RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 KLRG1Q96E93 195 aa13.09□□□□□ -0.31
VCL-204ENST00000472585 NKX1-1Q15270 411 aaPredicted RBP13.08□□□□□ -0.32
VCL-204ENST00000472585 PCDH11XQ9BZA7 1347 aa13.08□□□□□ -0.32
VCL-204ENST00000472585 PCDH11YQ9BZA8 1340 aa13.08□□□□□ -0.32
VCL-204ENST00000472585 UBR3Q6ZT12 1888 aa13.08□□□□□ -0.32
VCL-204ENST00000472585 CICQ96RK0 1608 aaPredicted RBP13.07□□□□□ -0.32
VCL-204ENST00000472585 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.07□□□□□ -0.32
VCL-204ENST00000472585 PRELPP51888 382 aa13.07□□□□□ -0.32
VCL-204ENST00000472585 ITPK1Q13572 414 aa13.07□□□□□ -0.32
VCL-204ENST00000472585 RBM46Q8TBY0 533 aaKnown RBP13.07□□□□□ -0.32
VCL-204ENST00000472585 SMARCC1Q92922 1105 aaPredicted RBP13.07□□□□□ -0.32
VCL-204ENST00000472585 NMRK2Q9NPI5 230 aa13.07□□□□□ -0.32
VCL-204ENST00000472585 BCS1LQ9Y276 419 aa13.07□□□□□ -0.32
VCL-204ENST00000472585 ARHGAP27Q6ZUM4 889 aa13.06□□□□□ -0.32
VCL-204ENST00000472585 ASAP1Q9ULH1 1129 aa13.06□□□□□ -0.32
VCL-204ENST00000472585 FLT4P35916 1363 aa13.06□□□□□ -0.32
VCL-204ENST00000472585 TOGARAM1Q9Y4F4 1720 aa13.05□□□□□ -0.32
VCL-204ENST00000472585 N4BP2Q86UW6 1770 aaPredicted RBP13.05□□□□□ -0.32
VCL-204ENST00000472585 ITGB4P16144 1822 aa13.05□□□□□ -0.32
VCL-204ENST00000472585 SSFA2P28290 1259 aa13.05□□□□□ -0.32
VCL-204ENST00000472585 HTRA3P83110 453 aa13.05□□□□□ -0.32
VCL-204ENST00000472585 JMYQ8N9B5 988 aa13.05□□□□□ -0.32
VCL-204ENST00000472585 EYA1Q99502 592 aa13.05□□□□□ -0.32
VCL-204ENST00000472585 NCAPD2Q15021 1401 aa13.05□□□□□ -0.32
VCL-204ENST00000472585 SMG6Q86US8 1419 aaKnown RBP13.05□□□□□ -0.32
VCL-204ENST00000472585 LOC102724428A0A0B4J2F2 783 aa13.04□□□□□ -0.32
VCL-204ENST00000472585 SIK1P57059 783 aa13.04□□□□□ -0.32
VCL-204ENST00000472585 TMF1P82094 1093 aa13.04□□□□□ -0.32
VCL-204ENST00000472585 FSTL1Q12841 308 aa13.04□□□□□ -0.32
VCL-204ENST00000472585 SLC4A9Q96Q91 983 aa13.04□□□□□ -0.32
VCL-204ENST00000472585 SLC24A1O60721 1099 aa13.03□□□□□ -0.32
VCL-204ENST00000472585 TGFB2P61812 414 aa13.03□□□□□ -0.32
VCL-204ENST00000472585 KIF13BQ9NQT8 1826 aa13.02□□□□□ -0.32
VCL-204ENST00000472585 PCNTO95613 3336 aa13.02□□□□□ -0.32
VCL-204ENST00000472585 A0A0G2JLW4 131 aa13.02□□□□□ -0.33
VCL-204ENST00000472585 FCHSD2O94868 740 aa13.02□□□□□ -0.33
VCL-204ENST00000472585 MMP10P09238 476 aa13.02□□□□□ -0.33
VCL-204ENST00000472585 ATG3Q9NT62 314 aa13.02□□□□□ -0.33
VCL-204ENST00000472585 POLKQ9UBT6 870 aa13.02□□□□□ -0.33
VCL-204ENST00000472585 WASHC2AQ641Q2 1341 aa13.02□□□□□ -0.33
VCL-204ENST00000472585 KDM2BQ8NHM5 1336 aa13.02□□□□□ -0.33
VCL-204ENST00000472585 KIF24Q5T7B8 1368 aa13.02□□□□□ -0.33
VCL-204ENST00000472585 MAP2P11137 1827 aaKnown RBP13.02□□□□□ -0.33
VCL-204ENST00000472585 GNPATO15228 680 aa13.01□□□□□ -0.33
VCL-204ENST00000472585 PPM1GO15355 546 aaPredicted RBP13.01□□□□□ -0.33
VCL-204ENST00000472585 PHKG2P15735 406 aa13.01□□□□□ -0.33
VCL-204ENST00000472585 PLEKHG2Q9H7P9 1386 aa13.01□□□□□ -0.33
VCL-204ENST00000472585 PXDNLA1KZ92 1463 aa13.01□□□□□ -0.33
VCL-204ENST00000472585 ATP6V1AP38606 617 aa13□□□□□ -0.33
VCL-204ENST00000472585 C9orf131Q5VYM1 1079 aa13□□□□□ -0.33
VCL-204ENST00000472585 CCDC87Q9NVE4 849 aa12.99□□□□□ -0.33
VCL-204ENST00000472585 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.99□□□□□ -0.33
VCL-204ENST00000472585 SPG7Q9UQ90 795 aa12.99□□□□□ -0.33
VCL-204ENST00000472585 KIAA1551Q9HCM1 1747 aa12.99□□□□□ -0.33
VCL-204ENST00000472585 NLGN1Q8N2Q7 840 aa12.98□□□□□ -0.33
VCL-204ENST00000472585 RRAGCQ9HB90 399 aa12.98□□□□□ -0.33
VCL-204ENST00000472585 TMOD3Q9NYL9 352 aa12.98□□□□□ -0.33
VCL-204ENST00000472585 PKD1L3Q7Z443 1732 aa12.98□□□□□ -0.33
VCL-204ENST00000472585 ARFGEF1Q9Y6D6 1849 aa12.97□□□□□ -0.33
VCL-204ENST00000472585 DPEP1P16444 411 aa12.97□□□□□ -0.33
VCL-204ENST00000472585 EIF4A2Q14240 407 aaKnown RBP12.97□□□□□ -0.33
VCL-204ENST00000472585 TRAPPC3LQ5T215 181 aa12.97□□□□□ -0.33
VCL-204ENST00000472585 IFNL2Q8IZJ0 200 aa12.97□□□□□ -0.33
VCL-204ENST00000472585 SMC1BQ8NDV3 1235 aa12.97□□□□□ -0.33
VCL-204ENST00000472585 ARHGEF1Q92888 912 aaKnown RBP12.97□□□□□ -0.33
VCL-204ENST00000472585 BRCA1P38398 1863 aaKnown RBP12.97□□□□□ -0.33
VCL-204ENST00000472585 KDRP35968 1356 aa12.96□□□□□ -0.33
VCL-204ENST00000472585 TNRC6CQ9HCJ0 1690 aaKnown RBP12.96□□□□□ -0.33
VCL-204ENST00000472585 KCNA3P22001 575 aa12.96□□□□□ -0.33
VCL-204ENST00000472585 RNF181Q9P0P0 153 aa12.96□□□□□ -0.33
VCL-204ENST00000472585 RTCBQ9Y3I0 505 aaKnown RBP12.96□□□□□ -0.33
VCL-204ENST00000472585 PARP3Q9Y6F1 533 aa12.96□□□□□ -0.33
VCL-204ENST00000472585 KCPQ6ZWJ8 1503 aa12.96□□□□□ -0.33
VCL-204ENST00000472585 C10orf71Q711Q0 1435 aa12.96□□□□□ -0.34
VCL-204ENST00000472585 HSPA1AP0DMV8 641 aaKnown RBP12.95□□□□□ -0.34
VCL-204ENST00000472585 HSPA1BP0DMV9 641 aaKnown RBP12.95□□□□□ -0.34
VCL-204ENST00000472585 GYS1P13807 737 aa12.95□□□□□ -0.34
VCL-204ENST00000472585 PIM2Q9P1W9 311 aa12.95□□□□□ -0.34
VCL-204ENST00000472585 TNNT2P45379 298 aaPredicted RBP12.94□□□□□ -0.34
VCL-204ENST00000472585 CDCA8Q53HL2 280 aa12.94□□□□□ -0.34
VCL-204ENST00000472585 KIF20BQ96Q89 1820 aa12.94□□□□□ -0.34
VCL-204ENST00000472585 C4AP0C0L4 1744 aa12.93□□□□□ -0.34
VCL-204ENST00000472585 RFC4P35249 363 aa12.93□□□□□ -0.34
VCL-204ENST00000472585 DALRD3Q5D0E6 543 aaKnown RBP12.93□□□□□ -0.34
VCL-204ENST00000472585 RC3H1Q5TC82 1133 aaKnown RBP12.93□□□□□ -0.34
VCL-204ENST00000472585 RBM42Q9BTD8 480 aaKnown RBP12.93□□□□□ -0.34
VCL-204ENST00000472585 SBF1O95248 1867 aa12.93□□□□□ -0.34
VCL-204ENST00000472585 ERVV-2B6SEH9 535 aa12.92□□□□□ -0.34
VCL-204ENST00000472585 RPS6KA4O75676 772 aa12.92□□□□□ -0.34
VCL-204ENST00000472585 KDM6AO15550 1401 aaPredicted RBP12.91□□□□□ -0.34
VCL-204ENST00000472585 AEBP1Q8IUX7 1158 aa12.91□□□□□ -0.34
VCL-204ENST00000472585 DCAF5Q96JK2 942 aa12.91□□□□□ -0.34
VCL-204ENST00000472585 SRP68Q9UHB9 627 aaKnown RBP12.91□□□□□ -0.34
VCL-204ENST00000472585 ANKRD26Q9UPS8 1709 aa12.91□□□□□ -0.34
VCL-204ENST00000472585 CNTNAP4Q9C0A0 1308 aa12.89□□□□□ -0.35
VCL-204ENST00000472585 PTCD1O75127 700 aaKnown RBP12.89□□□□□ -0.35
VCL-204ENST00000472585 VEGFAP15692 232 aaPredicted RBP12.89□□□□□ -0.35
VCL-204ENST00000472585 DDR1Q08345 913 aa12.89□□□□□ -0.35
VCL-204ENST00000472585 FKBP8Q14318 412 aa12.89□□□□□ -0.35
VCL-204ENST00000472585 CABP4P57796 275 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms