6V1AP38606 617 aa18.17■□□□□ 0.5
USF1-205ENST00000473969 PLEKHF1Q96S99 279 aa18.17■□□□□ 0.5
USF1-205ENST00000473969 ANO8Q9HCE9 1232 aaPredicted RBP18.17■□□□□ 0.5
USF1-205ENST00000473969 IL17REQ8NFR9 667 aa18.16■□□□□ 0.5
USF1-205ENST00000473969 NFE2L2Q16236 605 aa18.15■□□□□ 0.5
USF1-205ENST00000473969 TTC5Q8N0Z6 440 aa18.15■□□□□ 0.5
USF1-205ENST00000473969 MRS2Q9HD23 443 aa18.15■□□□□ 0.5
USF1-205ENST00000473969 TFCP2L1Q9NZI6 479 aa18.15■□□□□ 0.5
USF1-205ENST00000473969 ADAMTS8Q9UP79 889 aa18.15■□□□□ 0.5
USF1-205ENST00000473969 PTCD1O75127 700 aaKnown RBP18.14■□□□□ 0.49
USF1-205ENST00000473969 RUNDC1Q96C34 613 aa18.14■□□□□ 0.49
USF1-205ENST00000473969 MCM10Q7L590 875 aa18.13■□□□□ 0.49
USF1-205ENST00000473969 CCDC146Q8IYE0 955 aa18.13■□□□□ 0.49
USF1-205ENST00000473969 AKT1S1Q96B36 256 aa18.13■□□□□ 0.49
USF1-205ENST00000473969 AK7Q96M32 723 aa18.13■□□□□ 0.49
USF1-205ENST00000473969 LMOD3Q0VAK6 560 aa18.12■□□□□ 0.49
USF1-205ENST00000473969 LY75O60449 1722 aa18.12■□□□□ 0.49
USF1-205ENST00000473969 SCN11AQ9UI33 1791 aa18.12■□□□□ 0.49
USF1-205ENST00000473969 BTBD11A6QL63 1104 aa18.11■□□□□ 0.49
USF1-205ENST00000473969 RIPK4P57078 832 aa18.11■□□□□ 0.49
USF1-205ENST00000473969 SLC39A6Q13433 755 aa18.11■□□□□ 0.49
USF1-205ENST00000473969 ZNF827Q17R98 1081 aa18.11■□□□□ 0.49
USF1-205ENST00000473969 MSH5O43196 834 aa18.1■□□□□ 0.49
USF1-205ENST00000473969 DCTN1Q14203 1278 aa18.1■□□□□ 0.49
USF1-205ENST00000473969 NEUROD2Q15784 382 aa18.1■□□□□ 0.49
USF1-205ENST00000473969 MRC1P22897 1456 aa18.09■□□□□ 0.49
USF1-205ENST00000473969 CEMIPQ8WUJ3 1361 aa18.09■□□□□ 0.49
USF1-205ENST00000473969 TMPOP42166 694 aaKnown RBP18.09■□□□□ 0.49
USF1-205ENST00000473969 FLAD1Q8NFF5 587 aa18.09■□□□□ 0.49
USF1-205ENST00000473969 ITPK1Q13572 414 aa18.08■□□□□ 0.48
USF1-205ENST00000473969 TAF7Q15545 349 aaPredicted RBP18.08■□□□□ 0.48
USF1-205ENST00000473969 CCDC184Q52MB2 194 aa18.08■□□□□ 0.48
USF1-205ENST00000473969 ZNF790Q6PG37 636 aa18.08■□□□□ 0.48
USF1-205ENST00000473969 LINC00116Q8NCU8 138 aa18.07■□□□□ 0.48
USF1-205ENST00000473969 PNISRQ8TF01 805 aaKnown RBP18.07■□□□□ 0.48
USF1-205ENST00000473969 SPON1Q9HCB6 807 aa18.07■□□□□ 0.48
USF1-205ENST00000473969 RRP7AQ9Y3A4 280 aaKnown RBP18.07■□□□□ 0.48
USF1-205ENST00000473969 ADAMTS7Q9UKP4 1686 aa18.06■□□□□ 0.48
USF1-205ENST00000473969 FMNL2Q96PY5 1086 aa18.06■□□□□ 0.48
USF1-205ENST00000473969 PAPPAQ13219 1627 aa18.05■□□□□ 0.48
USF1-205ENST00000473969 GNPATO15228 680 aa18.05■□□□□ 0.48
USF1-205ENST00000473969 ZBTB7AO95365 584 aa18.05■□□□□ 0.48
USF1-205ENST00000473969 VSIG10Q8N0Z9 540 aa18.05■□□□□ 0.48
USF1-205ENST00000473969 SLC16A10Q8TF71 515 aa18.05■□□□□ 0.48
USF1-205ENST00000473969 SLC4A9Q96Q91 983 aa18.05■□□□□ 0.48
USF1-205ENST00000473969 PNPLA7Q6ZV29 1317 aa18.04■□□□□ 0.48
USF1-205ENST00000473969 PHF14O94880 888 aa18.04■□□□□ 0.48
USF1-205ENST00000473969 RC3H1Q5TC82 1133 aaKnown RBP18.04■□□□□ 0.48
USF1-205ENST00000473969 TEX13AQ9BXU3 409 aaPredicted RBP18.04■□□□□ 0.48
USF1-205ENST00000473969 RTCBQ9Y3I0 505 aaKnown RBP18.04■□□□□ 0.48
USF1-205ENST00000473969 C5P01031 1676 aa18.03■□□□□ 0.48
USF1-205ENST00000473969 APAF1O14727 1248 aa18.03■□□□□ 0.48
USF1-205ENST00000473969 STARD3NLO95772 234 aa18.03■□□□□ 0.48
USF1-205ENST00000473969 SSFA2P28290 1259 aa18.03■□□□□ 0.48
USF1-205ENST00000473969 THUMPD2Q9BTF0 503 aaKnown RBP18.03■□□□□ 0.48
USF1-205ENST00000473969 PDGFDQ9GZP0 370 aaPredicted RBP18.03■□□□□ 0.48
USF1-205ENST00000473969 MTFR1LQ9H019 292 aa18.03■□□□□ 0.48
USF1-205ENST00000473969 CNTNAP4Q9C0A0 1308 aa18.02■□□□□ 0.48
USF1-205ENST00000473969 DIEXFQ68CQ4 756 aaKnown RBP18.02■□□□□ 0.48
USF1-205ENST00000473969 COL23A1Q86Y22 540 aaPredicted RBP18.02■□□□□ 0.48
USF1-205ENST00000473969 DNAJC10Q8IXB1 793 aa18.02■□□□□ 0.48
USF1-205ENST00000473969 ZNF496Q96IT1 587 aaPredicted RBP18.02■□□□□ 0.48
USF1-205ENST00000473969 PPP1R1BQ9UD71 204 aaPredicted RBP18.02■□□□□ 0.48
USF1-205ENST00000473969 ATF5Q9Y2D1 282 aaPredicted RBP18.02■□□□□ 0.48
USF1-205ENST00000473969 C4BP0C0L5 1744 aa18.01■□□□□ 0.47
USF1-205ENST00000473969 VIRMAQ69YN4 1812 aaKnown RBP18.01■□□□□ 0.47
USF1-205ENST00000473969 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.01■□□□□ 0.47
USF1-205ENST00000473969 CRKLP46109 303 aaKnown RBP18.01■□□□□ 0.47
USF1-205ENST00000473969 TRAPPC3LQ5T215 181 aa18.01■□□□□ 0.47
USF1-205ENST00000473969 FAM9BQ8IZU0 186 aa18.01■□□□□ 0.47
USF1-205ENST00000473969 RPS6KA4O75676 772 aa18■□□□□ 0.47
USF1-205ENST00000473969 MIS18AQ9NYP9 233 aa18■□□□□ 0.47
USF1-205ENST00000473969 TSPYL4Q9UJ04 414 aa18■□□□□ 0.47
USF1-205ENST00000473969 HEG1Q9ULI3 1381 aa18■□□□□ 0.47
USF1-205ENST00000473969 KCNQ3O43525 872 aa17.99■□□□□ 0.47
USF1-205ENST00000473969 CYP19A1P11511 503 aaPredicted RBP17.99■□□□□ 0.47
USF1-205ENST00000473969 ADRA2BP18089 450 aa17.99■□□□□ 0.47
USF1-205ENST00000473969 POLD1P28340 1107 aa17.99■□□□□ 0.47
USF1-205ENST00000473969 CALD1Q05682 793 aaKnown RBP17.99■□□□□ 0.47
USF1-205ENST00000473969 NPM2Q86SE8 214 aaKnown RBP17.99■□□□□ 0.47
USF1-205ENST00000473969 CCDC87Q9NVE4 849 aa17.99■□□□□ 0.47
USF1-205ENST00000473969 LAS1LQ9Y4W2 734 aaKnown RBP17.99■□□□□ 0.47
USF1-205ENST00000473969 ZNF831Q5JPB2 1677 aa17.99■□□□□ 0.47
USF1-205ENST00000473969 TAF1LQ8IZX4 1826 aa17.98■□□□□ 0.47
USF1-205ENST00000473969 SNRPA1P09661 255 aaKnown RBP17.98■□□□□ 0.47
USF1-205ENST00000473969 BABAM1Q9NWV8 329 aa17.98■□□□□ 0.47
USF1-205ENST00000473969 KCPQ6ZWJ8 1503 aa17.98■□□□□ 0.47
USF1-205ENST00000473969 RFC4P35249 363 aa17.97■□□□□ 0.47
USF1-205ENST00000473969 TRIM35Q9UPQ4 493 aa17.97■□□□□ 0.47
USF1-205ENST00000473969 DLG5Q8TDM6 1919 aa17.97■□□□□ 0.47
USF1-205ENST00000473969 SMIM5Q71RC9 77 aa17.96■□□□□ 0.47
USF1-205ENST00000473969 SIPA1L3O60292 1781 aaPredicted RBP17.95■□□□□ 0.46
USF1-205ENST00000473969 CASZ1Q86V15 1759 aa17.95■□□□□ 0.46
USF1-205ENST00000473969 CCER2I3L3R5 266 aa17.95■□□□□ 0.46
USF1-205ENST00000473969 CANXP27824 592 aaKnown RBP17.95■□□□□ 0.46
USF1-205ENST00000473969 INTS5Q6P9B9 1019 aaKnown RBP17.95■□□□□ 0.46
USF1-205ENST00000473969 ARHGEF1Q92888 912 aaKnown RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms